Wall clock time and date at job start Tue Mar 31 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46874 * 2 1 4 4 C 1.50698 * 109.46867 * 119.99450 * 2 1 3 5 5 O 1.21279 * 119.99962 * 95.32264 * 4 2 1 6 6 N 1.34779 * 120.00255 * 275.31980 * 4 2 1 7 7 C 1.46502 * 120.00091 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47300 * 179.97438 * 7 6 4 9 9 C 1.50693 * 109.47143 * 179.97438 * 8 7 6 10 10 H 1.08007 * 120.00230 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00008 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00036 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46853 * 60.00179 * 13 11 9 15 15 H 1.48498 * 109.46775 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47156 * 300.00179 * 13 11 9 17 17 C 1.50693 * 109.47385 * 239.99945 * 2 1 3 18 18 C 1.38251 * 119.97135 * 307.39792 * 17 2 1 19 19 C 1.38201 * 120.02333 * 179.72840 * 18 17 2 20 20 C 1.38461 * 119.97168 * 0.56380 * 19 18 17 21 21 F 1.35102 * 120.02357 * 179.68640 * 20 19 18 22 22 C 1.38460 * 119.94998 * 359.71097 * 20 19 18 23 23 C 1.38200 * 119.97514 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47370 * 300.00038 * 1 2 3 25 25 H 1.08996 * 109.47174 * 60.00343 * 1 2 3 26 26 H 1.09004 * 109.46977 * 180.02562 * 1 2 3 27 27 H 0.96696 * 114.00021 * 180.02562 * 3 2 1 28 28 H 0.96998 * 120.00195 * 359.72444 * 6 4 2 29 29 H 1.08999 * 109.46836 * 300.00549 * 7 6 4 30 30 H 1.09005 * 109.46777 * 60.00353 * 7 6 4 31 31 H 1.08996 * 109.47258 * 300.00269 * 8 7 6 32 32 H 1.09005 * 109.46795 * 60.00514 * 8 7 6 33 33 H 0.96999 * 120.00149 * 180.02562 * 12 11 9 34 34 H 1.08000 * 119.98728 * 359.97438 * 18 17 2 35 35 H 1.07998 * 120.01220 * 180.25270 * 19 18 17 36 36 H 1.08001 * 120.01178 * 179.97438 * 22 20 19 37 37 H 1.07996 * 119.98523 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3263 -1.8856 1.1748 6 7 2.1549 -0.0395 2.3931 7 6 2.6437 -0.7299 3.5892 8 6 2.6881 0.2514 4.7622 9 6 3.1903 -0.4589 5.9926 10 1 3.4521 -1.5056 5.9429 11 6 3.3156 0.2273 7.1819 12 7 2.9964 1.5016 7.2426 13 14 3.9388 -0.6531 8.7071 14 1 5.3035 -1.1801 8.4514 15 1 3.9806 0.2991 9.8458 16 1 3.0273 -1.7782 9.0364 17 6 2.0324 -0.7104 -1.2304 18 6 1.5769 -1.9812 -1.5286 19 6 2.0326 -2.6314 -2.6597 20 6 2.9546 -2.0143 -3.4881 21 9 3.4056 -2.6516 -4.5907 22 6 3.4144 -0.7438 -3.1853 23 6 2.9523 -0.0929 -2.0572 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9702 1.4237 -0.0004 28 1 1.9236 0.9015 2.4368 29 1 1.9746 -1.5557 3.8309 30 1 3.6454 -1.1167 3.4015 31 1 3.3574 1.0770 4.5201 32 1 1.6866 0.6387 4.9500 33 1 3.0849 1.9845 8.0792 34 1 0.8616 -2.4643 -0.8794 35 1 1.6736 -3.6225 -2.8946 36 1 4.1339 -0.2617 -3.8306 37 1 3.3111 0.8978 -1.8207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:47 Heat of formation + Delta-G solvation = -139.010601 kcal Electronic energy + Delta-G solvation = -21413.567422 eV Core-core repulsion = 17876.004772 eV Total energy + Delta-G solvation = -3537.562650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.93490 -41.72594 -39.69504 -37.76999 -36.63602 -34.79423 -33.30614 -32.00387 -31.59802 -30.02095 -27.06451 -25.33993 -23.98426 -23.41643 -22.52621 -21.14587 -19.53632 -18.75513 -18.45655 -17.85374 -17.33062 -16.74219 -16.62812 -16.53054 -16.46810 -15.66514 -15.32683 -15.16576 -14.66609 -14.46718 -14.29901 -14.13753 -13.89066 -13.41257 -13.33538 -13.26314 -13.14636 -12.92459 -12.81508 -12.54926 -12.24304 -12.01002 -11.85971 -11.66751 -11.45635 -10.60379 -10.59878 -10.07233 -10.05201 -9.63687 -8.24095 -6.34880 0.02906 0.25947 1.42048 1.43899 1.47102 1.51987 2.08822 2.41637 2.63381 3.01612 3.10651 3.23083 3.43015 3.66164 3.74409 3.92629 4.03878 4.29648 4.43383 4.46700 4.48175 4.67488 4.75792 4.84360 4.90855 4.93999 5.08805 5.12008 5.21809 5.26652 5.43620 5.47214 5.57653 5.77983 5.85523 6.15475 6.34261 6.64007 6.78437 7.17516 7.34603 8.87392 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032079 B = 0.003183 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.622888 B = 8795.997053 C = 9111.247172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.177 3.823 3 O -0.540 6.540 4 C 0.483 3.517 5 O -0.570 6.570 6 N -0.706 5.706 7 C 0.140 3.860 8 C 0.024 3.976 9 C -0.549 4.549 10 H 0.059 0.941 11 C 0.008 3.992 12 N -0.926 5.926 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.126 4.126 18 C -0.061 4.061 19 C -0.162 4.162 20 C 0.084 3.916 21 F -0.146 7.146 22 C -0.155 4.155 23 C -0.079 4.079 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.394 0.606 28 H 0.413 0.587 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -1.355 -20.814 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.132 3.868 3 O -0.348 6.348 4 C 0.268 3.732 5 O -0.449 6.449 6 N -0.357 5.357 7 C 0.016 3.984 8 C -0.014 4.014 9 C -0.587 4.587 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.127 4.127 18 C -0.079 4.079 19 C -0.180 4.180 20 C 0.065 3.935 21 F -0.125 7.125 22 C -0.174 4.174 23 C -0.097 4.097 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.245 0.755 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.592 -1.923 -20.755 21.151 hybrid contribution 0.933 -0.261 0.908 1.328 sum -2.659 -2.184 -19.846 20.142 Atomic orbital electron populations 1.21847 0.88438 1.04062 1.05031 1.19998 0.97407 0.81733 0.87629 1.86598 1.28785 1.22970 1.96455 1.21780 0.77939 0.87602 0.85884 1.90686 1.50939 1.17542 1.85765 1.46145 1.65281 1.15044 1.09218 1.21258 0.97564 0.95573 0.83976 1.19117 0.96357 0.94238 0.91680 1.21446 1.44770 0.97096 0.95422 0.92307 1.25857 0.95338 0.95607 1.02269 1.70045 1.48947 1.09667 1.27854 0.85523 0.79170 0.78342 0.78172 1.19337 1.20623 1.19357 1.20182 0.99698 0.95944 0.96880 1.20918 0.98655 0.93413 0.94926 1.21302 0.99053 1.02091 0.95576 1.17993 0.97591 0.92709 0.85179 1.91480 1.87956 1.81911 1.51173 1.21336 1.02720 0.93652 0.99666 1.21069 0.94701 1.00930 0.93012 0.90686 0.88736 0.89930 0.75466 0.75098 0.93393 0.93437 0.97262 0.97410 0.92514 0.84784 0.83313 0.82408 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.55 71.98 0.62 -2.01 16 2 C 0.18 3.96 1.15 -12.29 -0.01 3.94 16 3 O -0.54 -10.23 11.52 -148.98 -1.72 -11.95 16 4 C 0.48 14.89 6.68 87.66 0.59 15.47 16 5 O -0.57 -21.54 15.19 -3.03 -0.05 -21.58 16 6 N -0.71 -23.27 5.47 -463.06 -2.53 -25.80 16 7 C 0.14 5.81 5.61 86.38 0.48 6.30 16 8 C 0.02 1.16 5.09 29.85 0.15 1.31 16 9 C -0.55 -30.25 9.11 25.60 0.23 -30.02 16 10 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -53.76 13.29 21.45 0.28 -53.48 16 13 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 C -0.13 -2.75 4.56 -19.86 -0.09 -2.84 16 18 C -0.06 -1.38 8.00 22.26 0.18 -1.20 16 19 C -0.16 -3.40 10.03 22.31 0.22 -3.18 16 20 C 0.08 1.79 7.30 22.38 0.16 1.95 16 21 F -0.15 -3.24 17.27 44.97 0.78 -2.46 16 22 C -0.16 -2.81 10.03 22.31 0.22 -2.59 16 23 C -0.08 -1.44 9.24 22.26 0.21 -1.23 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.52 7.01 -2.39 -0.02 1.50 16 27 H 0.39 5.45 7.74 -74.06 -0.57 4.87 16 28 H 0.41 12.18 7.91 -92.71 -0.73 11.45 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.13 2.98 6.97 -2.91 -0.02 2.96 16 35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.16 2.00 6.43 -2.91 -0.02 1.98 16 Total: -1.00 -66.57 321.47 2.02 -64.55 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.20 Total: 18.76 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.42 Total: -13.16 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.25 Total: -79.28 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.76 Total: -33.53 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.57 2.02 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.456 kcal (2) G-P(sol) polarization free energy of solvation -66.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds