Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.69216 * 2 1 4 4 C 1.42049 * 103.95698 * 179.97438 * 3 2 1 5 5 N 1.39358 * 126.89986 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99893 * 0.02562 * 5 4 3 7 7 O 1.21361 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.49379 * 119.99691 * 180.02562 * 6 5 4 9 9 O 1.21352 * 120.00359 * 5.91780 * 8 6 5 10 10 N 1.34780 * 119.99536 * 185.92085 * 8 6 5 11 11 C 1.46500 * 120.00011 * 356.41275 * 10 8 6 12 12 C 1.46500 * 119.99948 * 176.42280 * 10 8 6 13 13 H 1.09006 * 109.47042 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.46770 * 239.99829 * 12 10 8 15 15 C 1.50694 * 109.47382 * 119.99673 * 12 10 8 16 16 H 1.08001 * 120.00179 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00033 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00162 * 179.71967 * 17 15 12 19 19 Si 1.86806 * 119.99672 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.46729 * 269.72250 * 19 17 15 21 21 H 1.48493 * 109.47257 * 29.72334 * 19 17 15 22 22 H 1.48498 * 109.46905 * 149.72671 * 19 17 15 23 23 N 1.30754 * 106.20313 * 0.26986 * 4 3 2 24 24 O 1.20920 * 111.46816 * 359.52680 * 23 4 3 25 25 H 1.08995 * 109.46681 * 90.00022 * 1 2 3 26 26 H 1.09007 * 109.46846 * 210.00076 * 1 2 3 27 27 H 1.08997 * 109.46901 * 329.99699 * 1 2 3 28 28 H 1.07996 * 128.01953 * 359.93324 * 3 2 1 29 29 H 0.97004 * 119.99807 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47682 * 275.98751 * 11 10 8 31 31 H 1.09000 * 109.46946 * 35.99044 * 11 10 8 32 32 H 1.09002 * 109.47045 * 155.98507 * 11 10 8 33 33 H 1.08997 * 109.47310 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47327 * 299.99493 * 14 12 10 35 35 H 1.08999 * 109.47517 * 59.99278 * 14 12 10 36 36 H 0.97000 * 119.99809 * 180.27528 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0006 5 7 4.8276 1.2399 0.0004 6 6 4.8190 2.5877 0.0000 7 8 3.7642 3.1877 -0.0006 8 6 6.1079 3.3427 -0.0009 9 8 7.1599 2.7475 -0.1096 10 7 6.1025 4.6852 0.1191 11 6 4.8309 5.4108 0.1713 12 6 7.3682 5.4187 0.1972 13 1 8.1995 4.7157 0.1429 14 6 7.4334 6.1838 1.5205 15 6 7.4567 6.3915 -0.9504 16 1 6.6509 6.4565 -1.6665 17 6 8.5664 7.1985 -1.0861 18 7 8.6461 8.0435 -2.0906 19 14 9.9604 7.0855 0.1523 20 1 9.7155 8.0416 1.2618 21 1 10.0300 5.7049 0.6947 22 1 11.2439 7.4203 -0.5154 23 7 3.4765 -0.7636 -0.0050 24 8 2.3082 -1.0753 0.0005 25 1 -0.3632 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 2.0304 2.1262 -0.0010 29 1 5.6708 0.7602 0.0005 30 1 4.4724 5.5892 -0.8425 31 1 4.0967 4.8184 0.7173 32 1 4.9774 6.3647 0.6780 33 1 8.3752 6.7293 1.5789 34 1 6.6021 6.8868 1.5752 35 1 7.3693 5.4803 2.3506 36 1 9.4285 8.6084 -2.1882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115984416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = 23.712163 kcal Electronic energy + Delta-G solvation = -21962.692092 eV Core-core repulsion = 18452.105592 eV Total energy + Delta-G solvation = -3510.586500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.02784 -40.78966 -38.53716 -36.38117 -35.42142 -33.80646 -32.79778 -32.08044 -30.54513 -28.03657 -26.59560 -25.63729 -25.07773 -23.53073 -21.62199 -20.86648 -19.26872 -17.85274 -17.59991 -17.47379 -16.89252 -16.73220 -15.98912 -15.83639 -15.32892 -14.68627 -14.00521 -13.84943 -13.76185 -13.53900 -13.39294 -13.06652 -12.75396 -12.49035 -12.33489 -12.11872 -11.89474 -11.83881 -11.40091 -11.29705 -10.85638 -10.79883 -10.24368 -9.72638 -9.59312 -9.47625 -9.11924 -9.00383 -8.72926 -8.00307 -6.22933 -4.25473 1.08913 1.49497 2.11178 2.32463 2.95083 3.16926 3.30859 3.31525 3.42748 3.61545 4.14679 4.26562 4.47929 4.70139 4.87009 5.01724 5.09072 5.10286 5.30311 5.53850 5.69276 5.81771 6.05842 6.08304 6.18573 6.18984 6.30934 6.45633 6.69338 6.69924 6.90683 7.03529 7.45622 7.56342 7.87724 8.14149 8.23254 8.41868 8.78341 9.35635 10.89489 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.003748 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.316745 B = 7468.698671 C = 7737.962392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.226 4.226 4 C 0.250 3.750 5 N -0.611 5.611 6 C 0.521 3.479 7 O -0.490 6.490 8 C 0.501 3.499 9 O -0.530 6.530 10 N -0.543 5.543 11 C 0.070 3.930 12 C 0.227 3.773 13 H 0.067 0.933 14 C -0.163 4.163 15 C -0.532 4.532 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.883 3.117 20 H -0.275 1.275 21 H -0.263 1.263 22 H -0.292 1.292 23 N -0.388 5.388 24 O 0.098 5.902 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.192 0.808 29 H 0.430 0.570 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.923 -12.470 6.606 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.248 4.248 4 C 0.001 3.999 5 N -0.264 5.264 6 C 0.304 3.696 7 O -0.362 6.362 8 C 0.281 3.719 9 O -0.408 6.408 10 N -0.273 5.273 11 C -0.072 4.072 12 C 0.126 3.874 13 H 0.084 0.916 14 C -0.221 4.221 15 C -0.570 4.570 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.712 3.288 20 H -0.202 1.202 21 H -0.188 1.188 22 H -0.219 1.219 23 N -0.104 5.104 24 O 0.036 5.964 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.209 0.791 29 H 0.269 0.731 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.156 -13.126 6.445 20.353 hybrid contribution 0.970 0.726 0.471 1.300 sum -13.186 -12.400 6.916 19.377 Atomic orbital electron populations 1.20340 0.83691 1.04693 1.04230 1.24445 0.96501 0.85826 1.02276 1.22756 0.89138 1.02268 1.10674 1.20510 0.88334 0.88900 1.02200 1.42259 1.06940 1.06172 1.71060 1.20877 0.91360 0.81334 0.76040 1.90601 1.33054 1.67053 1.45471 1.19318 0.87598 0.83958 0.80997 1.90749 1.31684 1.68120 1.50290 1.47875 1.10065 1.03909 1.65411 1.22229 0.84387 0.97743 1.02853 1.19540 0.81406 0.92104 0.94370 0.91559 1.22484 1.01747 1.00180 0.97670 1.21081 1.06407 1.19649 1.09909 0.90063 1.24852 0.97714 0.94523 0.95456 1.69861 1.29733 1.23263 1.29858 0.86925 0.81649 0.79247 0.80963 1.20228 1.18761 1.21940 1.74078 0.97509 1.13082 1.25692 1.84799 1.10410 1.32371 1.68784 0.89280 0.89807 0.88844 0.79075 0.73062 0.92250 0.89267 0.90781 0.92693 0.92085 0.94553 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.45 36.01 0.38 0.01 16 2 C -0.03 -0.26 7.48 -35.37 -0.26 -0.53 16 3 C -0.23 -2.77 9.79 -39.19 -0.38 -3.15 16 4 C 0.25 3.54 8.17 -154.93 -1.27 2.28 16 5 N -0.61 -8.94 5.41 -11.85 -0.06 -9.01 16 6 C 0.52 8.48 7.74 -11.62 -0.09 8.39 16 7 O -0.49 -7.84 10.42 5.49 0.06 -7.78 16 8 C 0.50 9.73 7.73 -11.62 -0.09 9.64 16 9 O -0.53 -11.42 15.82 5.49 0.09 -11.33 16 10 N -0.54 -11.03 2.75 -175.80 -0.48 -11.52 16 11 C 0.07 1.22 8.75 59.85 0.52 1.74 16 12 C 0.23 5.28 2.21 -69.09 -0.15 5.13 16 13 H 0.07 1.68 5.96 -51.93 -0.31 1.37 16 14 C -0.16 -3.35 8.66 37.16 0.32 -3.03 16 15 C -0.53 -14.39 8.95 -34.44 -0.31 -14.70 16 16 H 0.08 2.38 7.89 -52.49 -0.41 1.97 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 18 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 19 Si 0.88 21.08 24.37 -169.99 -4.14 16.94 16 20 H -0.28 -6.28 6.88 56.52 0.39 -5.89 16 21 H -0.26 -6.13 6.52 56.52 0.37 -5.76 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 N -0.39 -5.44 12.10 31.18 0.38 -5.06 16 24 O 0.10 1.17 11.19 17.04 0.19 1.36 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.19 2.32 6.22 -52.49 -0.33 2.00 16 29 H 0.43 5.88 8.31 -40.82 -0.34 5.54 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.38 5.36 -51.93 -0.28 1.10 16 32 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 33 H 0.05 1.18 3.28 -51.93 -0.17 1.01 16 34 H 0.06 1.17 6.67 -51.93 -0.35 0.82 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -31.49 301.04 -3.91 -35.41 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.81 Total: 4.13 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.43 Total: 7.85 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.60 Total: -51.10 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.33 Total: -17.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.49 -3.91 -35.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115984416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.118 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds