Wall clock time and date at job start Tue Mar 31 2020 05:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35240 * 126.69216 * 2 1 4 4 C 1.42049 * 103.95698 * 179.97438 * 3 2 1 5 5 N 1.39358 * 126.89986 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99893 * 0.02562 * 5 4 3 7 7 O 1.21361 * 120.00070 * 359.97438 * 6 5 4 8 8 C 1.49379 * 119.99691 * 180.02562 * 6 5 4 9 9 O 1.21352 * 120.00359 * 5.91780 * 8 6 5 10 10 N 1.34780 * 119.99536 * 185.92085 * 8 6 5 11 11 C 1.46500 * 120.00011 * 356.41275 * 10 8 6 12 12 C 1.46500 * 119.99948 * 176.42280 * 10 8 6 13 13 H 1.09006 * 109.47042 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.46770 * 239.99829 * 12 10 8 15 15 C 1.50694 * 109.47382 * 119.99673 * 12 10 8 16 16 H 1.08001 * 120.00179 * 359.97438 * 15 12 10 17 17 C 1.37884 * 120.00033 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00162 * 179.71967 * 17 15 12 19 19 Si 1.86806 * 119.99672 * 0.02562 * 17 15 12 20 20 H 1.48498 * 109.46729 * 269.72250 * 19 17 15 21 21 H 1.48493 * 109.47257 * 29.72334 * 19 17 15 22 22 H 1.48498 * 109.46905 * 149.72671 * 19 17 15 23 23 N 1.30754 * 106.20313 * 0.26986 * 4 3 2 24 24 O 1.20920 * 111.46816 * 359.52680 * 23 4 3 25 25 H 1.08995 * 109.46681 * 90.00022 * 1 2 3 26 26 H 1.09007 * 109.46846 * 210.00076 * 1 2 3 27 27 H 1.08997 * 109.46901 * 329.99699 * 1 2 3 28 28 H 1.07996 * 128.01953 * 359.93324 * 3 2 1 29 29 H 0.97004 * 119.99807 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47682 * 275.98751 * 11 10 8 31 31 H 1.09000 * 109.46946 * 35.99044 * 11 10 8 32 32 H 1.09002 * 109.47045 * 155.98507 * 11 10 8 33 33 H 1.08997 * 109.47310 * 179.97438 * 14 12 10 34 34 H 1.09001 * 109.47327 * 299.99493 * 14 12 10 35 35 H 1.08999 * 109.47517 * 59.99278 * 14 12 10 36 36 H 0.97000 * 119.99809 * 180.27528 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0844 0.0000 4 6 3.6252 0.5354 0.0006 5 7 4.8276 1.2399 0.0004 6 6 4.8190 2.5877 0.0000 7 8 3.7642 3.1877 -0.0006 8 6 6.1079 3.3427 -0.0009 9 8 7.1599 2.7475 -0.1096 10 7 6.1025 4.6852 0.1191 11 6 4.8309 5.4108 0.1713 12 6 7.3682 5.4187 0.1972 13 1 8.1995 4.7157 0.1429 14 6 7.4334 6.1838 1.5205 15 6 7.4567 6.3915 -0.9504 16 1 6.6509 6.4565 -1.6665 17 6 8.5664 7.1985 -1.0861 18 7 8.6461 8.0435 -2.0906 19 14 9.9604 7.0855 0.1523 20 1 9.7155 8.0416 1.2618 21 1 10.0300 5.7049 0.6947 22 1 11.2439 7.4203 -0.5154 23 7 3.4765 -0.7636 -0.0050 24 8 2.3082 -1.0753 0.0005 25 1 -0.3632 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 2.0304 2.1262 -0.0010 29 1 5.6708 0.7602 0.0005 30 1 4.4724 5.5892 -0.8425 31 1 4.0967 4.8184 0.7173 32 1 4.9774 6.3647 0.6780 33 1 8.3752 6.7293 1.5789 34 1 6.6021 6.8868 1.5752 35 1 7.3693 5.4803 2.3506 36 1 9.4285 8.6084 -2.1882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115984416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:24 Heat of formation + Delta-G solvation = 1.255835 kcal Electronic energy + Delta-G solvation = -21963.665872 eV Core-core repulsion = 18452.105592 eV Total energy + Delta-G solvation = -3511.560280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.01099 -42.17921 -40.02228 -37.87206 -36.80233 -34.75772 -34.58699 -33.14577 -32.36603 -28.68786 -28.05920 -27.29079 -26.78965 -24.67354 -22.99169 -22.03433 -20.82357 -19.09613 -18.83859 -18.69614 -18.52707 -18.03770 -17.48380 -17.30770 -16.83874 -16.25264 -15.46252 -15.17873 -14.87613 -14.75556 -14.39316 -14.15074 -14.04779 -13.95111 -13.71082 -13.59395 -13.23007 -13.14631 -12.95713 -12.65962 -12.35905 -12.26707 -12.07766 -11.55634 -11.42174 -10.82890 -10.58389 -10.45259 -10.09414 -9.65754 -8.36989 -6.44098 -0.13639 0.52029 0.81684 1.20051 1.28129 1.37376 1.45525 2.00240 2.10252 2.26632 2.29492 2.96130 3.01504 3.28952 3.73523 4.01052 4.28368 4.33998 4.39341 4.48458 4.54900 4.62996 4.78192 4.79063 4.86341 4.94664 5.02259 5.12492 5.20033 5.29004 5.35332 5.50281 5.61325 6.03856 6.29995 6.40867 6.59253 6.76874 7.19932 7.21689 8.78983 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040260 B = 0.003748 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.316745 B = 7468.698671 C = 7737.962392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.001 4.001 3 C -0.248 4.248 4 C 0.227 3.773 5 N -0.604 5.604 6 C 0.533 3.467 7 O -0.487 6.487 8 C 0.498 3.502 9 O -0.556 6.556 10 N -0.552 5.552 11 C 0.074 3.926 12 C 0.229 3.771 13 H 0.046 0.954 14 C -0.157 4.157 15 C -0.534 4.534 16 H 0.043 0.957 17 C 0.025 3.975 18 N -0.937 5.937 19 Si 0.942 3.058 20 H -0.252 1.252 21 H -0.254 1.254 22 H -0.296 1.296 23 N -0.406 5.406 24 O 0.100 5.900 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.193 0.807 29 H 0.433 0.567 30 H 0.048 0.952 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.523 -13.476 8.417 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.271 4.271 4 C -0.021 4.021 5 N -0.256 5.256 6 C 0.315 3.685 7 O -0.359 6.359 8 C 0.280 3.720 9 O -0.436 6.436 10 N -0.282 5.282 11 C -0.067 4.067 12 C 0.126 3.874 13 H 0.064 0.936 14 C -0.215 4.215 15 C -0.572 4.572 16 H 0.061 0.939 17 C -0.175 4.175 18 N -0.576 5.576 19 Si 0.769 3.231 20 H -0.177 1.177 21 H -0.179 1.179 22 H -0.224 1.224 23 N -0.121 5.121 24 O 0.038 5.962 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.210 0.790 29 H 0.272 0.728 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.793 -14.156 8.272 22.765 hybrid contribution 1.305 0.931 -0.187 1.614 sum -14.487 -13.225 8.085 21.217 Atomic orbital electron populations 1.20652 0.79939 1.06497 1.05860 1.25217 0.98138 0.84265 0.98898 1.22842 0.88690 1.03015 1.12543 1.20734 0.88512 0.89354 1.03451 1.42026 1.07634 1.05520 1.70438 1.20039 0.89924 0.81796 0.76780 1.90593 1.32337 1.67191 1.45792 1.19784 0.88556 0.83768 0.79919 1.90727 1.33073 1.68636 1.51140 1.47888 1.10052 1.04493 1.65762 1.22337 0.83513 0.98235 1.02648 1.19270 0.82429 0.91141 0.94530 0.93604 1.22357 1.01942 1.00592 0.96575 1.21273 1.05258 1.20207 1.10455 0.93852 1.25674 1.00357 0.94118 0.97310 1.69999 1.30845 1.24693 1.32101 0.85959 0.77933 0.80120 0.79131 1.17673 1.17865 1.22366 1.74080 0.98682 1.13062 1.26287 1.84773 1.10083 1.33039 1.68306 0.87490 0.87797 0.87212 0.79038 0.72786 0.93332 0.86974 0.90200 0.93285 0.90831 0.91821 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.45 71.24 0.74 0.28 16 2 C 0.00 -0.02 7.48 25.00 0.19 0.16 16 3 C -0.25 -5.66 9.79 22.52 0.22 -5.44 16 4 C 0.23 6.24 8.17 134.15 1.10 7.34 16 5 N -0.60 -17.39 5.41 -310.79 -1.68 -19.07 16 6 C 0.53 17.01 7.74 87.25 0.67 17.68 16 7 O -0.49 -15.00 10.42 -3.28 -0.03 -15.04 16 8 C 0.50 19.26 7.73 87.25 0.67 19.94 16 9 O -0.56 -24.12 15.82 -3.25 -0.05 -24.17 16 10 N -0.55 -22.28 2.75 -828.46 -2.28 -24.56 16 11 C 0.07 2.51 8.75 127.77 1.12 3.62 16 12 C 0.23 10.56 2.21 44.24 0.10 10.66 16 13 H 0.05 2.32 5.96 -2.38 -0.01 2.30 16 14 C -0.16 -6.10 8.66 71.98 0.62 -5.48 16 15 C -0.53 -29.44 8.95 25.60 0.23 -29.21 16 16 H 0.04 2.65 7.89 -2.91 -0.02 2.63 16 17 C 0.02 1.39 5.45 84.66 0.46 1.85 16 18 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 19 Si 0.94 43.18 24.37 68.60 1.67 44.85 16 20 H -0.25 -10.51 6.88 99.48 0.68 -9.83 16 21 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 23 N -0.41 -10.96 12.10 -56.33 -0.68 -11.64 16 24 O 0.10 2.19 11.19 71.14 0.80 2.99 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.19 4.33 6.22 -2.91 -0.02 4.31 16 29 H 0.43 11.83 8.31 -92.71 -0.77 11.06 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 3.27 5.36 -2.47 -0.01 3.26 16 32 H 0.08 2.58 6.44 -2.39 -0.02 2.57 16 33 H 0.05 1.96 3.28 -2.39 -0.01 1.96 16 34 H 0.07 2.65 6.67 -2.39 -0.02 2.63 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -69.34 301.04 4.46 -64.88 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.29 Total: 16.78 kcal Atomic # 6 Polarization: 15.28 SS G_CDS: 6.13 Total: 21.40 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.34 Total: -111.70 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: 0.71 Total: -36.22 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.67 Total: 44.85 kcal Total: -69.34 4.46 -64.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115984416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.141 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds