Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35241 * 128.02466 * 2 1 4 4 O 1.34088 * 106.61919 * 180.25521 * 3 2 1 5 5 N 1.20912 * 111.75331 * 359.72930 * 4 3 2 6 6 C 1.30748 * 111.47025 * 359.97438 * 5 4 3 7 7 N 1.39366 * 126.89855 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99774 * 0.02968 * 7 6 5 9 9 O 1.21357 * 120.00581 * 359.97438 * 8 7 6 10 10 C 1.49385 * 119.99366 * 180.27457 * 8 7 6 11 11 O 1.21356 * 120.00219 * 353.88826 * 10 8 7 12 12 N 1.34777 * 119.99724 * 173.89096 * 10 8 7 13 13 C 1.46500 * 119.99884 * 3.63254 * 12 10 8 14 14 C 1.46494 * 120.00041 * 183.64001 * 12 10 8 15 15 H 1.08995 * 109.47426 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47585 * 120.00165 * 14 12 10 17 17 C 1.50703 * 109.47051 * 239.99914 * 14 12 10 18 18 H 1.08005 * 119.99832 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00241 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00129 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46971 * 60.00182 * 21 19 17 23 23 H 1.48498 * 109.46872 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47337 * 300.00006 * 21 19 17 25 25 H 1.08994 * 109.47272 * 270.17852 * 1 2 3 26 26 H 1.09002 * 109.46927 * 30.18067 * 1 2 3 27 27 H 1.09002 * 109.47236 * 150.17968 * 1 2 3 28 28 H 1.08004 * 126.69202 * 359.97438 * 3 2 1 29 29 H 0.96997 * 119.99494 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.46937 * 83.99925 * 13 12 10 31 31 H 1.09004 * 109.47407 * 203.98922 * 13 12 10 32 32 H 1.08994 * 109.47483 * 323.99463 * 13 12 10 33 33 H 1.08996 * 109.47118 * 180.02562 * 16 14 12 34 34 H 1.09003 * 109.47002 * 299.99589 * 16 14 12 35 35 H 1.08997 * 109.47671 * 59.99618 * 16 14 12 36 36 H 0.96999 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3401 1.0654 0.0000 4 8 3.5884 0.5760 -0.0057 5 7 3.5958 -0.6331 -0.0038 6 6 2.3820 -1.1190 0.0039 7 7 2.0194 -2.4647 0.0087 8 6 2.9711 -3.4190 0.0061 9 8 4.1438 -3.1066 -0.0010 10 6 2.5824 -4.8614 0.0050 11 8 1.4157 -5.1755 0.1184 12 7 3.5274 -5.8139 -0.1219 13 6 4.9424 -5.4388 -0.1787 14 6 3.1397 -7.2242 -0.2031 15 1 2.0545 -7.3067 -0.1441 16 6 3.6247 -7.8110 -1.5303 17 6 3.7636 -7.9834 0.9395 18 1 4.3870 -7.4669 1.6544 19 6 3.5386 -9.3371 1.0722 20 7 2.7791 -9.9659 0.2020 21 14 4.3126 -10.2782 2.4882 22 1 3.8429 -9.7085 3.7766 23 1 3.9194 -11.7078 2.4059 24 1 5.7911 -10.1665 2.4073 25 1 -0.3633 0.0032 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3634 -0.8916 -0.5110 28 1 2.0554 2.1072 -0.0004 29 1 1.0821 -2.7144 0.0140 30 1 5.3271 -5.3174 0.8340 31 1 5.5052 -6.2200 -0.6898 32 1 5.0480 -4.5000 -0.7224 33 1 3.3357 -8.8602 -1.5909 34 1 3.1734 -7.2619 -2.3568 35 1 4.7099 -7.7286 -1.5891 36 1 2.6211 -10.9184 0.2951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116727374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = 16.178812 kcal Electronic energy + Delta-G solvation = -22020.050365 eV Core-core repulsion = 18509.137195 eV Total energy + Delta-G solvation = -3510.913171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.01341 -40.51894 -38.25656 -36.33626 -35.42850 -33.65441 -32.77496 -31.52349 -29.55617 -28.34750 -26.41921 -25.42538 -25.10214 -22.50561 -22.15332 -20.43772 -19.24459 -18.39834 -17.73775 -17.19573 -16.46986 -16.39669 -15.74219 -15.54779 -15.03318 -14.47214 -14.25850 -13.86013 -13.56344 -13.45310 -13.24198 -12.65355 -12.53492 -12.42785 -12.02799 -11.65714 -11.60059 -11.22596 -11.11632 -10.86076 -10.82361 -10.68665 -10.28833 -10.21991 -9.60082 -9.27639 -8.92412 -8.85255 -8.49160 -7.79180 -6.13519 -4.21905 1.32066 1.50923 2.33751 2.39101 3.16540 3.27098 3.31394 3.34215 3.64270 3.74803 4.11689 4.35158 4.56192 4.70424 4.76680 5.06257 5.18367 5.26766 5.36017 5.46416 5.76745 5.97742 6.11358 6.29967 6.53789 6.67466 6.70617 6.88115 6.94871 7.18956 7.31705 7.62620 7.74532 7.93135 8.05291 8.29095 8.30979 8.53157 8.82616 9.44382 10.91960 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033626 B = 0.003812 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.497870 B = 7343.213590 C = 7545.883824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.216 4.216 3 C -0.051 4.051 4 O 0.100 5.900 5 N -0.347 5.347 6 C 0.243 3.757 7 N -0.615 5.615 8 C 0.501 3.499 9 O -0.468 6.468 10 C 0.497 3.503 11 O -0.535 6.535 12 N -0.548 5.548 13 C 0.071 3.929 14 C 0.254 3.746 15 H 0.068 0.932 16 C -0.148 4.148 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.888 5.888 21 Si 0.902 3.098 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.218 0.782 29 H 0.432 0.568 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.013 0.987 35 H 0.034 0.966 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 19.454 -2.106 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.222 4.222 3 C -0.132 4.132 4 O 0.038 5.962 5 N -0.060 5.060 6 C -0.007 4.007 7 N -0.270 5.270 8 C 0.283 3.717 9 O -0.337 6.337 10 C 0.277 3.723 11 O -0.415 6.415 12 N -0.278 5.278 13 C -0.072 4.072 14 C 0.155 3.845 15 H 0.085 0.915 16 C -0.207 4.207 17 C -0.567 4.567 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.729 3.271 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.272 0.728 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.989 18.657 -2.110 18.881 hybrid contribution -0.833 -0.506 0.819 1.273 sum -2.822 18.151 -1.291 18.415 Atomic orbital electron populations 1.20111 0.86949 1.03494 1.02973 1.21046 0.98558 0.90412 1.12164 1.25598 0.83441 1.00835 1.03366 1.84930 1.28303 1.15143 1.67823 1.74481 1.18670 0.90497 1.22338 1.20502 0.89927 0.86650 1.03640 1.42500 1.12066 1.00472 1.71969 1.21181 0.85564 0.87979 0.76983 1.90750 1.16991 1.82635 1.43357 1.19427 0.86697 0.85019 0.81108 1.90721 1.17847 1.82072 1.50818 1.48282 1.06327 1.08365 1.64842 1.22171 0.81206 1.01545 1.02305 1.19203 0.98366 0.72423 0.94491 0.91463 1.22121 0.98945 1.04069 0.95518 1.21239 1.31554 0.93368 1.10561 0.92062 1.24877 0.94945 0.97329 0.96458 1.69857 1.37232 1.10077 1.35395 0.86491 0.79599 0.78600 0.82361 1.20168 1.21088 1.20108 0.90602 0.90561 0.90980 0.76550 0.72819 0.92804 0.90919 0.89480 0.88363 0.96755 0.94670 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.47 36.00 0.38 -0.13 16 2 C -0.22 -2.11 6.34 -104.23 -0.66 -2.77 16 3 C -0.05 -0.41 12.25 29.66 0.36 -0.05 16 4 O 0.10 1.22 11.19 17.05 0.19 1.41 16 5 N -0.35 -5.48 10.38 31.18 0.32 -5.15 16 6 C 0.24 3.45 7.90 -154.92 -1.22 2.23 16 7 N -0.61 -9.30 5.41 -11.85 -0.06 -9.36 16 8 C 0.50 9.27 7.74 -11.62 -0.09 9.18 16 9 O -0.47 -9.34 11.91 5.49 0.07 -9.27 16 10 C 0.50 10.56 7.73 -11.62 -0.09 10.47 16 11 O -0.54 -12.26 15.82 5.49 0.09 -12.17 16 12 N -0.55 -12.26 2.75 -175.80 -0.48 -12.75 16 13 C 0.07 1.39 8.76 59.85 0.52 1.91 16 14 C 0.25 6.48 2.62 -69.08 -0.18 6.30 16 15 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 16 C -0.15 -3.51 8.96 37.16 0.33 -3.18 16 17 C -0.53 -14.35 8.37 -34.44 -0.29 -14.64 16 18 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 21 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.22 0.63 8.06 -52.48 -0.42 0.20 16 29 H 0.43 5.57 8.25 -40.82 -0.34 5.23 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.39 6.44 -51.93 -0.33 1.05 16 32 H 0.09 1.64 5.35 -51.94 -0.28 1.36 16 33 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.03 0.78 6.67 -51.93 -0.35 0.43 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -32.66 310.43 -4.67 -37.32 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.04 Total: 2.31 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.03 Total: 11.04 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.40 Total: -51.35 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.34 Total: -20.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.66 -4.67 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116727374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.501 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds