Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35241 * 128.02466 * 2 1 4 4 O 1.34088 * 106.61919 * 180.25521 * 3 2 1 5 5 N 1.20912 * 111.75331 * 359.72930 * 4 3 2 6 6 C 1.30748 * 111.47025 * 359.97438 * 5 4 3 7 7 N 1.39366 * 126.89855 * 180.02562 * 6 5 4 8 8 C 1.34773 * 119.99774 * 0.02968 * 7 6 5 9 9 O 1.21357 * 120.00581 * 359.97438 * 8 7 6 10 10 C 1.49385 * 119.99366 * 180.27457 * 8 7 6 11 11 O 1.21356 * 120.00219 * 353.88826 * 10 8 7 12 12 N 1.34777 * 119.99724 * 173.89096 * 10 8 7 13 13 C 1.46500 * 119.99884 * 3.63254 * 12 10 8 14 14 C 1.46494 * 120.00041 * 183.64001 * 12 10 8 15 15 H 1.08995 * 109.47426 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47585 * 120.00165 * 14 12 10 17 17 C 1.50703 * 109.47051 * 239.99914 * 14 12 10 18 18 H 1.08005 * 119.99832 * 359.97438 * 17 14 12 19 19 C 1.37873 * 120.00241 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00129 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48498 * 109.46971 * 60.00182 * 21 19 17 23 23 H 1.48498 * 109.46872 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47337 * 300.00006 * 21 19 17 25 25 H 1.08994 * 109.47272 * 270.17852 * 1 2 3 26 26 H 1.09002 * 109.46927 * 30.18067 * 1 2 3 27 27 H 1.09002 * 109.47236 * 150.17968 * 1 2 3 28 28 H 1.08004 * 126.69202 * 359.97438 * 3 2 1 29 29 H 0.96997 * 119.99494 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.46937 * 83.99925 * 13 12 10 31 31 H 1.09004 * 109.47407 * 203.98922 * 13 12 10 32 32 H 1.08994 * 109.47483 * 323.99463 * 13 12 10 33 33 H 1.08996 * 109.47118 * 180.02562 * 16 14 12 34 34 H 1.09003 * 109.47002 * 299.99589 * 16 14 12 35 35 H 1.08997 * 109.47671 * 59.99618 * 16 14 12 36 36 H 0.96999 * 120.00185 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3401 1.0654 0.0000 4 8 3.5884 0.5760 -0.0057 5 7 3.5958 -0.6331 -0.0038 6 6 2.3820 -1.1190 0.0039 7 7 2.0194 -2.4647 0.0087 8 6 2.9711 -3.4190 0.0061 9 8 4.1438 -3.1066 -0.0010 10 6 2.5824 -4.8614 0.0050 11 8 1.4157 -5.1755 0.1184 12 7 3.5274 -5.8139 -0.1219 13 6 4.9424 -5.4388 -0.1787 14 6 3.1397 -7.2242 -0.2031 15 1 2.0545 -7.3067 -0.1441 16 6 3.6247 -7.8110 -1.5303 17 6 3.7636 -7.9834 0.9395 18 1 4.3870 -7.4669 1.6544 19 6 3.5386 -9.3371 1.0722 20 7 2.7791 -9.9659 0.2020 21 14 4.3126 -10.2782 2.4882 22 1 3.8429 -9.7085 3.7766 23 1 3.9194 -11.7078 2.4059 24 1 5.7911 -10.1665 2.4073 25 1 -0.3633 0.0032 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3634 -0.8916 -0.5110 28 1 2.0554 2.1072 -0.0004 29 1 1.0821 -2.7144 0.0140 30 1 5.3271 -5.3174 0.8340 31 1 5.5052 -6.2200 -0.6898 32 1 5.0480 -4.5000 -0.7224 33 1 3.3357 -8.8602 -1.5909 34 1 3.1734 -7.2619 -2.3568 35 1 4.7099 -7.7286 -1.5891 36 1 2.6211 -10.9184 0.2951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116727374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -6.103025 kcal Electronic energy + Delta-G solvation = -22021.016578 eV Core-core repulsion = 18509.137195 eV Total energy + Delta-G solvation = -3511.879384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.96981 -42.05340 -39.86934 -37.82107 -36.93097 -34.88568 -34.43577 -32.57879 -31.49966 -28.99222 -28.03986 -27.38074 -26.72348 -23.90598 -23.09057 -21.90975 -20.70241 -19.55510 -18.79156 -18.71683 -18.30680 -17.95705 -17.18637 -17.10311 -16.66720 -16.13517 -15.43186 -15.04393 -14.99356 -14.54228 -14.15653 -14.11455 -14.09074 -13.66497 -13.47753 -13.13269 -13.03090 -12.88775 -12.77748 -12.73851 -12.38925 -12.22955 -12.14364 -12.07294 -11.27858 -10.61439 -10.47890 -10.34296 -9.99537 -9.59558 -8.19861 -6.36457 0.00789 0.65587 0.98783 1.25397 1.41808 1.42877 1.51058 2.07379 2.26258 2.41905 2.54835 3.02584 3.08995 3.30246 3.73748 4.06416 4.28613 4.36119 4.60956 4.67831 4.82200 4.82943 4.83535 4.89455 4.94435 4.96301 5.12552 5.31901 5.32832 5.36154 5.57567 5.69471 5.89218 6.05093 6.32678 6.51140 6.66727 6.87113 7.34043 7.41362 8.84668 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033626 B = 0.003812 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.497870 B = 7343.213590 C = 7545.883824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.218 4.218 3 C -0.026 4.026 4 O 0.098 5.902 5 N -0.392 5.392 6 C 0.210 3.790 7 N -0.601 5.601 8 C 0.509 3.491 9 O -0.486 6.486 10 C 0.493 3.507 11 O -0.558 6.558 12 N -0.558 5.558 13 C 0.078 3.922 14 C 0.258 3.742 15 H 0.028 0.972 16 C -0.135 4.135 17 C -0.547 4.547 18 H 0.056 0.944 19 C 0.023 3.977 20 N -0.912 5.912 21 Si 0.965 3.035 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.266 1.266 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.274 0.726 29 H 0.441 0.559 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.047 0.953 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 21.610 -1.803 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.224 4.224 3 C -0.106 4.106 4 O 0.035 5.965 5 N -0.105 5.105 6 C -0.039 4.039 7 N -0.256 5.256 8 C 0.290 3.710 9 O -0.357 6.357 10 C 0.275 3.725 11 O -0.439 6.439 12 N -0.288 5.288 13 C -0.064 4.064 14 C 0.158 3.842 15 H 0.046 0.954 16 C -0.194 4.194 17 C -0.585 4.585 18 H 0.074 0.926 19 C -0.178 4.178 20 N -0.550 5.550 21 Si 0.789 3.211 22 H -0.203 1.203 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.102 0.898 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.290 0.710 29 H 0.282 0.718 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.125 20.843 -1.815 21.029 hybrid contribution -0.884 -1.008 0.715 1.519 sum -3.009 19.835 -1.099 20.092 Atomic orbital electron populations 1.20249 0.84578 1.04731 1.03911 1.21478 1.00052 0.88928 1.11901 1.26635 0.81200 1.02701 1.00110 1.84863 1.30350 1.13886 1.67419 1.74477 1.20158 0.92188 1.23639 1.20939 0.91095 0.86521 1.05346 1.42215 1.11754 1.00860 1.70759 1.20445 0.85844 0.87088 0.77577 1.90733 1.17557 1.82568 1.44837 1.19905 0.86169 0.86342 0.80087 1.90694 1.18765 1.82876 1.51534 1.48246 1.07640 1.07598 1.65321 1.22209 0.79665 1.02106 1.02419 1.18880 0.95972 0.74307 0.95064 0.95425 1.21927 0.99669 1.02698 0.95085 1.21457 1.31872 0.94001 1.11189 0.92556 1.25651 0.95275 0.98099 0.98753 1.69973 1.37912 1.10383 1.36702 0.85512 0.79113 0.77372 0.79056 1.20279 1.20375 1.19108 0.89754 0.87638 0.91473 0.71031 0.71792 0.93002 0.90449 0.88393 0.90443 0.95460 0.93444 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.47 71.24 0.75 -0.01 16 2 C -0.22 -3.67 6.34 -19.61 -0.12 -3.80 16 3 C -0.03 -0.32 12.25 67.13 0.82 0.50 16 4 O 0.10 2.21 11.19 71.20 0.80 3.00 16 5 N -0.39 -12.11 10.38 -56.34 -0.58 -12.69 16 6 C 0.21 5.75 7.90 134.15 1.06 6.81 16 7 N -0.60 -18.14 5.41 -310.80 -1.68 -19.82 16 8 C 0.51 19.08 7.74 87.25 0.68 19.75 16 9 O -0.49 -19.52 11.91 -3.27 -0.04 -19.56 16 10 C 0.49 21.46 7.73 87.25 0.67 22.13 16 11 O -0.56 -26.38 15.82 -3.26 -0.05 -26.43 16 12 N -0.56 -25.47 2.75 -828.48 -2.28 -27.75 16 13 C 0.08 3.07 8.76 127.77 1.12 4.19 16 14 C 0.26 13.51 2.62 44.25 0.12 13.63 16 15 H 0.03 1.66 6.90 -2.39 -0.02 1.64 16 16 C -0.14 -6.50 8.96 71.98 0.64 -5.85 16 17 C -0.55 -30.14 8.37 25.60 0.21 -29.92 16 18 H 0.06 3.09 7.65 -2.91 -0.02 3.07 16 19 C 0.02 1.24 5.30 84.65 0.45 1.69 16 20 N -0.91 -51.43 11.32 21.45 0.24 -51.19 16 21 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 28 H 0.27 -0.07 8.06 -2.91 -0.02 -0.09 16 29 H 0.44 11.35 8.25 -92.71 -0.76 10.59 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.93 6.44 -2.38 -0.02 2.91 16 32 H 0.10 3.68 5.35 -2.50 -0.01 3.66 16 33 H 0.08 4.06 6.07 -2.39 -0.01 4.04 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 2.11 6.67 -2.39 -0.02 2.09 16 36 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -72.67 310.43 5.19 -67.48 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.37 Total: 12.66 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 6.40 Total: 29.12 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.30 Total: -111.45 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: 0.71 Total: -42.99 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.67 5.19 -67.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116727374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.380 kcal (2) G-P(sol) polarization free energy of solvation -72.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds