Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35736 * 116.99626 * 2 1 4 4 C 1.39294 * 120.84726 * 270.01840 * 3 2 1 5 5 C 1.50699 * 120.45366 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.09066 * 179.97438 * 4 3 2 7 7 N 1.31974 * 120.82628 * 359.97438 * 6 4 3 8 8 C 1.31953 * 121.86307 * 359.74053 * 7 6 4 9 9 C 1.50698 * 119.59099 * 180.26944 * 8 7 6 10 10 S 1.81398 * 109.47003 * 270.27361 * 9 8 7 11 11 C 1.81408 * 102.99781 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46848 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47083 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47302 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46887 * 120.00019 * 17 15 13 20 20 H 1.48505 * 109.47076 * 239.99466 * 17 15 13 21 21 C 1.37993 * 120.81929 * 0.54865 * 8 7 6 22 22 C 1.50703 * 120.45375 * 179.72308 * 21 8 7 23 23 H 1.09004 * 109.46550 * 299.99844 * 1 2 3 24 24 H 1.09000 * 109.47372 * 59.99470 * 1 2 3 25 25 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47111 * 89.99431 * 5 4 3 27 27 H 1.08997 * 109.47119 * 209.99648 * 5 4 3 28 28 H 1.09002 * 109.46963 * 329.99330 * 5 4 3 29 29 H 1.07994 * 119.58539 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.47096 * 30.27255 * 9 8 7 31 31 H 1.09000 * 109.47149 * 150.27268 * 9 8 7 32 32 H 1.09002 * 109.46688 * 299.99791 * 11 10 9 33 33 H 1.08997 * 109.46875 * 59.99915 * 11 10 9 34 34 H 1.09002 * 109.47211 * 299.99354 * 12 11 10 35 35 H 1.08999 * 109.48023 * 60.00005 * 12 11 10 36 36 H 0.97004 * 120.00112 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47152 * 269.72048 * 22 21 8 38 38 H 1.09001 * 109.46980 * 149.72149 * 22 21 8 39 39 H 1.09004 * 109.47113 * 29.72129 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 2.3691 1.8460 -1.1959 5 6 2.0397 1.2017 -2.5178 6 6 2.9945 3.0749 -1.1536 7 7 3.2850 3.6465 -0.0001 8 6 2.9893 3.0777 1.1532 9 6 3.3392 3.7792 2.4403 10 16 5.0071 3.2913 2.9607 11 6 5.2427 4.2217 4.5001 12 6 6.6270 3.9148 5.0746 13 6 6.8226 4.6872 6.3538 14 1 6.0380 5.3327 6.7201 15 6 8.0034 4.5705 7.0560 16 7 8.9589 3.7848 6.6098 17 14 8.2459 5.5285 8.6412 18 1 7.0308 6.3342 8.9235 19 1 8.4837 4.5818 9.7602 20 1 9.4163 6.4316 8.4997 21 6 2.3689 1.8459 1.1955 22 6 2.0405 1.2009 2.5173 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.0448 1.5131 -2.8358 27 1 2.7724 1.5085 -3.2641 28 1 2.0637 0.1173 -2.4094 29 1 3.2489 3.5757 -2.0760 30 1 3.3076 4.8578 2.2864 31 1 2.6218 3.5011 3.2123 32 1 5.1633 5.2893 4.2951 33 1 4.4775 3.9321 5.2203 34 1 6.7069 2.8472 5.2796 35 1 7.3920 4.2046 4.3543 36 1 9.7898 3.7030 7.1036 37 1 2.8772 0.5793 2.8361 38 1 1.1493 0.5828 2.4086 39 1 1.8575 1.9743 3.2634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116762045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = -23.545909 kcal Electronic energy + Delta-G solvation = -19011.843341 eV Core-core repulsion = 16045.500791 eV Total energy + Delta-G solvation = -2966.342549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.97625 -38.30615 -34.60591 -33.66427 -32.76336 -30.84844 -29.95712 -28.27462 -26.63981 -25.88514 -25.10488 -22.52525 -21.37559 -20.80274 -17.85174 -17.69927 -16.49738 -16.18291 -15.49921 -15.14431 -14.68443 -14.56896 -14.46082 -14.13249 -13.89601 -13.69107 -13.26184 -13.06548 -12.95289 -12.56543 -12.48586 -12.28315 -12.14175 -11.89882 -11.73766 -11.46504 -11.02749 -10.59306 -10.30647 -10.18118 -9.69677 -9.65557 -9.55289 -9.30907 -9.02522 -8.68377 -8.41013 -7.09626 -6.04515 -4.09025 0.75880 0.94815 2.23858 3.18808 3.27712 3.29332 3.36995 3.40699 3.73231 4.13144 4.43105 4.48952 4.52602 4.74031 4.88151 4.89649 4.97396 5.04142 5.18697 5.26909 5.28762 5.31094 5.38875 5.47347 5.53272 5.68965 5.78580 5.92285 6.01576 6.03913 6.07097 6.20064 6.38999 6.74787 7.10532 7.58865 7.67460 7.89369 7.92040 8.29031 8.96230 9.54780 11.06337 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.003014 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.564665 B = 9287.086427 C = 9595.053108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.133 3.867 4 C -0.158 4.158 5 C -0.105 4.105 6 C 0.108 3.892 7 N -0.467 5.467 8 C 0.158 3.842 9 C -0.050 4.050 10 S -0.260 6.260 11 C -0.062 4.062 12 C 0.037 3.963 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.132 4.132 22 C -0.109 4.109 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.256 -5.924 -15.804 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.081 3.919 4 C -0.162 4.162 5 C -0.162 4.162 6 C -0.050 4.050 7 N -0.176 5.176 8 C 0.020 3.980 9 C -0.198 4.198 10 S -0.031 6.031 11 C -0.209 4.209 12 C -0.001 4.001 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.136 4.136 22 C -0.166 4.166 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.177 0.823 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.890 -6.025 -16.251 24.909 hybrid contribution -1.105 0.678 1.391 1.901 sum -18.995 -5.347 -14.860 24.703 Atomic orbital electron populations 1.23016 0.78469 1.03511 1.00882 1.85961 1.20014 1.24232 1.94197 1.18586 0.96205 0.85798 0.91262 1.21238 1.02525 0.96381 0.96014 1.20608 1.01729 1.01210 0.92686 1.22535 0.94793 0.91552 0.96112 1.67468 1.16578 1.35796 0.97730 1.20226 0.93902 0.91075 0.92787 1.22186 0.99262 1.03184 0.95158 1.87190 1.17342 1.64698 1.33899 1.23739 1.05175 0.99831 0.92204 1.18903 0.87750 0.97959 0.95504 1.21133 1.01051 1.26869 1.06947 0.92382 1.25018 0.95888 0.95438 0.97965 1.69983 1.05978 1.37703 1.39223 0.86467 0.78177 0.79787 0.83159 1.19693 1.20905 1.20897 1.21001 1.01112 0.95034 0.96480 1.20742 1.02482 1.00794 0.92551 0.93248 0.93428 0.88434 0.91317 0.90946 0.90802 0.82317 0.88575 0.88625 0.91235 0.91312 0.95526 0.95484 0.92836 0.89542 0.91627 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.82 101.05 1.09 1.34 16 2 O -0.33 -3.56 8.90 -18.92 -0.17 -3.73 16 3 C 0.13 1.63 5.73 -38.82 -0.22 1.41 16 4 C -0.16 -1.76 5.91 -104.34 -0.62 -2.38 16 5 C -0.11 -0.81 9.84 36.00 0.35 -0.46 16 6 C 0.11 1.30 10.85 -17.60 -0.19 1.11 16 7 N -0.47 -7.02 10.27 -9.55 -0.10 -7.12 16 8 C 0.16 2.35 6.04 -82.63 -0.50 1.85 16 9 C -0.05 -0.76 5.82 36.00 0.21 -0.55 16 10 S -0.26 -5.02 21.72 -107.50 -2.33 -7.36 16 11 C -0.06 -1.30 5.88 37.16 0.22 -1.09 16 12 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 17 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.13 -1.76 5.91 -104.34 -0.62 -2.38 16 22 C -0.11 -1.26 9.43 36.01 0.34 -0.92 16 23 H 0.05 0.33 7.34 -51.93 -0.38 -0.05 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.59 7.62 -51.93 -0.40 0.20 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 31 H 0.10 1.25 5.93 -51.92 -0.31 0.94 16 32 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.64 6.53 -51.93 -0.34 0.30 16 39 H 0.07 0.80 5.94 -51.93 -0.31 0.49 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -32.37 339.65 -8.17 -40.54 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.92 Total: -3.24 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.48 Total: -14.57 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.64 Total: -33.26 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.17 Total: -3.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -2.33 Total: -7.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.37 -8.17 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116762045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.992 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds