Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35736 * 116.99626 * 2 1 4 4 C 1.39294 * 120.84726 * 270.01840 * 3 2 1 5 5 C 1.50699 * 120.45366 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.09066 * 179.97438 * 4 3 2 7 7 N 1.31974 * 120.82628 * 359.97438 * 6 4 3 8 8 C 1.31953 * 121.86307 * 359.74053 * 7 6 4 9 9 C 1.50698 * 119.59099 * 180.26944 * 8 7 6 10 10 S 1.81398 * 109.47003 * 270.27361 * 9 8 7 11 11 C 1.81408 * 102.99781 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46848 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47083 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47302 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46887 * 120.00019 * 17 15 13 20 20 H 1.48505 * 109.47076 * 239.99466 * 17 15 13 21 21 C 1.37993 * 120.81929 * 0.54865 * 8 7 6 22 22 C 1.50703 * 120.45375 * 179.72308 * 21 8 7 23 23 H 1.09004 * 109.46550 * 299.99844 * 1 2 3 24 24 H 1.09000 * 109.47372 * 59.99470 * 1 2 3 25 25 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47111 * 89.99431 * 5 4 3 27 27 H 1.08997 * 109.47119 * 209.99648 * 5 4 3 28 28 H 1.09002 * 109.46963 * 329.99330 * 5 4 3 29 29 H 1.07994 * 119.58539 * 180.02562 * 6 4 3 30 30 H 1.09004 * 109.47096 * 30.27255 * 9 8 7 31 31 H 1.09000 * 109.47149 * 150.27268 * 9 8 7 32 32 H 1.09002 * 109.46688 * 299.99791 * 11 10 9 33 33 H 1.08997 * 109.46875 * 59.99915 * 11 10 9 34 34 H 1.09002 * 109.47211 * 299.99354 * 12 11 10 35 35 H 1.08999 * 109.48023 * 60.00005 * 12 11 10 36 36 H 0.97004 * 120.00112 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.47152 * 269.72048 * 22 21 8 38 38 H 1.09001 * 109.46980 * 149.72149 * 22 21 8 39 39 H 1.09004 * 109.47113 * 29.72129 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 2.3691 1.8460 -1.1959 5 6 2.0397 1.2017 -2.5178 6 6 2.9945 3.0749 -1.1536 7 7 3.2850 3.6465 -0.0001 8 6 2.9893 3.0777 1.1532 9 6 3.3392 3.7792 2.4403 10 16 5.0071 3.2913 2.9607 11 6 5.2427 4.2217 4.5001 12 6 6.6270 3.9148 5.0746 13 6 6.8226 4.6872 6.3538 14 1 6.0380 5.3327 6.7201 15 6 8.0034 4.5705 7.0560 16 7 8.9589 3.7848 6.6098 17 14 8.2459 5.5285 8.6412 18 1 7.0308 6.3342 8.9235 19 1 8.4837 4.5818 9.7602 20 1 9.4163 6.4316 8.4997 21 6 2.3689 1.8459 1.1955 22 6 2.0405 1.2009 2.5173 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.0448 1.5131 -2.8358 27 1 2.7724 1.5085 -3.2641 28 1 2.0637 0.1173 -2.4094 29 1 3.2489 3.5757 -2.0760 30 1 3.3076 4.8578 2.2864 31 1 2.6218 3.5011 3.2123 32 1 5.1633 5.2893 4.2951 33 1 4.4775 3.9321 5.2203 34 1 6.7069 2.8472 5.2796 35 1 7.3920 4.2046 4.3543 36 1 9.7898 3.7030 7.1036 37 1 2.8772 0.5793 2.8361 38 1 1.1493 0.5828 2.4086 39 1 1.8575 1.9743 3.2634 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116762045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -42.357266 kcal Electronic energy + Delta-G solvation = -19012.659062 eV Core-core repulsion = 16045.500791 eV Total energy + Delta-G solvation = -2967.158271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88516 -39.14166 -35.78039 -35.51977 -33.65444 -32.90912 -30.94144 -29.01841 -27.50653 -27.30078 -26.56131 -23.56997 -23.05039 -21.93157 -18.75521 -18.67754 -18.60475 -17.24514 -16.65080 -16.50675 -16.09849 -15.67115 -15.51401 -15.38810 -15.15383 -14.65830 -14.49189 -14.18917 -14.06932 -13.77483 -13.55741 -13.23438 -13.21365 -13.16794 -12.93018 -12.73494 -12.60742 -12.38317 -12.16653 -11.71227 -11.36202 -11.06662 -10.86830 -10.61534 -10.56723 -10.22759 -9.68750 -8.65041 -8.22971 -6.36678 -0.27069 0.02905 0.89414 1.41456 1.42055 1.55603 1.71268 2.40627 2.42287 2.77835 3.10388 3.14386 3.60618 3.64100 3.82458 4.10826 4.14095 4.27042 4.33813 4.38053 4.38179 4.41024 4.44657 4.53744 4.62792 4.71856 4.75319 4.78723 4.87251 5.03786 5.09227 5.18547 5.21790 5.38427 5.49315 5.50679 5.73964 6.10793 6.32135 6.77975 6.91696 7.32892 8.89171 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.003014 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.564665 B = 9287.086427 C = 9595.053108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.126 3.874 4 C -0.152 4.152 5 C -0.102 4.102 6 C 0.099 3.901 7 N -0.496 5.496 8 C 0.132 3.868 9 C -0.030 4.030 10 S -0.297 6.297 11 C -0.049 4.049 12 C 0.045 3.955 13 C -0.540 4.540 14 H 0.069 0.931 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.973 3.027 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.279 1.279 21 C -0.141 4.141 22 C -0.106 4.106 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.187 0.813 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.083 0.917 34 H -0.003 1.003 35 H -0.007 1.007 36 H 0.265 0.735 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.408 -5.741 -16.361 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.257 6.257 3 C 0.075 3.925 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.059 4.059 7 N -0.206 5.206 8 C -0.005 4.005 9 C -0.178 4.178 10 S -0.068 6.068 11 C -0.196 4.196 12 C 0.006 3.994 13 C -0.580 4.580 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.181 1.181 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.146 4.146 22 C -0.163 4.163 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.137 0.863 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.203 0.797 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.058 -5.841 -16.801 26.809 hybrid contribution -0.539 0.517 1.379 1.568 sum -20.597 -5.324 -15.422 26.276 Atomic orbital electron populations 1.23289 0.76344 1.05260 1.01640 1.85942 1.22030 1.23444 1.94247 1.18765 0.96254 0.86159 0.91343 1.21612 1.00837 0.95837 0.97231 1.20691 1.03337 1.00777 0.91102 1.23032 0.94505 0.92155 0.96160 1.67413 1.17568 1.36978 0.98615 1.20155 0.95775 0.92066 0.92521 1.22162 0.96004 1.03308 0.96288 1.87256 1.21933 1.64722 1.32926 1.23372 1.02316 1.00457 0.93499 1.18671 0.90038 0.95852 0.94806 1.21578 1.01598 1.27115 1.07671 0.91275 1.26050 0.95488 0.96384 1.01927 1.70128 1.06661 1.39377 1.41069 0.85275 0.78557 0.78284 0.78170 1.18137 1.20262 1.20425 1.21178 1.01020 0.94720 0.97664 1.20741 1.02644 1.00909 0.92031 0.92956 0.92226 0.86250 0.89230 0.89385 0.90968 0.79662 0.88402 0.86510 0.90550 0.89861 0.98452 0.98840 0.92584 0.91009 0.89797 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 113.37 1.23 1.55 16 2 O -0.34 -6.74 8.90 -90.60 -0.81 -7.55 16 3 C 0.13 2.92 5.73 22.77 0.13 3.05 16 4 C -0.15 -3.08 5.91 -19.68 -0.12 -3.19 16 5 C -0.10 -1.27 9.84 71.24 0.70 -0.57 16 6 C 0.10 2.24 10.85 84.60 0.92 3.16 16 7 N -0.50 -14.64 10.27 -184.13 -1.89 -16.53 16 8 C 0.13 3.87 6.04 42.48 0.26 4.12 16 9 C -0.03 -0.90 5.82 71.24 0.41 -0.48 16 10 S -0.30 -11.72 21.72 -56.49 -1.23 -12.95 16 11 C -0.05 -2.09 5.88 71.98 0.42 -1.66 16 12 C 0.04 2.46 4.98 29.85 0.15 2.61 16 13 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 14 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 17 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 C -0.14 -3.66 5.91 -19.68 -0.12 -3.77 16 22 C -0.11 -2.37 9.43 71.24 0.67 -1.70 16 23 H 0.05 0.57 7.34 -2.39 -0.02 0.56 16 24 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.07 0.96 7.62 -2.39 -0.02 0.95 16 29 H 0.19 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.12 2.93 5.93 -2.39 -0.01 2.91 16 32 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 1.50 6.53 -2.39 -0.02 1.49 16 39 H 0.08 1.63 5.94 -2.38 -0.01 1.61 16 Total: -1.00 -71.60 339.65 4.77 -66.83 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.03 Total: 8.50 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 5.35 Total: -27.07 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.61 Total: -73.98 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.81 Total: -7.55 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -11.72 SS G_CDS: -1.23 Total: -12.95 kcal Total: -71.60 4.77 -66.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116762045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.472 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds