Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 17 22 22 F 1.39901 * 109.46827 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 25 25 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 27 27 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 28 28 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 29 29 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 32 32 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 33 33 H 1.09000 * 109.47607 * 299.99737 * 20 19 17 34 34 H 1.09005 * 109.47442 * 60.00167 * 20 19 17 35 35 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 36 36 H 1.08993 * 109.46785 * 60.00206 * 21 20 19 37 37 H 1.07998 * 120.03894 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0066 19 6 10.0444 -4.0176 2.3636 20 6 11.5665 -4.0931 2.2288 21 6 12.1980 -4.1806 3.6198 22 9 13.5898 -4.2502 3.4965 23 6 5.3549 -2.4724 -0.2272 24 1 -0.4849 0.8401 -0.0004 25 1 2.1493 -3.5267 0.0145 26 1 3.2702 -5.7081 -0.1897 27 1 5.7197 -5.8204 -0.4050 28 1 7.7494 -4.6563 -1.0449 29 1 7.8421 -2.8801 -0.9753 30 1 7.5192 -3.8578 1.6545 31 1 9.7738 -3.1338 2.9413 32 1 9.6803 -4.9100 2.8728 33 1 11.8368 -4.9771 1.6513 34 1 11.9310 -3.2009 1.7195 35 1 11.9278 -3.2968 4.1977 36 1 11.8336 -5.0729 4.1287 37 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118669750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = -107.153800 kcal Electronic energy + Delta-G solvation = -20513.322805 eV Core-core repulsion = 16977.141569 eV Total energy + Delta-G solvation = -3536.181236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.89432 -39.95356 -39.22605 -37.07072 -34.73962 -34.24342 -32.48651 -31.02896 -29.51064 -27.88339 -25.72850 -25.02189 -22.41945 -21.87731 -20.77580 -20.44180 -17.96603 -17.61565 -16.91640 -16.84661 -16.25095 -15.67612 -15.54837 -15.30072 -15.03724 -14.92345 -14.24053 -13.93937 -13.70197 -13.63450 -13.39607 -12.73687 -12.65313 -12.31932 -12.20211 -12.11587 -11.76692 -11.51983 -11.37365 -10.99889 -10.99149 -10.93006 -10.81225 -10.25497 -10.02942 -9.51187 -9.12489 -8.97093 -8.39101 -7.53747 -6.50504 -4.18064 1.74943 2.09382 2.52627 3.14346 3.19315 3.21250 3.33522 4.15834 4.24599 4.38372 4.40999 4.41189 4.60638 4.67768 4.88580 4.90660 4.99452 5.08018 5.17329 5.34743 5.39068 5.57159 5.62206 5.69208 5.78917 5.89195 5.95766 6.09377 6.34472 6.36330 6.61874 6.93982 7.05355 7.15030 7.40028 7.47350 7.68355 7.93000 8.11747 8.84248 9.44758 10.56867 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002965 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.941890 B = 9439.972972 C =10224.380842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.156 3.844 11 C -0.212 4.212 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.075 4.075 15 C 0.167 3.833 16 N -0.722 5.722 17 C 0.511 3.489 18 O -0.545 6.545 19 C -0.140 4.140 20 C -0.138 4.138 21 C 0.061 3.939 22 F -0.219 7.219 23 C -0.172 4.172 24 H 0.280 0.720 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.404 0.596 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.233 -8.462 6.313 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.120 6.120 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.076 4.076 15 C 0.044 3.956 16 N -0.373 5.373 17 C 0.297 3.703 18 O -0.423 6.423 19 C -0.180 4.180 20 C -0.177 4.177 21 C 0.006 3.994 22 F -0.200 7.200 23 C -0.192 4.192 24 H 0.091 0.909 25 H 0.152 0.848 26 H 0.131 0.869 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.640 -8.079 5.608 19.329 hybrid contribution -0.368 0.651 0.336 0.820 sum 16.272 -7.428 5.944 18.849 Atomic orbital electron populations 1.69642 1.05592 1.28633 1.47556 1.24475 0.95034 0.98893 0.95530 0.86175 0.80278 0.81359 0.79058 1.19805 1.20711 1.18382 1.20762 0.76765 0.96672 1.52539 0.87579 1.83574 1.22709 1.25562 1.80157 1.19060 0.91554 0.85640 0.93327 1.21376 1.01346 0.91924 1.08493 1.20811 0.94156 0.96861 0.97712 1.20548 0.93870 0.96725 1.09484 1.19262 0.93361 0.93006 1.01987 1.20157 0.88942 1.02519 0.83969 1.46165 1.06637 1.74625 1.09878 1.20571 0.82205 0.76120 0.91428 1.90715 1.61497 1.49895 1.40155 1.21553 0.96020 1.04912 0.95531 1.21906 0.93712 1.05369 0.96676 1.22013 0.75651 1.03459 0.98258 1.92772 1.31910 1.98016 1.97313 1.20078 0.91987 0.97223 1.09911 0.90932 0.84807 0.86945 0.87298 0.90852 0.90851 0.76145 0.88375 0.88461 0.89959 0.89908 0.90657 0.90708 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 13.96 55.48 0.77 -23.88 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.04 28.62 -169.99 -4.86 16.18 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -10.63 9.95 30.89 0.31 -10.32 16 8 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 9 O -0.22 -5.42 8.59 0.05 0.00 -5.41 16 10 C 0.16 3.38 6.65 -39.11 -0.26 3.12 16 11 C -0.21 -4.25 9.17 -39.40 -0.36 -4.61 16 12 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.19 -2.80 9.70 -39.54 -0.38 -3.18 16 14 C -0.08 -1.15 5.25 -104.65 -0.55 -1.70 16 15 C 0.17 2.19 5.80 -5.19 -0.03 2.16 16 16 N -0.72 -7.99 5.55 -61.47 -0.34 -8.33 16 17 C 0.51 5.80 7.83 -10.98 -0.09 5.71 16 18 O -0.55 -8.40 15.98 5.56 0.09 -8.31 16 19 C -0.14 -0.99 5.70 -27.89 -0.16 -1.15 16 20 C -0.14 -1.10 4.96 -26.73 -0.13 -1.24 16 21 C 0.06 0.39 7.55 37.16 0.28 0.67 16 22 F -0.22 -2.16 17.36 2.25 0.04 -2.12 16 23 C -0.17 -3.13 9.65 -39.39 -0.38 -3.51 16 24 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.40 3.78 8.46 -40.82 -0.35 3.43 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -30.96 326.06 -6.34 -37.30 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.70 Total: 3.71 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.25 Total: -14.05 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.43 Total: -32.21 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.96 -6.34 -37.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118669750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.857 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds