Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47170 * 269.97797 * 15 14 13 17 17 C 1.34777 * 119.99835 * 179.97438 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.52991 * 109.47075 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47091 * 180.02562 * 20 19 17 22 22 F 1.39901 * 109.46827 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 24 24 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 25 25 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 27 27 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 28 28 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 29 29 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 32 32 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 33 33 H 1.09000 * 109.47607 * 299.99737 * 20 19 17 34 34 H 1.09005 * 109.47442 * 60.00167 * 20 19 17 35 35 H 1.08993 * 109.47094 * 299.99787 * 21 20 19 36 36 H 1.08993 * 109.46785 * 60.00206 * 21 20 19 37 37 H 1.07998 * 120.03894 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 7 8.0830 -3.8566 0.8651 17 6 9.4225 -3.9320 0.9936 18 8 10.1274 -3.9301 0.0066 19 6 10.0444 -4.0176 2.3636 20 6 11.5665 -4.0931 2.2288 21 6 12.1980 -4.1806 3.6198 22 9 13.5898 -4.2502 3.4965 23 6 5.3549 -2.4724 -0.2272 24 1 -0.4849 0.8401 -0.0004 25 1 2.1493 -3.5267 0.0145 26 1 3.2702 -5.7081 -0.1897 27 1 5.7197 -5.8204 -0.4050 28 1 7.7494 -4.6563 -1.0449 29 1 7.8421 -2.8801 -0.9753 30 1 7.5192 -3.8578 1.6545 31 1 9.7738 -3.1338 2.9413 32 1 9.6803 -4.9100 2.8728 33 1 11.8368 -4.9771 1.6513 34 1 11.9310 -3.2009 1.7195 35 1 11.9278 -3.2968 4.1977 36 1 11.8336 -5.0729 4.1287 37 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118669750.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = -127.187653 kcal Electronic energy + Delta-G solvation = -20514.191538 eV Core-core repulsion = 16977.141569 eV Total energy + Delta-G solvation = -3537.049969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.52637 -41.12696 -40.58224 -38.60045 -35.82271 -34.93841 -34.45915 -32.30324 -31.01685 -28.70242 -27.32788 -26.36611 -23.38567 -23.03597 -22.24122 -21.31877 -19.71582 -19.07877 -18.02013 -17.43377 -17.12817 -16.86524 -16.76225 -16.33940 -16.21770 -15.79984 -15.71263 -15.65296 -15.00062 -14.68818 -14.43343 -14.31163 -14.14113 -13.85697 -13.36748 -13.12579 -12.87384 -12.58151 -12.47698 -12.38620 -12.35785 -11.97635 -11.94588 -11.51592 -11.33342 -11.02032 -10.90797 -10.10519 -9.79138 -9.13229 -8.50824 -6.23690 0.34567 0.63867 1.31675 1.34978 1.51115 1.66416 2.25952 2.26913 2.78849 2.97546 3.15344 3.65356 3.76680 3.78711 3.91882 4.05298 4.20957 4.26047 4.33929 4.39813 4.46724 4.49099 4.64349 4.68875 4.73838 4.84104 4.91999 5.04122 5.18115 5.28307 5.36144 5.42147 5.62143 5.68190 5.74348 5.88443 6.18484 6.57309 6.83707 7.25926 7.57416 8.60591 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002965 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.941890 B = 9439.972972 C =10224.380842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.398 4.398 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.119 3.881 11 C -0.229 4.229 12 C -0.074 4.074 13 C -0.159 4.159 14 C -0.060 4.060 15 C 0.172 3.828 16 N -0.715 5.715 17 C 0.508 3.492 18 O -0.590 6.590 19 C -0.130 4.130 20 C -0.136 4.136 21 C 0.059 3.941 22 F -0.241 7.241 23 C -0.171 4.171 24 H 0.285 0.715 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.415 0.585 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.442 -9.946 7.385 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.152 6.152 10 C 0.071 3.929 11 C -0.248 4.248 12 C -0.091 4.091 13 C -0.178 4.178 14 C -0.061 4.061 15 C 0.049 3.951 16 N -0.367 5.367 17 C 0.296 3.704 18 O -0.471 6.471 19 C -0.169 4.169 20 C -0.175 4.175 21 C 0.004 3.996 22 F -0.222 7.222 23 C -0.190 4.190 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.162 0.838 27 H 0.167 0.833 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.252 0.748 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 18.866 -9.604 6.703 22.205 hybrid contribution -0.849 0.788 -0.035 1.159 sum 18.016 -8.816 6.668 21.137 Atomic orbital electron populations 1.69725 1.06884 1.29587 1.50110 1.25254 0.95843 1.02094 0.95590 0.85242 0.78864 0.77602 0.79173 1.19355 1.19296 1.18589 1.20703 0.78037 0.96130 1.52577 0.89889 1.83519 1.21254 1.27408 1.83066 1.19578 0.92950 0.85215 0.95202 1.21410 1.00442 0.93306 1.09652 1.21147 0.95234 0.96403 0.96358 1.21031 0.93115 0.98227 1.05397 1.19469 0.94658 0.91970 0.99964 1.20017 0.87092 1.02727 0.85300 1.46064 1.06900 1.74359 1.09408 1.21322 0.81772 0.74673 0.92604 1.90706 1.62392 1.51920 1.42083 1.21583 0.94680 1.07606 0.93074 1.21846 0.94716 1.03518 0.97418 1.22224 0.74111 1.05783 0.97469 1.92729 1.33953 1.98191 1.97371 1.20273 0.90568 0.98866 1.09314 0.90583 0.87234 0.83832 0.83306 0.89868 0.91667 0.74825 0.85867 0.85247 0.91681 0.92108 0.88523 0.88153 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 13.96 21.61 0.30 -53.72 16 2 C 0.01 0.61 5.49 84.83 0.47 1.07 16 3 Si 0.97 44.43 28.62 68.60 1.96 46.40 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.40 -22.71 9.95 67.92 0.68 -22.03 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.76 8.59 -22.74 -0.20 -12.95 16 10 C 0.12 5.22 6.65 22.58 0.15 5.37 16 11 C -0.23 -9.24 9.17 22.39 0.21 -9.04 16 12 C -0.07 -2.22 10.04 22.25 0.22 -1.99 16 13 C -0.16 -4.05 9.70 22.30 0.22 -3.83 16 14 C -0.06 -1.64 5.25 -19.88 -0.10 -1.74 16 15 C 0.17 3.96 5.80 85.64 0.50 4.45 16 16 N -0.72 -13.32 5.55 -466.78 -2.59 -15.91 16 17 C 0.51 10.11 7.83 87.66 0.69 10.79 16 18 O -0.59 -17.33 15.98 -3.03 -0.05 -17.38 16 19 C -0.13 -1.34 5.70 29.85 0.17 -1.17 16 20 C -0.14 -1.90 4.96 30.59 0.15 -1.75 16 21 C 0.06 0.58 7.55 71.98 0.54 1.13 16 22 F -0.24 -4.41 17.36 44.97 0.78 -3.63 16 23 C -0.17 -5.99 9.65 22.39 0.22 -5.77 16 24 H 0.28 15.31 8.31 -92.71 -0.77 14.53 16 25 H 0.11 4.94 5.64 -2.91 -0.02 4.92 16 26 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 28 H 0.08 1.82 8.09 -2.38 -0.02 1.80 16 29 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 30 H 0.42 6.02 8.46 -92.71 -0.78 5.24 16 31 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 34 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -71.71 326.06 4.62 -67.09 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.31 Total: 14.61 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 4.10 Total: -24.51 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -2.29 Total: -69.63 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.24 Total: -30.33 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.96 Total: 46.40 kcal Total: -71.71 4.62 -67.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118669750.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.095 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds