Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47461 * 2 1 4 4 C 1.50694 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.33391 * 125.20581 * 89.99678 * 4 3 2 6 6 C 1.38427 * 114.92102 * 180.02562 * 5 4 3 7 7 C 1.33383 * 114.91996 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.20105 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47340 * 89.99621 * 8 7 6 10 10 C 1.47949 * 110.99902 * 170.00158 * 9 8 7 11 11 C 1.53936 * 86.18061 * 222.41455 * 10 9 8 12 12 O 1.42890 * 113.73483 * 269.25475 * 11 10 9 13 13 C 1.50706 * 113.72978 * 138.07846 * 11 10 9 14 14 H 1.08001 * 120.00427 * 3.97315 * 13 11 10 15 15 C 1.37886 * 119.99589 * 183.97651 * 13 11 10 16 16 N 1.31513 * 119.99840 * 185.13516 * 15 13 11 17 17 Si 1.86794 * 119.99974 * 5.12882 * 15 13 11 18 18 H 1.48499 * 109.47494 * 270.00154 * 17 15 13 19 19 H 1.48502 * 109.47096 * 30.00527 * 17 15 13 20 20 H 1.48504 * 109.47236 * 150.00080 * 17 15 13 21 21 C 1.47951 * 110.99822 * 70.63960 * 9 8 7 22 22 S 1.75881 * 109.59594 * 0.23737 * 7 6 5 23 23 H 1.09003 * 109.46873 * 60.00080 * 1 2 3 24 24 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47316 * 300.00118 * 1 2 3 26 26 H 1.08997 * 109.47316 * 239.99882 * 2 1 3 27 27 H 1.09003 * 109.46873 * 119.99920 * 2 1 3 28 28 H 1.09004 * 109.47163 * 59.99312 * 3 2 1 29 29 H 1.09003 * 109.47012 * 299.99835 * 3 2 1 30 30 H 1.07996 * 122.53450 * 0.06572 * 5 4 3 31 31 H 1.07996 * 122.53325 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.46872 * 329.99274 * 8 7 6 33 33 H 1.09004 * 109.46813 * 209.99711 * 8 7 6 34 34 H 1.09002 * 113.76401 * 108.09725 * 10 9 8 35 35 H 1.09002 * 113.86317 * 336.74978 * 10 9 8 36 36 H 0.96708 * 113.99980 * 172.62784 * 12 11 10 37 37 H 0.96998 * 120.00034 * 354.95323 * 16 15 13 38 38 H 1.09000 * 113.76515 * 23.26452 * 21 9 8 39 39 H 1.09003 * 113.76159 * 251.89748 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3165 1.4423 -1.0890 6 6 5.6784 1.4418 -0.8412 7 6 6.0149 1.4410 0.4495 8 6 7.4257 1.4398 0.9795 9 7 7.8851 2.8245 1.1521 10 6 9.1668 2.8697 1.8898 11 6 8.5633 4.0581 2.6599 12 8 8.8367 5.3278 2.0642 13 6 8.8484 4.0297 4.1394 14 1 9.4821 3.2590 4.5527 15 6 8.3002 4.9879 4.9656 16 7 8.6286 5.0245 6.2386 17 14 7.0912 6.2341 4.2768 18 1 7.8313 7.4284 3.7959 19 1 6.3441 5.6265 3.1464 20 1 6.1369 6.6383 5.3404 21 6 7.1886 3.4771 2.2826 22 16 4.5603 1.4341 1.4382 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9078 1.4431 -2.0886 31 1 6.4128 1.4411 -1.6331 32 1 8.0784 0.9257 0.2740 33 1 7.4524 0.9256 1.9402 34 1 10.0218 3.1373 1.2689 35 1 9.3500 1.9920 2.5098 36 1 8.3681 6.0656 2.4782 37 1 9.1985 4.3343 6.6124 38 1 6.7913 2.7766 3.0171 39 1 6.4629 4.2302 1.9755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118810531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = 12.831746 kcal Electronic energy + Delta-G solvation = -19689.813604 eV Core-core repulsion = 16725.048508 eV Total energy + Delta-G solvation = -2964.765096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45852 -37.96593 -35.40336 -34.58124 -32.50077 -31.28528 -28.82593 -26.57975 -25.44711 -24.64650 -23.11548 -21.64271 -21.46755 -19.13620 -18.58352 -17.91555 -16.83621 -15.80502 -15.44602 -15.17496 -15.01615 -14.81109 -13.97196 -13.78609 -13.57151 -13.16562 -13.11576 -12.71035 -12.40440 -12.22322 -12.08152 -11.94876 -11.59425 -11.38425 -11.36890 -11.08333 -11.03414 -10.80671 -10.56716 -10.45383 -10.22021 -9.62297 -9.33074 -8.86941 -8.59945 -8.31715 -8.22155 -8.05375 -6.60537 -4.36561 1.12696 1.75587 2.17466 2.87801 3.19445 3.27887 3.40638 4.26952 4.59839 4.63181 4.76690 4.85013 4.87047 5.01584 5.21506 5.30369 5.37129 5.48847 5.52272 5.58221 5.60271 5.68903 5.75971 5.80714 5.86905 5.91380 5.94145 6.05352 6.16916 6.31896 6.42416 6.45279 6.60360 6.67290 6.89078 6.90929 7.64937 7.68777 8.14509 8.61196 8.73612 9.38104 10.73811 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.004596 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.272412 B = 6090.374550 C = 6743.473317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.047 4.047 4 C -0.187 4.187 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.154 4.154 8 C 0.086 3.914 9 N -0.470 5.470 10 C 0.022 3.978 11 C 0.204 3.796 12 O -0.553 6.553 13 C -0.611 4.611 14 H 0.066 0.934 15 C 0.034 3.966 16 N -0.897 5.897 17 Si 1.029 2.971 18 H -0.276 1.276 19 H -0.263 1.263 20 H -0.282 1.282 21 C -0.030 4.030 22 S 0.100 5.900 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.351 0.649 37 H 0.271 0.729 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 -9.161 -12.607 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.086 4.086 4 C -0.304 4.304 5 C -0.166 4.166 6 C -0.161 4.161 7 C -0.272 4.272 8 C -0.044 4.044 9 N -0.193 5.193 10 C -0.106 4.106 11 C 0.163 3.837 12 O -0.362 6.362 13 C -0.649 4.649 14 H 0.084 0.916 15 C -0.173 4.173 16 N -0.530 5.530 17 Si 0.858 3.142 18 H -0.203 1.203 19 H -0.188 1.188 20 H -0.208 1.208 21 C -0.159 4.159 22 S 0.365 5.635 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.564 -7.953 -11.680 19.587 hybrid contribution 0.934 -1.533 -0.710 1.931 sum -12.630 -9.487 -12.390 20.076 Atomic orbital electron populations 1.21785 0.95587 1.01724 1.01902 1.21550 0.95624 0.95997 1.02569 1.20147 0.87844 0.97533 1.03066 1.24449 0.99288 1.10610 0.96061 1.19991 0.92905 1.04824 0.98864 1.19987 0.95936 1.04338 0.95886 1.24345 0.98097 1.08349 0.96391 1.21161 0.89632 0.93823 0.99825 1.68723 1.04270 1.11275 1.35045 1.23988 0.93415 0.98092 0.95117 1.20388 0.89658 0.81501 0.92166 1.86434 1.71907 1.16594 1.61243 1.22405 1.34464 1.17213 0.90858 0.91589 1.25797 0.97685 0.98783 0.94987 1.70783 1.34859 1.33923 1.13476 0.84343 0.77169 0.76331 0.76401 1.20333 1.18832 1.20825 1.25113 1.00406 0.99063 0.91290 1.84408 0.96703 1.73013 1.09362 0.92676 0.92635 0.92611 0.91720 0.91788 0.90912 0.90283 0.84891 0.84561 0.89488 0.93397 0.90050 0.91123 0.79923 0.91868 0.91341 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 3 C -0.05 -0.46 5.71 -27.89 -0.16 -0.62 16 4 C -0.19 -2.38 5.76 -36.01 -0.21 -2.59 16 5 C -0.14 -1.72 10.05 -41.21 -0.41 -2.14 16 6 C -0.13 -1.86 10.05 -41.21 -0.41 -2.27 16 7 C -0.15 -2.44 5.57 -36.00 -0.20 -2.64 16 8 C 0.09 1.43 5.32 -4.97 -0.03 1.40 16 9 N -0.47 -9.44 6.25 -239.73 -1.50 -10.94 16 10 C 0.02 0.47 7.36 -2.77 -0.02 0.45 16 11 C 0.20 4.97 1.06 -90.84 -0.10 4.87 16 12 O -0.55 -13.78 13.42 -35.23 -0.47 -14.25 16 13 C -0.61 -16.90 9.04 -34.43 -0.31 -17.21 16 14 H 0.07 1.94 8.04 -52.49 -0.42 1.51 16 15 C 0.03 0.96 5.47 -17.82 -0.10 0.86 16 16 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 17 Si 1.03 23.89 24.79 -169.99 -4.21 19.67 16 18 H -0.28 -6.05 6.95 56.52 0.39 -5.66 16 19 H -0.26 -5.64 4.85 56.52 0.27 -5.37 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.03 -0.65 5.41 -2.77 -0.01 -0.67 16 22 S 0.10 1.50 23.06 -107.50 -2.48 -0.98 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 36 H 0.35 8.21 4.24 45.56 0.19 8.41 16 37 H 0.27 8.04 8.72 -40.82 -0.36 7.69 16 38 H 0.07 1.52 7.73 -51.93 -0.40 1.11 16 39 H 0.08 1.74 6.52 -51.93 -0.34 1.40 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -30.13 326.83 -10.44 -40.58 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.71 Total: 9.50 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.75 Total: -22.47 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.74 Total: -36.98 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.47 Total: -14.25 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -4.21 Total: 19.67 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.13 -10.44 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118810531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.408 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds