Wall clock time and date at job start Tue Mar 31 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47461 * 2 1 4 4 C 1.50694 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.33391 * 125.20581 * 89.99678 * 4 3 2 6 6 C 1.38427 * 114.92102 * 180.02562 * 5 4 3 7 7 C 1.33383 * 114.91996 * 0.02562 * 6 5 4 8 8 C 1.50706 * 125.20105 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.47340 * 89.99621 * 8 7 6 10 10 C 1.47949 * 110.99902 * 170.00158 * 9 8 7 11 11 C 1.53936 * 86.18061 * 222.41455 * 10 9 8 12 12 O 1.42890 * 113.73483 * 269.25475 * 11 10 9 13 13 C 1.50706 * 113.72978 * 138.07846 * 11 10 9 14 14 H 1.08001 * 120.00427 * 3.97315 * 13 11 10 15 15 C 1.37886 * 119.99589 * 183.97651 * 13 11 10 16 16 N 1.31513 * 119.99840 * 185.13516 * 15 13 11 17 17 Si 1.86794 * 119.99974 * 5.12882 * 15 13 11 18 18 H 1.48499 * 109.47494 * 270.00154 * 17 15 13 19 19 H 1.48502 * 109.47096 * 30.00527 * 17 15 13 20 20 H 1.48504 * 109.47236 * 150.00080 * 17 15 13 21 21 C 1.47951 * 110.99822 * 70.63960 * 9 8 7 22 22 S 1.75881 * 109.59594 * 0.23737 * 7 6 5 23 23 H 1.09003 * 109.46873 * 60.00080 * 1 2 3 24 24 H 1.08997 * 109.47279 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47316 * 300.00118 * 1 2 3 26 26 H 1.08997 * 109.47316 * 239.99882 * 2 1 3 27 27 H 1.09003 * 109.46873 * 119.99920 * 2 1 3 28 28 H 1.09004 * 109.47163 * 59.99312 * 3 2 1 29 29 H 1.09003 * 109.47012 * 299.99835 * 3 2 1 30 30 H 1.07996 * 122.53450 * 0.06572 * 5 4 3 31 31 H 1.07996 * 122.53325 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.46872 * 329.99274 * 8 7 6 33 33 H 1.09004 * 109.46813 * 209.99711 * 8 7 6 34 34 H 1.09002 * 113.76401 * 108.09725 * 10 9 8 35 35 H 1.09002 * 113.86317 * 336.74978 * 10 9 8 36 36 H 0.96708 * 113.99980 * 172.62784 * 12 11 10 37 37 H 0.96998 * 120.00034 * 354.95323 * 16 15 13 38 38 H 1.09000 * 113.76515 * 23.26452 * 21 9 8 39 39 H 1.09003 * 113.76159 * 251.89748 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3165 1.4423 -1.0890 6 6 5.6784 1.4418 -0.8412 7 6 6.0149 1.4410 0.4495 8 6 7.4257 1.4398 0.9795 9 7 7.8851 2.8245 1.1521 10 6 9.1668 2.8697 1.8898 11 6 8.5633 4.0581 2.6599 12 8 8.8367 5.3278 2.0642 13 6 8.8484 4.0297 4.1394 14 1 9.4821 3.2590 4.5527 15 6 8.3002 4.9879 4.9656 16 7 8.6286 5.0245 6.2386 17 14 7.0912 6.2341 4.2768 18 1 7.8313 7.4284 3.7959 19 1 6.3441 5.6265 3.1464 20 1 6.1369 6.6383 5.3404 21 6 7.1886 3.4771 2.2826 22 16 4.5603 1.4341 1.4382 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9078 1.4431 -2.0886 31 1 6.4128 1.4411 -1.6331 32 1 8.0784 0.9257 0.2740 33 1 7.4524 0.9256 1.9402 34 1 10.0218 3.1373 1.2689 35 1 9.3500 1.9920 2.5098 36 1 8.3681 6.0656 2.4782 37 1 9.1985 4.3343 6.6124 38 1 6.7913 2.7766 3.0171 39 1 6.4629 4.2302 1.9755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118810531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:36 Heat of formation + Delta-G solvation = -8.568668 kcal Electronic energy + Delta-G solvation = -19690.741595 eV Core-core repulsion = 16725.048508 eV Total energy + Delta-G solvation = -2965.693087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15812 -39.02616 -36.84106 -35.76336 -34.66315 -32.50119 -30.02772 -28.15149 -27.18489 -26.00197 -24.28441 -23.01164 -22.30257 -20.96168 -20.01488 -19.66009 -17.95710 -17.66805 -17.01504 -16.54041 -16.35677 -15.81571 -15.27017 -15.21922 -14.82987 -14.61558 -14.42554 -14.02623 -13.88016 -13.58536 -13.40474 -13.17320 -12.99932 -12.60737 -12.42175 -12.32039 -12.19304 -12.08905 -11.98967 -11.67969 -11.56821 -11.44069 -11.18412 -10.96194 -10.43821 -9.85833 -9.40485 -9.36056 -8.82922 -6.61943 0.05422 0.67515 1.10772 1.33077 1.43923 1.57123 1.83676 2.33399 2.83216 2.99242 3.55001 3.69752 3.80533 3.97121 4.05802 4.08949 4.18651 4.21901 4.33579 4.45636 4.55936 4.63496 4.71058 4.73906 4.81540 4.82813 4.86291 4.97644 5.08606 5.18411 5.20395 5.25457 5.35468 5.39800 5.44535 5.60264 5.66721 5.84415 6.05582 6.34766 6.79834 7.21935 8.48856 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.004596 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.272412 B = 6090.374550 C = 6743.473317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.047 4.047 4 C -0.171 4.171 5 C -0.142 4.142 6 C -0.120 4.120 7 C -0.183 4.183 8 C 0.089 3.911 9 N -0.466 5.466 10 C 0.027 3.973 11 C 0.187 3.813 12 O -0.558 6.558 13 C -0.618 4.618 14 H 0.032 0.968 15 C -0.013 4.013 16 N -0.928 5.928 17 Si 1.063 2.937 18 H -0.252 1.252 19 H -0.237 1.237 20 H -0.282 1.282 21 C -0.014 4.014 22 S 0.056 5.944 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.357 0.643 37 H 0.257 0.743 38 H 0.061 0.939 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 -9.109 -15.473 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.087 4.087 4 C -0.288 4.288 5 C -0.172 4.172 6 C -0.151 4.151 7 C -0.300 4.300 8 C -0.041 4.041 9 N -0.188 5.188 10 C -0.101 4.101 11 C 0.146 3.854 12 O -0.368 6.368 13 C -0.656 4.656 14 H 0.050 0.950 15 C -0.213 4.213 16 N -0.563 5.563 17 Si 0.884 3.116 18 H -0.177 1.177 19 H -0.162 1.162 20 H -0.209 1.209 21 C -0.143 4.143 22 S 0.320 5.680 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.117 0.883 30 H 0.180 0.820 31 H 0.169 0.831 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.207 0.793 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.471 -7.922 -14.561 22.674 hybrid contribution 1.547 -1.650 0.148 2.267 sum -13.924 -9.572 -14.413 22.209 Atomic orbital electron populations 1.21766 0.94285 1.02328 1.02368 1.21513 0.96709 0.94986 1.02178 1.20286 0.85899 0.98554 1.03936 1.24812 1.00422 1.08985 0.94622 1.20286 0.92254 1.04512 1.00154 1.20302 0.97102 1.02201 0.95533 1.24235 0.97396 1.11347 0.97056 1.21145 0.91031 0.91694 1.00223 1.68654 1.03096 1.13646 1.33448 1.23936 0.94377 0.96806 0.95016 1.20521 0.92125 0.82374 0.90415 1.86414 1.72392 1.16926 1.61056 1.22589 1.33506 1.16236 0.93276 0.94962 1.27222 0.98754 1.00827 0.94524 1.70908 1.36233 1.34313 1.14818 0.83959 0.75650 0.75259 0.76753 1.17718 1.16157 1.20851 1.24809 0.98795 0.98875 0.91837 1.84557 0.97925 1.73988 1.11527 0.91682 0.92019 0.92682 0.91353 0.92984 0.91031 0.88340 0.81978 0.83103 0.87356 0.94085 0.89203 0.90814 0.79297 0.93407 0.92097 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 3 C -0.05 -0.81 5.71 29.85 0.17 -0.64 16 4 C -0.17 -3.94 5.76 24.59 0.14 -3.80 16 5 C -0.14 -3.15 10.05 21.22 0.21 -2.94 16 6 C -0.12 -3.08 10.05 21.22 0.21 -2.86 16 7 C -0.18 -5.47 5.57 24.59 0.14 -5.33 16 8 C 0.09 2.84 5.32 85.56 0.45 3.29 16 9 N -0.47 -17.97 6.25 -915.58 -5.72 -23.69 16 10 C 0.03 1.13 7.36 86.41 0.64 1.77 16 11 C 0.19 8.99 1.06 -10.89 -0.01 8.98 16 12 O -0.56 -27.00 13.42 -148.98 -2.00 -29.00 16 13 C -0.62 -34.93 9.04 25.60 0.23 -34.70 16 14 H 0.03 1.98 8.04 -2.91 -0.02 1.95 16 15 C -0.01 -0.77 5.47 84.66 0.46 -0.30 16 16 N -0.93 -57.04 13.70 21.45 0.29 -56.75 16 17 Si 1.06 47.42 24.79 68.60 1.70 49.12 16 18 H -0.25 -10.23 6.95 99.48 0.69 -9.54 16 19 H -0.24 -9.54 4.85 99.48 0.48 -9.06 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.01 -0.59 5.41 86.41 0.47 -0.12 16 22 S 0.06 1.61 23.06 -56.49 -1.30 0.31 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 32 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.04 1.37 7.69 -2.38 -0.02 1.35 16 34 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.07 2.98 7.75 -2.39 -0.02 2.96 16 36 H 0.36 15.97 4.24 -74.05 -0.31 15.66 16 37 H 0.26 15.98 8.72 -92.71 -0.81 15.17 16 38 H 0.06 2.70 7.73 -2.39 -0.02 2.68 16 39 H 0.08 3.34 6.52 -2.39 -0.02 3.32 16 Total: -1.00 -65.33 326.83 -2.58 -67.91 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.44 Total: 31.38 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 4.01 Total: -39.28 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -5.43 Total: -80.44 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -2.00 Total: -29.00 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.70 Total: 49.12 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.30 Total: 0.31 kcal Total: -65.33 -2.58 -67.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118810531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.341 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds