Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.52995 * 109.47204 * 239.99509 * 2 1 3 5 5 C 1.50701 * 109.46966 * 60.00068 * 4 2 1 6 6 H 1.08005 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00383 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99732 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00243 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47138 * 60.00398 * 9 7 5 11 11 H 1.48504 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47246 * 300.00307 * 9 7 5 13 13 C 1.53008 * 109.47028 * 119.99894 * 2 1 3 14 14 O 1.45203 * 109.46780 * 300.00135 * 13 2 1 15 15 C 1.34703 * 116.99738 * 180.02562 * 14 13 2 16 16 O 1.21457 * 120.00006 * 359.97438 * 15 14 13 17 17 C 1.47887 * 120.00260 * 180.02562 * 15 14 13 18 18 N 1.32849 * 119.75105 * 359.97438 * 17 15 14 19 19 C 1.31412 * 121.65941 * 179.97438 * 18 17 15 20 20 C 1.38710 * 120.98715 * 0.02562 * 19 18 17 21 21 C 1.38434 * 119.40355 * 0.25448 * 20 19 18 22 22 C 1.38979 * 118.46698 * 359.50256 * 21 20 19 23 23 F 1.35104 * 120.50320 * 180.21801 * 22 21 20 24 24 H 1.09005 * 109.46700 * 300.00067 * 1 2 3 25 25 H 1.09000 * 109.46790 * 60.00164 * 1 2 3 26 26 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47085 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46834 * 300.00407 * 3 2 1 29 29 H 1.09005 * 109.47083 * 59.99529 * 3 2 1 30 30 H 1.09001 * 109.47166 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.47483 * 300.00587 * 4 2 1 32 32 H 0.97000 * 119.99697 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47161 * 179.97438 * 13 2 1 34 34 H 1.09000 * 109.46823 * 59.99924 * 13 2 1 35 35 H 1.07998 * 119.50432 * 180.02562 * 19 18 17 36 36 H 1.08002 * 120.29422 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.76664 * 179.72477 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8674 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2491 0.3992 -5.2571 10 1 1.7442 1.7992 -5.2567 11 1 1.7440 -0.3010 -6.4696 12 1 -0.2358 0.3994 -5.2576 13 6 2.0401 -0.7213 1.2493 14 8 1.5560 -0.0367 2.4348 15 6 1.9183 -0.5482 3.6271 16 8 2.6190 -1.5391 3.6752 17 6 1.4621 0.0960 4.8776 18 7 0.6954 1.1794 4.8194 19 6 0.2684 1.7815 5.9066 20 6 0.6048 1.3057 7.1654 21 6 1.4067 0.1826 7.2755 22 6 1.8406 -0.4384 6.1104 23 9 2.6211 -1.5396 6.1700 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7209 -1.2494 31 1 1.6767 -1.7490 -1.2492 32 1 2.8616 -1.8824 -4.7335 33 1 3.1300 -0.7217 1.2491 34 1 1.6767 -1.7489 1.2493 35 1 -0.3537 2.6599 5.8187 36 1 0.2480 1.8095 8.0516 37 1 1.6858 -0.2041 8.2446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122881622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -125.337061 kcal Electronic energy + Delta-G solvation = -21600.857192 eV Core-core repulsion = 18063.887471 eV Total energy + Delta-G solvation = -3536.969721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.19508 -41.85980 -40.72908 -38.76712 -36.96890 -34.43272 -33.76634 -32.32164 -29.35058 -28.17212 -27.98137 -26.29704 -25.00465 -24.50220 -22.52005 -20.03415 -19.41830 -18.83314 -18.37559 -18.18915 -17.77489 -17.64566 -16.85574 -16.51430 -16.28354 -15.38656 -15.24947 -15.02583 -14.76886 -14.56860 -14.24150 -14.08810 -13.98681 -13.88537 -13.47606 -12.97699 -12.77035 -12.66549 -12.32786 -12.29331 -12.06135 -11.95556 -11.90580 -11.41368 -11.10661 -11.07282 -10.94027 -10.76268 -10.52042 -10.25406 -8.15528 -6.23731 -0.79139 -0.05518 1.20087 1.35500 1.43445 1.45703 1.53128 2.44247 2.53247 2.77063 2.97615 3.18823 3.50504 3.56620 3.84489 3.87517 3.88610 4.18008 4.25038 4.43021 4.53272 4.55502 4.71772 4.76185 4.89140 5.00649 5.03906 5.11615 5.23846 5.40533 5.43193 5.44070 5.47424 5.52449 5.72188 5.86294 6.26038 6.36098 6.68055 6.89396 7.43839 8.97125 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.003436 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.730874 B = 8147.451837 C = 8693.814501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.118 4.118 4 C 0.042 3.958 5 C -0.517 4.517 6 H 0.072 0.928 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.084 3.916 14 O -0.322 6.322 15 C 0.506 3.494 16 O -0.526 6.526 17 C 0.028 3.972 18 N -0.438 5.438 19 C 0.086 3.914 20 C -0.078 4.078 21 C -0.110 4.110 22 C 0.096 3.904 23 F -0.125 7.125 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.063 0.937 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.210 0.790 36 H 0.209 0.791 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 9.082 26.268 28.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.175 4.175 4 C 0.004 3.996 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.011 3.989 14 O -0.237 6.237 15 C 0.350 3.650 16 O -0.415 6.415 17 C -0.107 4.107 18 N -0.149 5.149 19 C -0.075 4.075 20 C -0.097 4.097 21 C -0.136 4.136 22 C 0.073 3.927 23 F -0.103 7.103 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.226 0.774 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.299 8.915 25.239 27.498 hybrid contribution 0.755 -1.067 -0.669 1.469 sum -5.544 7.848 24.569 26.381 Atomic orbital electron populations 1.21630 0.93459 1.00826 1.01579 1.20635 0.97192 0.96574 0.90966 1.21626 0.99628 0.94660 1.01581 1.18973 0.94519 0.94323 0.91743 1.21503 1.30801 1.12257 0.90898 0.90967 1.25954 0.95516 0.95847 1.02709 1.70115 1.38592 1.24899 1.24313 0.85544 0.78997 0.78750 0.78046 1.19075 1.21454 1.19084 1.23284 0.98478 0.95601 0.81575 1.86633 1.68482 1.54623 1.13931 1.21299 0.77152 0.81501 0.85020 1.90877 1.36421 1.25937 1.88295 1.20001 1.03784 0.97685 0.89220 1.67725 1.06658 1.04949 1.35550 1.23852 0.97090 0.99749 0.86851 1.23044 0.92439 0.93161 1.01093 1.22205 0.97491 0.96267 0.97614 1.19075 0.93181 0.85705 0.94741 1.91591 1.71465 1.50214 1.97022 0.91853 0.92242 0.94323 0.94323 0.92243 0.91854 0.99146 0.99142 0.93024 0.92247 0.92251 0.77298 0.77369 0.78915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.08 71.98 0.58 -4.07 16 2 C -0.05 -2.30 0.61 -52.18 -0.03 -2.33 16 3 C -0.12 -4.66 8.08 71.98 0.58 -4.07 16 4 C 0.04 2.22 4.04 29.85 0.12 2.34 16 5 C -0.52 -28.71 7.65 25.60 0.20 -28.52 16 6 H 0.07 3.78 5.68 -2.91 -0.02 3.77 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.87 13.29 21.45 0.28 -57.58 16 9 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 3.45 4.33 71.98 0.31 3.76 16 14 O -0.32 -12.10 8.69 -56.13 -0.49 -12.58 16 15 C 0.51 18.33 7.94 70.38 0.56 18.88 16 16 O -0.53 -21.66 15.11 19.98 0.30 -21.36 16 17 C 0.03 0.77 6.75 41.87 0.28 1.05 16 18 N -0.44 -10.17 10.12 -184.83 -1.87 -12.04 16 19 C 0.09 0.96 11.18 84.87 0.95 1.91 16 20 C -0.08 -0.38 10.11 22.43 0.23 -0.16 16 21 C -0.11 -1.12 10.16 22.49 0.23 -0.89 16 22 C 0.10 2.13 7.32 22.77 0.17 2.30 16 23 F -0.12 -3.45 15.55 44.97 0.70 -2.75 16 24 H 0.06 2.23 7.68 -2.38 -0.02 2.21 16 25 H 0.06 2.41 6.62 -2.39 -0.02 2.39 16 26 H 0.04 1.52 8.14 -2.38 -0.02 1.51 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.41 6.62 -2.39 -0.02 2.39 16 29 H 0.06 2.23 7.68 -2.38 -0.02 2.21 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.21 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.21 -1.15 8.06 -2.91 -0.02 -1.18 16 37 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -76.44 320.92 6.67 -69.78 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.08 Total: -0.35 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.63 Total: -9.52 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.59 Total: -69.62 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.19 Total: -33.94 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.70 Total: -2.75 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -76.44 6.67 -69.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122881622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.560 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds