Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48497 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47190 * 300.00027 * 3 2 1 6 6 H 1.48495 * 109.47044 * 60.00326 * 3 2 1 7 7 C 1.38660 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00106 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99496 * 359.97438 * 7 2 1 10 10 C 1.35763 * 116.99942 * 185.05591 * 9 7 2 11 11 C 1.38885 * 120.06304 * 354.46554 * 10 9 7 12 12 C 1.38091 * 119.92545 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.07484 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93306 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.47302 * 89.99999 * 14 13 12 16 16 C 1.47953 * 111.00344 * 169.99823 * 15 14 13 17 17 C 1.53933 * 86.18351 * 222.41705 * 16 15 14 18 18 F 1.39900 * 113.73128 * 269.35981 * 17 16 15 19 19 C 1.52995 * 113.73573 * 138.08155 * 17 16 15 20 20 O 1.42901 * 109.47462 * 180.02562 * 19 17 16 21 21 C 1.47965 * 111.00312 * 70.63592 * 15 14 13 22 22 C 1.38304 * 120.13127 * 0.27497 * 13 12 11 23 23 C 1.38095 * 120.07179 * 359.48921 * 22 13 12 24 24 H 0.96998 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.03370 * 359.95351 * 11 10 9 26 26 H 1.08008 * 119.96309 * 179.97438 * 12 11 10 27 27 H 1.08998 * 109.47270 * 329.99905 * 14 13 12 28 28 H 1.09007 * 109.47230 * 209.99901 * 14 13 12 29 29 H 1.09004 * 113.76273 * 108.09856 * 16 15 14 30 30 H 1.09003 * 113.85934 * 336.74789 * 16 15 14 31 31 H 1.09002 * 109.46699 * 299.99940 * 19 17 16 32 32 H 1.08998 * 109.47705 * 59.99602 * 19 17 16 33 33 H 0.96697 * 114.00103 * 179.97438 * 20 19 17 34 34 H 1.09005 * 113.75390 * 23.26929 * 21 15 14 35 35 H 1.09001 * 113.75744 * 251.90580 * 21 15 14 36 36 H 1.08007 * 119.96037 * 179.73057 * 22 13 12 37 37 H 1.08005 * 120.03363 * 180.25679 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5047 0.1055 11 6 3.4572 -3.4396 0.0920 12 6 4.2023 -4.5971 0.2006 13 6 3.5687 -5.8203 0.3233 14 6 4.3849 -7.0815 0.4422 15 7 4.6573 -7.3568 1.8592 16 6 5.2463 -8.7027 2.0342 17 6 4.3082 -8.8429 3.2466 18 9 4.8759 -8.4123 4.4506 19 6 3.6446 -10.2170 3.3561 20 8 2.7975 -10.2467 4.5066 21 6 3.4271 -7.7820 2.5628 22 6 2.1874 -5.8889 0.3319 23 6 1.4366 -4.7345 0.2285 24 1 -0.4849 0.8401 0.0004 25 1 3.9526 -2.4847 -0.0036 26 1 5.2812 -4.5472 0.1898 27 1 5.3272 -6.9561 -0.0912 28 1 3.8310 -7.9149 0.0101 29 1 6.3041 -8.6884 2.2968 30 1 5.0193 -9.3924 1.2213 31 1 3.0496 -10.4054 2.4624 32 1 4.4124 -10.9850 3.4499 33 1 2.3428 -11.0898 4.6386 34 1 2.6668 -8.2011 1.9036 35 1 3.0313 -7.0319 3.2476 36 1 1.6954 -6.8460 0.4234 37 1 0.3579 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = -58.654317 kcal Electronic energy + Delta-G solvation = -21359.632692 eV Core-core repulsion = 17825.554552 eV Total energy + Delta-G solvation = -3534.078140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.68175 -39.93026 -38.81502 -37.00557 -36.37368 -32.47190 -31.56326 -30.18798 -28.89483 -26.64761 -26.12146 -25.10791 -22.58821 -21.98088 -20.33129 -20.02984 -17.99381 -17.82614 -17.01285 -16.46811 -16.40803 -15.74935 -14.91550 -14.74005 -14.53102 -14.47395 -14.08004 -13.78726 -13.59852 -13.55094 -13.24744 -12.93217 -12.72324 -12.37392 -12.32745 -11.72967 -11.44233 -11.35307 -10.99969 -10.86152 -10.70004 -10.55878 -10.48872 -10.40622 -10.33215 -9.32989 -8.94194 -8.80741 -8.18175 -7.19343 -6.45326 -4.03941 2.20752 2.26635 3.12638 3.14781 3.20268 3.45654 3.64113 3.97062 4.00091 4.24637 4.52051 4.64820 4.82635 4.87104 4.96468 5.06337 5.11161 5.18344 5.23672 5.32231 5.38215 5.63028 5.69202 5.75967 5.83627 6.02755 6.14875 6.25850 6.41943 6.68206 6.84225 6.90623 7.06688 7.20358 7.22924 7.39224 7.44172 7.81507 8.00039 9.00569 9.70215 10.72749 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.003254 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.585239 B = 8602.264926 C = 8707.743424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.185 4.185 14 C 0.080 3.920 15 N -0.466 5.466 16 C -0.014 4.014 17 C 0.092 3.908 18 F -0.175 7.175 19 C 0.065 3.935 20 O -0.561 6.561 21 C 0.000 4.000 22 C -0.067 4.067 23 C -0.193 4.193 24 H 0.269 0.731 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.382 0.618 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -19.583 2.597 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.254 4.254 12 C -0.068 4.068 13 C -0.186 4.186 14 C -0.047 4.047 15 N -0.188 5.188 16 C -0.143 4.143 17 C 0.073 3.927 18 F -0.155 7.155 19 C -0.014 4.014 20 O -0.366 6.366 21 C -0.129 4.129 22 C -0.086 4.086 23 C -0.212 4.212 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.998 -18.135 2.854 20.025 hybrid contribution -0.100 -0.342 -0.408 0.542 sum 7.899 -18.476 2.445 20.242 Atomic orbital electron populations 1.70051 1.05972 1.27581 1.46132 1.25301 0.95852 0.98862 0.96522 0.85639 0.79179 0.80326 0.78253 1.19058 1.20153 1.20099 1.21391 0.91864 0.80791 1.52718 0.88966 1.83976 1.34417 1.11497 1.78201 1.19395 0.90312 0.88031 0.92006 1.21167 0.93786 0.98941 1.11464 1.20568 0.98347 0.91559 0.96315 1.18980 0.93070 0.93708 1.12837 1.21343 0.99130 0.95414 0.88813 1.68773 1.14349 1.22881 1.12809 1.24619 1.01201 0.92655 0.95820 1.22347 0.94639 0.93572 0.82135 1.92877 1.85574 1.90839 1.46192 1.22667 0.93512 0.95840 0.89370 1.86574 1.63336 1.40281 1.46429 1.24549 0.93699 0.96924 0.97713 1.20445 0.92861 0.96540 0.98775 1.20155 0.99478 0.90325 1.11286 0.92060 0.85527 0.87466 0.90310 0.94067 0.87980 0.89691 0.91647 0.92360 0.77079 0.89668 0.87901 0.87647 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 8 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 9 O -0.18 -5.12 9.76 0.02 0.00 -5.12 16 10 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.18 -3.14 5.12 -104.58 -0.54 -3.68 16 14 C 0.08 1.05 4.97 -4.98 -0.02 1.03 16 15 N -0.47 -6.19 6.25 -239.71 -1.50 -7.69 16 16 C -0.01 -0.13 7.44 -2.77 -0.02 -0.15 16 17 C 0.09 1.04 1.99 -89.69 -0.18 0.86 16 18 F -0.17 -2.58 17.14 2.25 0.04 -2.54 16 19 C 0.07 0.53 6.76 37.16 0.25 0.78 16 20 O -0.56 -5.31 13.53 -35.23 -0.48 -5.78 16 21 C 0.00 0.00 6.40 -2.77 -0.02 -0.02 16 22 C -0.07 -1.18 8.97 -39.61 -0.36 -1.54 16 23 C -0.19 -4.09 9.99 -39.40 -0.39 -4.48 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 26 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 27 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.04 0.46 7.63 -51.92 -0.40 0.07 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.07 0.39 7.94 -51.93 -0.41 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.38 1.58 9.12 45.56 0.42 2.00 16 34 H 0.09 0.93 6.92 -51.93 -0.36 0.57 16 35 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.11 1.52 7.45 -52.48 -0.39 1.13 16 37 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -33.65 317.94 -7.28 -40.93 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.78 Total: 4.68 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.08 Total: -20.26 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.74 Total: -32.39 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.48 Total: -10.91 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.65 -7.28 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.725 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds