Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48497 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47190 * 300.00027 * 3 2 1 6 6 H 1.48495 * 109.47044 * 60.00326 * 3 2 1 7 7 C 1.38660 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00106 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99496 * 359.97438 * 7 2 1 10 10 C 1.35763 * 116.99942 * 185.05591 * 9 7 2 11 11 C 1.38885 * 120.06304 * 354.46554 * 10 9 7 12 12 C 1.38091 * 119.92545 * 179.97438 * 11 10 9 13 13 C 1.38305 * 120.07484 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.93306 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.47302 * 89.99999 * 14 13 12 16 16 C 1.47953 * 111.00344 * 169.99823 * 15 14 13 17 17 C 1.53933 * 86.18351 * 222.41705 * 16 15 14 18 18 F 1.39900 * 113.73128 * 269.35981 * 17 16 15 19 19 C 1.52995 * 113.73573 * 138.08155 * 17 16 15 20 20 O 1.42901 * 109.47462 * 180.02562 * 19 17 16 21 21 C 1.47965 * 111.00312 * 70.63592 * 15 14 13 22 22 C 1.38304 * 120.13127 * 0.27497 * 13 12 11 23 23 C 1.38095 * 120.07179 * 359.48921 * 22 13 12 24 24 H 0.96998 * 119.99629 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.03370 * 359.95351 * 11 10 9 26 26 H 1.08008 * 119.96309 * 179.97438 * 12 11 10 27 27 H 1.08998 * 109.47270 * 329.99905 * 14 13 12 28 28 H 1.09007 * 109.47230 * 209.99901 * 14 13 12 29 29 H 1.09004 * 113.76273 * 108.09856 * 16 15 14 30 30 H 1.09003 * 113.85934 * 336.74789 * 16 15 14 31 31 H 1.09002 * 109.46699 * 299.99940 * 19 17 16 32 32 H 1.08998 * 109.47705 * 59.99602 * 19 17 16 33 33 H 0.96697 * 114.00103 * 179.97438 * 20 19 17 34 34 H 1.09005 * 113.75390 * 23.26929 * 21 15 14 35 35 H 1.09001 * 113.75744 * 251.90580 * 21 15 14 36 36 H 1.08007 * 119.96037 * 179.73057 * 22 13 12 37 37 H 1.08005 * 120.03363 * 180.25679 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5047 0.1055 11 6 3.4572 -3.4396 0.0920 12 6 4.2023 -4.5971 0.2006 13 6 3.5687 -5.8203 0.3233 14 6 4.3849 -7.0815 0.4422 15 7 4.6573 -7.3568 1.8592 16 6 5.2463 -8.7027 2.0342 17 6 4.3082 -8.8429 3.2466 18 9 4.8759 -8.4123 4.4506 19 6 3.6446 -10.2170 3.3561 20 8 2.7975 -10.2467 4.5066 21 6 3.4271 -7.7820 2.5628 22 6 2.1874 -5.8889 0.3319 23 6 1.4366 -4.7345 0.2285 24 1 -0.4849 0.8401 0.0004 25 1 3.9526 -2.4847 -0.0036 26 1 5.2812 -4.5472 0.1898 27 1 5.3272 -6.9561 -0.0912 28 1 3.8310 -7.9149 0.0101 29 1 6.3041 -8.6884 2.2968 30 1 5.0193 -9.3924 1.2213 31 1 3.0496 -10.4054 2.4624 32 1 4.4124 -10.9850 3.4499 33 1 2.3428 -11.0898 4.6386 34 1 2.6668 -8.2011 1.9036 35 1 3.0313 -7.0319 3.2476 36 1 1.6954 -6.8460 0.4234 37 1 0.3579 -4.7883 0.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137115600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = -85.877201 kcal Electronic energy + Delta-G solvation = -21360.813165 eV Core-core repulsion = 17825.554552 eV Total energy + Delta-G solvation = -3535.258613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.64800 -41.09442 -40.34250 -38.25000 -37.44778 -34.38958 -32.87714 -31.80707 -30.02674 -27.78675 -27.34801 -26.64680 -23.73054 -23.60514 -21.78357 -20.87813 -19.84667 -18.85978 -18.45246 -17.34775 -17.29785 -16.81086 -16.46143 -16.20139 -15.94934 -15.55284 -15.34017 -15.19273 -15.03772 -14.77559 -14.42851 -14.32847 -14.04740 -13.60799 -13.47945 -13.22383 -13.00616 -12.65281 -12.51790 -12.25047 -12.12396 -11.96173 -11.66898 -11.42855 -11.18557 -10.96935 -10.80743 -9.82336 -9.77113 -8.92449 -8.49002 -6.17098 0.58767 0.65800 1.33694 1.41950 1.52126 2.16447 2.66850 2.78835 2.90454 3.15378 3.29405 3.50384 3.54503 3.88135 3.97271 4.04052 4.06944 4.17079 4.32505 4.37344 4.48480 4.50329 4.56613 4.62489 4.65134 4.74485 4.81162 5.06878 5.13142 5.18983 5.22409 5.33661 5.57672 5.70960 5.77516 5.97901 6.01846 6.21986 6.87413 6.95928 7.76567 8.74517 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.003254 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.585239 B = 8602.264926 C = 8707.743424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.054 4.054 13 C -0.158 4.158 14 C 0.082 3.918 15 N -0.498 5.498 16 C 0.002 3.998 17 C 0.079 3.921 18 F -0.203 7.203 19 C 0.067 3.933 20 O -0.592 6.592 21 C -0.007 4.007 22 C -0.058 4.058 23 C -0.205 4.205 24 H 0.273 0.727 25 H 0.115 0.885 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.403 0.597 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.149 0.851 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.021 -22.807 2.106 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.265 4.265 12 C -0.073 4.073 13 C -0.159 4.159 14 C -0.045 4.045 15 N -0.220 5.220 16 C -0.126 4.126 17 C 0.060 3.940 18 F -0.184 7.184 19 C -0.011 4.011 20 O -0.402 6.402 21 C -0.136 4.136 22 C -0.076 4.076 23 C -0.225 4.225 24 H 0.082 0.918 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.253 0.747 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.216 -21.437 2.367 23.865 hybrid contribution -0.664 0.270 -0.198 0.744 sum 9.552 -21.167 2.169 23.324 Atomic orbital electron populations 1.70188 1.07988 1.28750 1.48937 1.26592 0.96880 1.02713 0.95844 0.84528 0.78176 0.74833 0.78656 1.17623 1.19088 1.19328 1.21849 0.92464 0.81513 1.53198 0.88299 1.83937 1.35960 1.12609 1.81471 1.19961 0.91556 0.88050 0.94146 1.21253 0.93197 0.99994 1.12028 1.20929 0.99650 0.91129 0.95589 1.19590 0.93365 0.95068 1.07899 1.21421 0.99588 0.93916 0.89572 1.68698 1.14942 1.25908 1.12489 1.24679 1.00940 0.91095 0.95889 1.22694 0.94954 0.94793 0.81538 1.92817 1.86061 1.91352 1.48122 1.22747 0.94235 0.94069 0.90072 1.86515 1.63969 1.42337 1.47331 1.24591 0.94316 0.96771 0.97921 1.20895 0.93227 0.96877 0.96602 1.20458 0.99963 0.90610 1.11433 0.91802 0.86694 0.84789 0.88736 0.90685 0.87644 0.85731 0.88779 0.90243 0.74650 0.87320 0.91499 0.83349 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.43 13.67 21.62 0.30 -57.14 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.91 29.55 68.60 2.03 45.93 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.40 9.76 -22.83 -0.22 -14.62 16 10 C 0.11 5.79 6.65 22.58 0.15 5.94 16 11 C -0.25 -11.12 9.17 22.39 0.21 -10.92 16 12 C -0.05 -1.96 9.69 22.25 0.22 -1.74 16 13 C -0.16 -4.86 5.12 -19.83 -0.10 -4.97 16 14 C 0.08 1.72 4.97 85.56 0.43 2.14 16 15 N -0.50 -11.25 6.25 -912.29 -5.70 -16.95 16 16 C 0.00 0.03 7.44 86.41 0.64 0.68 16 17 C 0.08 1.53 1.99 -10.15 -0.02 1.51 16 18 F -0.20 -5.75 17.14 44.97 0.77 -4.98 16 19 C 0.07 0.80 6.76 71.98 0.49 1.29 16 20 O -0.59 -9.64 13.53 -148.98 -2.02 -11.65 16 21 C -0.01 -0.16 6.40 86.40 0.55 0.40 16 22 C -0.06 -1.88 8.97 22.25 0.20 -1.68 16 23 C -0.21 -8.82 9.99 22.39 0.22 -8.59 16 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 26 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 27 H 0.09 1.76 8.08 -2.39 -0.02 1.75 16 28 H 0.08 1.13 7.63 -2.38 -0.02 1.11 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.12 0.87 7.75 -2.39 -0.02 0.85 16 31 H 0.09 0.58 7.94 -2.39 -0.02 0.57 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.40 2.22 9.12 -74.06 -0.68 1.54 16 34 H 0.11 1.84 6.92 -2.38 -0.02 1.82 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.15 3.56 7.45 -2.91 -0.02 3.54 16 37 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -80.46 317.94 -0.33 -80.79 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.43 Total: 19.58 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 4.09 Total: -40.95 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -5.41 Total: -74.09 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -2.24 Total: -26.27 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.77 Total: -4.98 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -80.46 -0.33 -80.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.088 kcal (2) G-P(sol) polarization free energy of solvation -80.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds