Wall clock time and date at job start Tue Mar 31 2020 05:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47064 * 269.99195 * 3 2 1 5 5 H 1.48498 * 109.47538 * 29.99920 * 3 2 1 6 6 H 1.48508 * 109.47028 * 149.99898 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47576 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99758 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 27 27 H 0.96992 * 120.00518 * 359.97438 * 12 10 9 28 28 H 1.09002 * 109.47280 * 59.99618 * 13 12 10 29 29 H 1.09001 * 109.46702 * 299.99811 * 13 12 10 30 30 H 1.09002 * 109.47103 * 59.99596 * 14 13 12 31 31 H 1.08998 * 109.46862 * 300.00408 * 14 13 12 32 32 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 33 33 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 8 3.4226 -3.4231 0.0022 12 7 1.7808 -4.9153 0.0015 13 6 2.7328 -6.0289 0.0033 14 6 1.9679 -7.3538 0.0032 15 6 2.9620 -8.5168 0.0044 16 8 2.2475 -9.7543 0.0037 17 6 2.9875 -10.8941 0.0052 18 6 4.3734 -10.8225 0.0014 19 6 5.1248 -11.9816 0.0082 20 6 4.4977 -13.2139 0.0076 21 6 3.1150 -13.2891 0.0057 22 9 2.5041 -14.4941 0.0046 23 6 2.3588 -12.1300 0.0049 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 0.8273 -5.0925 0.0008 28 1 3.3582 -5.9709 0.8942 29 1 3.3608 -5.9714 -0.8858 30 1 1.3422 -7.4121 -0.8875 31 1 1.3401 -7.4110 0.8924 32 1 3.5880 -8.4588 0.8949 33 1 3.5894 -8.4594 -0.8851 34 1 4.8645 -9.8607 -0.0022 35 1 6.2032 -11.9253 0.0097 36 1 5.0871 -14.1189 0.0092 37 1 1.2804 -12.1882 0.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:12 Heat of formation + Delta-G solvation = -110.807017 kcal Electronic energy + Delta-G solvation = -20024.150774 eV Core-core repulsion = 16487.811123 eV Total energy + Delta-G solvation = -3536.339651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.29676 -40.49937 -38.75874 -37.74544 -35.14952 -32.93578 -32.15811 -31.05443 -30.06199 -28.90081 -26.01795 -23.68788 -23.29737 -22.43891 -21.56031 -19.63218 -18.94819 -16.99211 -16.73985 -16.65023 -16.43524 -16.34745 -15.94453 -15.76978 -15.27962 -14.98556 -14.57155 -14.29813 -14.16159 -13.74937 -13.15821 -12.72029 -12.66179 -12.46178 -12.31431 -12.05698 -11.75601 -11.75084 -11.29451 -11.18429 -10.92579 -10.78568 -10.60924 -9.97161 -9.31422 -9.28734 -8.71932 -8.71718 -8.56225 -8.42715 -6.07036 -4.06618 0.70153 0.86736 2.58247 3.16651 3.34104 3.39365 3.46235 3.67527 3.81079 3.99386 4.30282 4.47691 4.54476 4.58428 4.59977 4.69786 4.80847 4.93321 4.96363 5.16500 5.26042 5.31428 5.49997 5.55101 5.65497 5.78835 5.89802 5.91160 5.93096 6.29242 6.33306 6.91781 6.98758 7.16584 7.30983 7.94256 8.02180 8.40258 9.04172 9.18363 9.58482 11.05326 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.062951 B = 0.002078 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.684302 B =13474.365404 C =13887.998207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.515 3.485 11 O -0.546 6.546 12 N -0.749 5.749 13 C 0.124 3.876 14 C -0.130 4.130 15 C 0.062 3.938 16 O -0.309 6.309 17 C 0.165 3.835 18 C -0.220 4.220 19 C -0.049 4.049 20 C -0.196 4.196 21 C 0.138 3.862 22 F -0.135 7.135 23 C -0.193 4.193 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.398 0.602 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.417 -26.373 0.018 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.404 5.404 13 C -0.001 4.001 14 C -0.168 4.168 15 C -0.013 4.013 16 O -0.222 6.222 17 C 0.118 3.882 18 C -0.239 4.239 19 C -0.068 4.068 20 C -0.215 4.215 21 C 0.118 3.882 22 F -0.114 7.114 23 C -0.212 4.212 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.231 0.769 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.919 -26.073 0.023 26.736 hybrid contribution -0.041 0.566 -0.012 0.567 sum 5.878 -25.507 0.011 26.175 Atomic orbital electron populations 1.69961 1.06036 1.26927 1.51124 1.25021 0.94932 0.99525 0.95226 0.86417 0.79827 0.82601 0.78163 1.20610 1.21272 1.19683 1.21164 0.94254 0.89128 1.50145 0.90700 1.19244 0.94152 0.90515 0.99530 1.22041 0.91123 0.83315 0.73031 1.90537 1.18073 1.84656 1.48946 1.46272 1.09520 1.05821 1.78838 1.20965 0.92412 0.84523 1.02152 1.21716 0.98628 0.91863 1.04612 1.22802 0.95242 0.81023 1.02252 1.86062 1.35731 1.12624 1.87797 1.18617 0.89751 0.86222 0.93588 1.21423 0.92687 1.00411 1.09350 1.20819 1.00258 0.90819 0.94856 1.21061 0.92553 0.99605 1.08252 1.17293 0.90625 0.79949 1.00321 1.91521 1.83592 1.42596 1.93655 1.20271 1.01433 0.89020 1.10497 0.92895 0.93398 0.93397 0.76880 0.91881 0.91870 0.89981 0.89975 0.91210 0.91217 0.84476 0.84564 0.84617 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.68 8.92 -34.44 -0.31 -14.99 16 8 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 9 C 0.00 0.12 5.46 -29.04 -0.16 -0.04 16 10 C 0.51 11.44 7.82 -10.99 -0.09 11.36 16 11 O -0.55 -14.00 15.46 5.55 0.09 -13.92 16 12 N -0.75 -12.11 5.56 -60.29 -0.33 -12.45 16 13 C 0.12 1.61 5.67 -4.04 -0.02 1.58 16 14 C -0.13 -1.23 5.70 -26.74 -0.15 -1.38 16 15 C 0.06 0.52 4.74 37.16 0.18 0.70 16 16 O -0.31 -3.09 10.14 -19.42 -0.20 -3.28 16 17 C 0.16 1.55 6.68 -39.23 -0.26 1.29 16 18 C -0.22 -1.73 9.04 -39.42 -0.36 -2.09 16 19 C -0.05 -0.33 10.04 -39.61 -0.40 -0.73 16 20 C -0.20 -1.45 10.02 -39.49 -0.40 -1.85 16 21 C 0.14 1.23 7.30 -39.44 -0.29 0.94 16 22 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 23 C -0.19 -1.79 9.97 -39.37 -0.39 -2.18 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.40 5.37 8.47 -40.82 -0.35 5.02 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.07 0.52 7.65 -51.93 -0.40 0.12 16 34 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -33.25 327.56 -7.26 -40.51 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.77 Total: -0.06 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.74 Total: -5.95 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.40 Total: -38.01 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.11 Total: -17.20 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.25 -7.26 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.297 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds