Wall clock time and date at job start Tue Mar 31 2020 05:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47064 * 269.99195 * 3 2 1 5 5 H 1.48498 * 109.47538 * 29.99920 * 3 2 1 6 6 H 1.48508 * 109.47028 * 149.99898 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47576 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99758 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.47319 * 180.02562 * 15 14 13 17 17 C 1.35897 * 117.00481 * 180.02562 * 16 15 14 18 18 C 1.38774 * 120.03441 * 359.72088 * 17 16 15 19 19 C 1.38138 * 119.99122 * 179.74971 * 18 17 16 20 20 C 1.38257 * 120.07872 * 0.53010 * 19 18 17 21 21 C 1.38476 * 120.08328 * 359.74048 * 20 19 18 22 22 F 1.35105 * 119.99874 * 179.97438 * 21 20 19 23 23 C 1.38392 * 120.00736 * 359.97438 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 27 27 H 0.96992 * 120.00518 * 359.97438 * 12 10 9 28 28 H 1.09002 * 109.47280 * 59.99618 * 13 12 10 29 29 H 1.09001 * 109.46702 * 299.99811 * 13 12 10 30 30 H 1.09002 * 109.47103 * 59.99596 * 14 13 12 31 31 H 1.08998 * 109.46862 * 300.00408 * 14 13 12 32 32 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 33 33 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 34 34 H 1.07996 * 120.00577 * 0.02562 * 18 17 16 35 35 H 1.07993 * 119.96226 * 180.27412 * 19 18 17 36 36 H 1.07999 * 119.95967 * 179.77480 * 20 19 18 37 37 H 1.07997 * 120.03638 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 8 3.4226 -3.4231 0.0022 12 7 1.7808 -4.9153 0.0015 13 6 2.7328 -6.0289 0.0033 14 6 1.9679 -7.3538 0.0032 15 6 2.9620 -8.5168 0.0044 16 8 2.2475 -9.7543 0.0037 17 6 2.9875 -10.8941 0.0052 18 6 4.3734 -10.8225 0.0014 19 6 5.1248 -11.9816 0.0082 20 6 4.4977 -13.2139 0.0076 21 6 3.1150 -13.2891 0.0057 22 9 2.5041 -14.4941 0.0046 23 6 2.3588 -12.1300 0.0049 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8903 27 1 0.8273 -5.0925 0.0008 28 1 3.3582 -5.9709 0.8942 29 1 3.3608 -5.9714 -0.8858 30 1 1.3422 -7.4121 -0.8875 31 1 1.3401 -7.4110 0.8924 32 1 3.5880 -8.4588 0.8949 33 1 3.5894 -8.4594 -0.8851 34 1 4.8645 -9.8607 -0.0022 35 1 6.2032 -11.9253 0.0097 36 1 5.0871 -14.1189 0.0092 37 1 1.2804 -12.1882 0.0038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:11 Heat of formation + Delta-G solvation = -132.222512 kcal Electronic energy + Delta-G solvation = -20025.079419 eV Core-core repulsion = 16487.811123 eV Total energy + Delta-G solvation = -3537.268297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.98289 -41.15223 -40.41156 -38.42177 -36.42254 -35.08333 -33.26022 -31.78978 -30.99344 -30.50955 -27.19081 -25.32747 -24.03639 -23.32440 -22.39733 -21.24864 -19.61536 -18.52598 -17.71324 -17.58990 -17.47257 -17.23941 -16.97408 -16.69876 -16.67323 -16.23124 -16.18414 -15.33399 -15.06610 -14.72835 -14.50159 -14.17651 -13.78071 -13.58995 -13.22007 -13.13973 -13.01364 -12.76014 -12.61183 -12.50703 -12.41536 -12.03325 -11.93618 -11.63617 -11.44340 -10.62222 -10.55081 -9.98866 -9.93426 -9.34122 -8.24742 -6.31839 0.08715 0.26401 1.41200 1.41851 1.54421 1.84324 1.89305 2.38641 2.56645 2.60087 3.10696 3.33121 3.71771 3.88461 3.91000 3.96582 4.00010 4.10677 4.26706 4.39004 4.40832 4.43479 4.46103 4.67691 4.98356 5.03390 5.06785 5.07356 5.13076 5.21172 5.28056 5.33091 5.56663 5.69918 5.74784 6.06756 6.29876 6.71292 6.84926 7.34367 7.51858 8.87283 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.062951 B = 0.002078 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.684302 B =13474.365404 C =13887.998207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.006 3.994 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.727 5.727 13 C 0.124 3.876 14 C -0.117 4.117 15 C 0.062 3.938 16 O -0.324 6.324 17 C 0.147 3.853 18 C -0.222 4.222 19 C -0.046 4.046 20 C -0.194 4.194 21 C 0.120 3.880 22 F -0.143 7.143 23 C -0.207 4.207 24 H 0.267 0.733 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.413 0.587 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -26.980 -0.004 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.074 0.926 9 C -0.034 4.034 10 C 0.308 3.692 11 O -0.465 6.465 12 N -0.381 5.381 13 C 0.000 4.000 14 C -0.155 4.155 15 C -0.013 4.013 16 O -0.237 6.237 17 C 0.101 3.899 18 C -0.240 4.240 19 C -0.064 4.064 20 C -0.213 4.213 21 C 0.101 3.899 22 F -0.122 7.122 23 C -0.227 4.227 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.249 0.751 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.184 0.816 36 H 0.173 0.827 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.892 -26.734 -0.001 27.608 hybrid contribution -0.373 0.667 -0.004 0.764 sum 6.519 -26.067 -0.005 26.870 Atomic orbital electron populations 1.70034 1.07124 1.28067 1.51233 1.25813 0.95880 1.02818 0.94572 0.85443 0.78455 0.78562 0.78557 1.19685 1.19968 1.19863 1.21387 0.93715 0.91316 1.51064 0.92628 1.19092 0.94363 0.90983 0.98933 1.21419 0.89796 0.84685 0.73337 1.90514 1.19176 1.85575 1.51241 1.45958 1.11055 1.04808 1.76321 1.21121 0.92064 0.84729 1.02086 1.21535 0.98492 0.90299 1.05179 1.22807 0.94885 0.80202 1.03434 1.86010 1.36449 1.13078 1.88183 1.18765 0.90525 0.85904 0.94678 1.21690 0.92105 1.01648 1.08575 1.21196 1.01737 0.90024 0.93458 1.21368 0.91968 1.00872 1.07077 1.17511 0.91437 0.79583 1.01369 1.91496 1.83868 1.42978 1.93853 1.20370 1.01626 0.89494 1.11187 0.92423 0.93905 0.93914 0.75126 0.91980 0.91962 0.89452 0.89447 0.90075 0.90078 0.82940 0.81569 0.82693 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 13.29 21.45 0.28 -53.63 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -31.47 8.92 25.60 0.23 -31.24 16 8 H 0.06 3.42 6.75 -2.91 -0.02 3.40 16 9 C 0.01 0.29 5.46 29.10 0.16 0.45 16 10 C 0.52 23.09 7.82 87.66 0.69 23.78 16 11 O -0.59 -30.30 15.46 -3.05 -0.05 -30.35 16 12 N -0.73 -22.74 5.56 -463.06 -2.57 -25.31 16 13 C 0.12 3.00 5.67 86.38 0.49 3.49 16 14 C -0.12 -1.97 5.70 30.59 0.17 -1.80 16 15 C 0.06 0.91 4.74 71.98 0.34 1.25 16 16 O -0.32 -6.04 10.14 -92.39 -0.94 -6.97 16 17 C 0.15 2.61 6.68 22.50 0.15 2.76 16 18 C -0.22 -3.00 9.04 22.37 0.20 -2.80 16 19 C -0.05 -0.51 10.04 22.25 0.22 -0.28 16 20 C -0.19 -2.51 10.02 22.33 0.22 -2.29 16 21 C 0.12 2.08 7.30 22.36 0.16 2.25 16 22 F -0.14 -2.72 17.27 44.97 0.78 -1.94 16 23 C -0.21 -3.80 9.97 22.41 0.22 -3.58 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.41 10.53 8.47 -92.71 -0.79 9.75 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 33 H 0.08 1.02 7.65 -2.39 -0.02 1.00 16 34 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 35 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -71.63 327.56 3.56 -68.06 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.30 Total: 10.11 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 3.73 Total: -7.10 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.29 Total: -78.94 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.98 Total: -37.32 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.63 3.56 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.158 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds