Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 C 1.53006 * 109.47380 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47064 * 180.02562 * 4 3 2 6 6 C 1.36976 * 119.99586 * 284.75222 * 5 4 3 7 7 H 1.07995 * 120.00469 * 315.50130 * 6 5 4 8 8 C 1.38975 * 119.99624 * 135.49612 * 6 5 4 9 9 N 1.31419 * 119.99897 * 338.11334 * 8 6 5 10 10 Si 1.86797 * 120.00085 * 158.11121 * 8 6 5 11 11 H 1.48498 * 109.47016 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47509 * 119.99952 * 10 8 6 13 13 H 1.48496 * 109.47260 * 240.00342 * 10 8 6 14 14 C 1.34772 * 120.00163 * 104.75700 * 5 4 3 15 15 O 1.21664 * 120.00019 * 186.03547 * 14 5 4 16 16 C 1.47108 * 120.00005 * 6.04111 * 14 5 4 17 17 C 1.36095 * 123.47126 * 317.45798 * 16 14 5 18 18 S 1.70437 * 110.80936 * 180.25310 * 17 16 14 19 19 C 1.75501 * 92.45471 * 359.70134 * 18 17 16 20 20 C 1.50703 * 124.70535 * 180.02562 * 19 18 17 21 21 C 1.32768 * 110.58925 * 0.30178 * 19 18 17 22 22 C 1.50703 * 123.45161 * 179.75629 * 21 19 18 23 23 H 1.09005 * 109.47598 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 300.00112 * 1 2 3 25 25 H 1.09005 * 109.47325 * 60.00434 * 1 2 3 26 26 H 1.09000 * 109.47262 * 239.99360 * 2 1 3 27 27 H 1.08997 * 109.47028 * 119.99797 * 2 1 3 28 28 H 1.08997 * 109.46976 * 59.99676 * 3 2 1 29 29 H 1.08997 * 109.46867 * 299.99895 * 3 2 1 30 30 H 1.09004 * 109.46824 * 59.99458 * 4 3 2 31 31 H 1.09001 * 109.46576 * 299.99482 * 4 3 2 32 32 H 0.96998 * 119.99823 * 185.03944 * 9 8 6 33 33 H 1.08008 * 124.59183 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.46706 * 270.25338 * 20 19 18 35 35 H 1.08999 * 109.47005 * 30.25351 * 20 19 18 36 36 H 1.08996 * 109.46695 * 150.25625 * 20 19 18 37 37 H 1.09000 * 109.46870 * 270.02127 * 22 21 19 38 38 H 1.08992 * 109.46950 * 30.02174 * 22 21 19 39 39 H 1.08992 * 109.46569 * 150.02484 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.0013 3.5706 -1.1467 7 1 4.3036 3.1378 -2.0888 8 6 3.5543 4.8856 -1.0978 9 7 2.8002 5.2865 -0.0990 10 14 4.0254 6.0833 -2.4517 11 1 4.8746 5.3893 -3.4530 12 1 2.7965 6.5924 -3.1120 13 1 4.7801 7.2203 -1.8663 14 6 4.5637 3.3592 1.1287 15 8 4.8673 4.5370 1.1603 16 6 4.7485 2.5198 2.3226 17 6 3.8317 1.6086 2.7486 18 16 4.3702 0.8235 4.1623 19 6 5.8720 1.7313 4.1851 20 6 6.9527 1.5761 5.2239 21 6 5.9212 2.5781 3.1637 22 6 7.0816 3.5052 2.9084 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.9330 0.9286 -0.8909 31 1 3.9337 0.9285 0.8892 32 1 2.4279 6.1822 -0.1015 33 1 2.8887 1.4129 2.2598 34 1 6.7634 2.2612 6.0503 35 1 6.9556 0.5512 5.5948 36 1 7.9208 1.8038 4.7777 37 1 6.9115 4.4504 3.4239 38 1 7.9994 3.0491 3.2792 39 1 7.1728 3.6866 1.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147526077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -8.003647 kcal Electronic energy + Delta-G solvation = -20619.122542 eV Core-core repulsion = 17653.453955 eV Total energy + Delta-G solvation = -2965.668586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.04843 -36.80544 -35.35080 -33.33456 -32.33764 -31.19232 -29.02553 -28.15223 -25.74268 -24.57310 -23.42646 -22.13375 -20.51702 -19.53474 -18.09446 -16.66930 -16.42766 -15.40367 -15.06565 -14.78985 -14.18126 -13.99320 -13.74289 -13.63565 -12.93730 -12.84904 -12.62112 -12.37166 -12.17310 -12.12758 -11.76636 -11.64149 -11.35114 -11.19773 -11.13164 -10.87495 -10.79702 -10.70052 -10.51406 -10.41603 -10.40992 -10.12577 -9.88452 -8.74058 -8.18245 -8.01894 -7.68850 -7.07503 -6.10208 -3.81829 1.42453 2.03166 2.43619 2.81961 3.31685 3.41769 3.43503 4.31288 4.55275 4.88615 5.17398 5.27625 5.35828 5.40697 5.44570 5.52815 5.54966 5.62417 5.81400 5.87188 5.90519 5.98212 6.11579 6.12585 6.20176 6.22374 6.27231 6.35582 6.41049 6.46821 6.51898 6.58534 6.77839 6.87026 7.04159 7.15514 7.64791 8.30877 9.07089 9.20459 9.67053 10.32709 10.97858 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.007696 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.451990 B = 3637.300798 C = 5339.340838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.092 3.908 5 N -0.440 5.440 6 C -0.352 4.352 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.821 5.821 10 Si 0.908 3.092 11 H -0.271 1.271 12 H -0.286 1.286 13 H -0.281 1.281 14 C 0.523 3.477 15 O -0.528 6.528 16 C -0.105 4.105 17 C -0.235 4.235 18 S 0.114 5.886 19 C -0.215 4.215 20 C -0.074 4.074 21 C -0.061 4.061 22 C -0.086 4.086 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -10.676 6.777 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.165 4.165 4 C -0.033 4.033 5 N -0.161 5.161 6 C -0.478 4.478 7 H 0.097 0.903 8 C -0.134 4.134 9 N -0.454 5.454 10 Si 0.735 3.265 11 H -0.195 1.195 12 H -0.213 1.213 13 H -0.206 1.206 14 C 0.309 3.691 15 O -0.406 6.406 16 C -0.123 4.123 17 C -0.372 4.372 18 S 0.380 5.620 19 C -0.331 4.331 20 C -0.132 4.132 21 C -0.073 4.073 22 C -0.145 4.145 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.491 -11.012 7.815 13.585 hybrid contribution 0.306 1.700 -1.621 2.369 sum 1.797 -9.312 6.194 11.327 Atomic orbital electron populations 1.21749 0.96357 1.00662 1.01903 1.21528 0.95496 0.97841 1.01292 1.21904 0.96551 0.94786 1.03226 1.21832 0.93526 0.86883 1.01020 1.43140 1.53025 1.10285 1.09623 1.18957 1.47303 0.94746 0.86839 0.90298 1.25236 0.93547 0.98393 0.96266 1.69868 1.26345 1.18567 1.30614 0.86230 0.78301 0.81153 0.80826 1.19541 1.21280 1.20635 1.17301 0.82016 0.87142 0.82617 1.90638 1.52371 1.15250 1.82356 1.20799 0.94068 0.98333 0.99054 1.25725 1.05546 1.03821 1.02061 1.82523 1.12489 1.42006 1.24992 1.23909 1.01152 1.04952 1.03067 1.20247 0.95407 1.01750 0.95828 1.19759 0.96303 0.97608 0.93657 1.20416 0.93241 0.97293 1.03508 0.93435 0.92989 0.92745 0.92266 0.92742 0.92396 0.90738 0.92951 0.91093 0.92664 0.81133 0.91307 0.91867 0.90799 0.91036 0.92346 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.15 0.37 -1.58 16 2 C -0.12 -1.77 5.93 -26.74 -0.16 -1.93 16 3 C -0.13 -2.37 4.70 -26.73 -0.13 -2.49 16 4 C 0.09 1.87 4.92 -4.04 -0.02 1.85 16 5 N -0.44 -11.22 2.55 -116.13 -0.30 -11.52 16 6 C -0.35 -9.70 8.99 -14.98 -0.13 -9.83 16 7 H 0.08 2.11 7.92 -52.49 -0.42 1.69 16 8 C 0.08 2.18 4.26 -17.46 -0.07 2.11 16 9 N -0.82 -24.44 11.84 55.50 0.66 -23.78 16 10 Si 0.91 22.01 29.61 -169.99 -5.03 16.98 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.52 13.78 6.43 -12.66 -0.08 13.70 16 15 O -0.53 -15.88 13.67 5.22 0.07 -15.81 16 16 C -0.11 -2.29 5.30 -104.63 -0.55 -2.85 16 17 C -0.23 -4.38 8.31 29.96 0.25 -4.14 16 18 S 0.11 1.71 23.00 -107.50 -2.47 -0.77 16 19 C -0.21 -3.38 6.44 -36.18 -0.23 -3.62 16 20 C -0.07 -0.86 10.04 36.01 0.36 -0.50 16 21 C -0.06 -1.16 6.00 -104.06 -0.62 -1.78 16 22 C -0.09 -1.51 9.23 36.01 0.33 -1.18 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.18 6.98 -51.93 -0.36 0.82 16 29 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.34 4.39 -51.93 -0.23 1.11 16 32 H 0.26 7.50 8.32 -40.82 -0.34 7.17 16 33 H 0.17 3.13 4.87 -52.48 -0.26 2.87 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.81 6.64 -51.93 -0.34 0.47 16 39 H 0.07 1.49 7.35 -51.93 -0.38 1.11 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -32.44 326.88 -8.53 -40.97 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.69 Total: 1.23 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -0.69 Total: -12.24 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.36 Total: -35.30 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.07 Total: -15.81 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.47 Total: -0.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.44 -8.53 -40.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147526077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.969 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds