Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47394 * 2 1 4 4 C 1.53006 * 109.47380 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47064 * 180.02562 * 4 3 2 6 6 C 1.36976 * 119.99586 * 284.75222 * 5 4 3 7 7 H 1.07995 * 120.00469 * 315.50130 * 6 5 4 8 8 C 1.38975 * 119.99624 * 135.49612 * 6 5 4 9 9 N 1.31419 * 119.99897 * 338.11334 * 8 6 5 10 10 Si 1.86797 * 120.00085 * 158.11121 * 8 6 5 11 11 H 1.48498 * 109.47016 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47509 * 119.99952 * 10 8 6 13 13 H 1.48496 * 109.47260 * 240.00342 * 10 8 6 14 14 C 1.34772 * 120.00163 * 104.75700 * 5 4 3 15 15 O 1.21664 * 120.00019 * 186.03547 * 14 5 4 16 16 C 1.47108 * 120.00005 * 6.04111 * 14 5 4 17 17 C 1.36095 * 123.47126 * 317.45798 * 16 14 5 18 18 S 1.70437 * 110.80936 * 180.25310 * 17 16 14 19 19 C 1.75501 * 92.45471 * 359.70134 * 18 17 16 20 20 C 1.50703 * 124.70535 * 180.02562 * 19 18 17 21 21 C 1.32768 * 110.58925 * 0.30178 * 19 18 17 22 22 C 1.50703 * 123.45161 * 179.75629 * 21 19 18 23 23 H 1.09005 * 109.47598 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 300.00112 * 1 2 3 25 25 H 1.09005 * 109.47325 * 60.00434 * 1 2 3 26 26 H 1.09000 * 109.47262 * 239.99360 * 2 1 3 27 27 H 1.08997 * 109.47028 * 119.99797 * 2 1 3 28 28 H 1.08997 * 109.46976 * 59.99676 * 3 2 1 29 29 H 1.08997 * 109.46867 * 299.99895 * 3 2 1 30 30 H 1.09004 * 109.46824 * 59.99458 * 4 3 2 31 31 H 1.09001 * 109.46576 * 299.99482 * 4 3 2 32 32 H 0.96998 * 119.99823 * 185.03944 * 9 8 6 33 33 H 1.08008 * 124.59183 * 359.97438 * 17 16 14 34 34 H 1.09002 * 109.46706 * 270.25338 * 20 19 18 35 35 H 1.08999 * 109.47005 * 30.25351 * 20 19 18 36 36 H 1.08996 * 109.46695 * 150.25625 * 20 19 18 37 37 H 1.09000 * 109.46870 * 270.02127 * 22 21 19 38 38 H 1.08992 * 109.46950 * 30.02174 * 22 21 19 39 39 H 1.08992 * 109.46569 * 150.02484 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.0013 3.5706 -1.1467 7 1 4.3036 3.1378 -2.0888 8 6 3.5543 4.8856 -1.0978 9 7 2.8002 5.2865 -0.0990 10 14 4.0254 6.0833 -2.4517 11 1 4.8746 5.3893 -3.4530 12 1 2.7965 6.5924 -3.1120 13 1 4.7801 7.2203 -1.8663 14 6 4.5637 3.3592 1.1287 15 8 4.8673 4.5370 1.1603 16 6 4.7485 2.5198 2.3226 17 6 3.8317 1.6086 2.7486 18 16 4.3702 0.8235 4.1623 19 6 5.8720 1.7313 4.1851 20 6 6.9527 1.5761 5.2239 21 6 5.9212 2.5781 3.1637 22 6 7.0816 3.5052 2.9084 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9562 -0.8900 30 1 3.9330 0.9286 -0.8909 31 1 3.9337 0.9285 0.8892 32 1 2.4279 6.1822 -0.1015 33 1 2.8887 1.4129 2.2598 34 1 6.7634 2.2612 6.0503 35 1 6.9556 0.5512 5.5948 36 1 7.9208 1.8038 4.7777 37 1 6.9115 4.4504 3.4239 38 1 7.9994 3.0491 3.2792 39 1 7.1728 3.6866 1.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147526077.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = -26.846499 kcal Electronic energy + Delta-G solvation = -20619.939629 eV Core-core repulsion = 17653.453955 eV Total energy + Delta-G solvation = -2966.485674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79549 -38.34106 -37.05711 -35.10048 -33.97913 -32.84067 -30.29617 -29.67886 -27.48950 -26.08521 -25.00183 -23.70535 -21.90205 -21.29506 -19.53654 -18.45402 -18.02020 -17.16922 -16.78012 -16.46292 -15.79905 -15.53164 -15.21150 -15.04066 -14.49228 -14.24360 -14.02568 -13.64309 -13.59057 -13.46936 -13.42217 -13.10512 -12.85579 -12.78727 -12.72064 -12.57520 -12.48026 -12.23045 -12.02544 -12.00010 -11.75100 -11.68493 -11.39315 -10.82807 -10.10174 -9.42250 -9.16669 -9.03056 -8.23137 -5.98564 0.00476 0.74401 1.04071 1.28400 1.36122 1.42433 1.49892 2.31664 2.67633 3.12654 3.24262 3.86205 4.05252 4.07304 4.18401 4.29111 4.38985 4.40646 4.45946 4.61066 4.66042 4.69434 4.73056 4.88003 4.88536 4.96984 5.00567 5.04186 5.10216 5.11921 5.14036 5.34285 5.42120 5.42496 5.46818 5.59987 5.67738 6.19643 7.00389 7.19271 7.64530 8.32912 8.85586 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.007696 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.451990 B = 3637.300798 C = 5339.340838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.113 4.113 4 C 0.091 3.909 5 N -0.456 5.456 6 C -0.368 4.368 7 H 0.081 0.919 8 C 0.029 3.971 9 N -0.861 5.861 10 Si 0.968 3.032 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.295 1.295 14 C 0.515 3.485 15 O -0.582 6.582 16 C -0.145 4.145 17 C -0.245 4.245 18 S 0.212 5.788 19 C -0.201 4.201 20 C -0.077 4.077 21 C -0.100 4.100 22 C -0.077 4.077 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.259 0.741 33 H 0.169 0.831 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -13.687 8.500 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.032 4.032 5 N -0.176 5.176 6 C -0.495 4.495 7 H 0.098 0.902 8 C -0.179 4.179 9 N -0.496 5.496 10 Si 0.792 3.208 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.222 1.222 14 C 0.302 3.698 15 O -0.465 6.465 16 C -0.163 4.163 17 C -0.382 4.382 18 S 0.479 5.521 19 C -0.317 4.317 20 C -0.135 4.135 21 C -0.111 4.111 22 C -0.136 4.136 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.186 0.814 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.939 -14.079 9.519 17.106 hybrid contribution 0.178 2.477 -2.019 3.200 sum 2.117 -11.602 7.501 13.977 Atomic orbital electron populations 1.21741 0.95208 1.02276 1.01320 1.21476 0.96448 0.94440 1.02860 1.21745 0.95318 0.97557 1.00536 1.22030 0.94505 0.84458 1.02228 1.43406 1.53256 1.11873 1.09097 1.19230 1.46977 0.95520 0.87797 0.90181 1.26052 0.93355 1.00002 0.98470 1.69983 1.28178 1.18511 1.32901 0.85305 0.78424 0.78480 0.78545 1.17997 1.19697 1.22208 1.18030 0.80623 0.87100 0.83998 1.90571 1.54395 1.17745 1.83742 1.20583 0.96875 0.99919 0.98917 1.25858 1.04930 1.03335 1.04086 1.82164 1.10320 1.38890 1.20689 1.24515 1.02369 1.02723 1.02135 1.20465 0.94297 1.03837 0.94931 1.19803 0.96216 0.99961 0.95132 1.20321 0.95001 0.97294 1.00993 0.90633 0.93436 0.93611 0.90990 0.90767 0.94625 0.93899 0.92107 0.89259 0.93211 0.81364 0.89788 0.89229 0.89609 0.92149 0.88457 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.08 5.93 30.59 0.18 -2.90 16 3 C -0.11 -4.32 4.70 30.60 0.14 -4.17 16 4 C 0.09 3.76 4.92 86.38 0.43 4.18 16 5 N -0.46 -24.31 2.55 -639.57 -1.63 -25.93 16 6 C -0.37 -21.22 8.99 84.07 0.76 -20.46 16 7 H 0.08 4.44 7.92 -2.91 -0.02 4.42 16 8 C 0.03 1.69 4.26 84.93 0.36 2.05 16 9 N -0.86 -54.13 11.84 21.67 0.26 -53.88 16 10 Si 0.97 47.06 29.61 68.60 2.03 49.09 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 14 C 0.51 28.48 6.43 86.57 0.56 29.04 16 15 O -0.58 -37.34 13.67 -4.23 -0.06 -37.39 16 16 C -0.15 -6.41 5.30 -19.87 -0.11 -6.52 16 17 C -0.24 -8.88 8.31 67.32 0.56 -8.32 16 18 S 0.21 5.53 23.00 -56.49 -1.30 4.23 16 19 C -0.20 -5.67 6.44 24.51 0.16 -5.52 16 20 C -0.08 -1.42 10.04 71.24 0.72 -0.71 16 21 C -0.10 -3.73 6.00 -19.46 -0.12 -3.85 16 22 C -0.08 -2.76 9.23 71.24 0.66 -2.11 16 23 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.50 6.98 -2.39 -0.02 1.48 16 29 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 3.33 4.39 -2.39 -0.01 3.32 16 32 H 0.26 15.62 8.32 -92.71 -0.77 14.85 16 33 H 0.17 6.07 4.87 -2.91 -0.01 6.05 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.44 6.66 -2.39 -0.02 1.42 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 2.56 6.64 -2.39 -0.02 2.54 16 39 H 0.04 1.55 7.35 -2.39 -0.02 1.53 16 Total: -1.00 -76.49 326.88 5.35 -71.14 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.04 Total: 14.89 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 5.01 Total: -22.16 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.37 Total: -79.81 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.06 Total: -37.39 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.30 Total: 4.23 kcal Total: -76.49 5.35 -71.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147526077.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.296 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds