Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47497 * 2 1 4 4 C 1.52996 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.36975 * 119.99595 * 274.36068 * 5 4 3 7 7 H 1.08007 * 119.99440 * 124.67839 * 6 5 4 8 8 C 1.38968 * 120.00576 * 304.67620 * 6 5 4 9 9 N 1.31416 * 120.00163 * 183.21593 * 8 6 5 10 10 Si 1.86800 * 119.99368 * 3.21806 * 8 6 5 11 11 H 1.48499 * 109.47093 * 94.48143 * 10 8 6 12 12 H 1.48505 * 109.46840 * 214.47801 * 10 8 6 13 13 H 1.48492 * 109.47357 * 334.47756 * 10 8 6 14 14 C 1.34773 * 120.00418 * 94.36816 * 5 4 3 15 15 O 1.21669 * 119.99952 * 1.87838 * 14 5 4 16 16 C 1.47110 * 120.00400 * 181.88812 * 14 5 4 17 17 C 1.36099 * 123.47605 * 171.21331 * 16 14 5 18 18 S 1.70445 * 110.80696 * 180.28613 * 17 16 14 19 19 C 1.75503 * 92.45334 * 359.72009 * 18 17 16 20 20 C 1.50705 * 124.70064 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.46921 * 270.02084 * 20 19 18 22 22 C 1.32755 * 110.59344 * 359.97438 * 19 18 17 23 23 H 1.09001 * 109.46596 * 59.99889 * 1 2 3 24 24 H 1.08990 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46961 * 300.00578 * 1 2 3 26 26 H 1.09001 * 109.47296 * 239.99711 * 2 1 3 27 27 H 1.09002 * 109.46813 * 119.99604 * 2 1 3 28 28 H 1.09001 * 109.47084 * 59.99581 * 3 2 1 29 29 H 1.09006 * 109.46732 * 300.00147 * 3 2 1 30 30 H 1.08990 * 109.47260 * 59.99428 * 4 3 2 31 31 H 1.09002 * 109.46840 * 299.99432 * 4 3 2 32 32 H 0.97003 * 119.99403 * 180.02562 * 9 8 6 33 33 H 1.07991 * 124.59101 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.47174 * 30.02680 * 20 19 18 35 35 H 1.09000 * 109.46805 * 150.02257 * 20 19 18 36 36 H 1.08996 * 109.47241 * 300.00040 * 21 20 19 37 37 H 1.09000 * 109.47240 * 60.00439 * 21 20 19 38 38 H 1.09007 * 109.47016 * 180.02562 * 21 20 19 39 39 H 1.08010 * 123.45620 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2012 3.5000 -1.1825 7 1 3.7071 4.4500 -1.3242 8 6 4.9816 2.9641 -2.1999 9 7 5.1700 3.6418 -3.3099 10 14 5.7626 1.2803 -1.9894 11 1 4.8806 0.2471 -2.5891 12 1 7.0831 1.2588 -2.6686 13 1 5.9452 0.9966 -0.5433 14 6 4.3674 3.4287 1.1639 15 8 4.2733 2.8168 2.2114 16 6 4.8181 4.8290 1.1681 17 6 4.9823 5.5614 2.3034 18 16 5.5059 7.1409 1.9345 19 6 5.5157 6.8160 0.2099 20 6 5.9006 7.8164 -0.8495 21 6 4.6581 8.5888 -1.2970 22 6 5.1369 5.5668 -0.0321 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8907 31 1 3.9337 0.9285 0.8892 32 1 5.7145 3.2675 -4.0201 33 1 4.8002 5.1933 3.3022 34 1 6.6342 8.5123 -0.4426 35 1 6.3307 7.2935 -1.7038 36 1 3.9246 7.8928 -1.7039 37 1 4.2280 9.1117 -0.4427 38 1 4.9364 9.3121 -2.0636 39 1 5.0693 5.1468 -1.0249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147710855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -10.022487 kcal Electronic energy + Delta-G solvation = -20342.635940 eV Core-core repulsion = 17376.879810 eV Total energy + Delta-G solvation = -2965.756130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23484 -36.60396 -35.58052 -34.09976 -33.07079 -31.99733 -28.82186 -27.98073 -25.07718 -24.72448 -23.21115 -21.89528 -20.73209 -19.47158 -18.58069 -17.29381 -16.74546 -15.74086 -15.04800 -14.70152 -14.30684 -14.14761 -13.96100 -13.65480 -13.24827 -13.12712 -12.77498 -12.48509 -12.31380 -12.08194 -11.80286 -11.60151 -11.50112 -11.29251 -11.22756 -11.02524 -10.76000 -10.68927 -10.68531 -10.38295 -10.20980 -10.01955 -9.67495 -9.03712 -8.74158 -8.06948 -7.74941 -7.55884 -6.52136 -4.33964 1.53092 2.21954 2.58286 2.94717 3.04605 3.19443 3.24545 4.06700 4.33897 4.46485 4.81998 5.21823 5.32421 5.37380 5.46790 5.49195 5.70120 5.74452 5.76325 5.91613 6.08549 6.12716 6.13078 6.16982 6.20236 6.24858 6.35454 6.38344 6.42081 6.47016 6.54823 6.73528 6.85687 6.90067 7.10327 7.41857 7.50112 8.00768 8.11127 8.87238 9.22824 9.61629 10.52253 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.006476 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.526710 B = 4322.926730 C = 5114.896443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.127 4.127 4 C 0.106 3.894 5 N -0.464 5.464 6 C -0.344 4.344 7 H 0.111 0.889 8 C 0.070 3.930 9 N -0.865 5.865 10 Si 0.884 3.116 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.260 1.260 14 C 0.551 3.449 15 O -0.595 6.595 16 C -0.118 4.118 17 C -0.204 4.204 18 S 0.101 5.899 19 C -0.216 4.216 20 C -0.044 4.044 21 C -0.145 4.145 22 C -0.098 4.098 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.277 0.723 33 H 0.162 0.838 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.731 3.335 2.986 4.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.165 4.165 4 C -0.016 4.016 5 N -0.184 5.184 6 C -0.472 4.472 7 H 0.128 0.872 8 C -0.138 4.138 9 N -0.500 5.500 10 Si 0.712 3.288 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.184 1.184 14 C 0.340 3.660 15 O -0.480 6.480 16 C -0.136 4.136 17 C -0.342 4.342 18 S 0.366 5.634 19 C -0.331 4.331 20 C -0.084 4.084 21 C -0.203 4.203 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.351 4.289 4.155 6.123 hybrid contribution 0.015 -2.204 -0.881 2.374 sum -1.336 2.085 3.274 4.105 Atomic orbital electron populations 1.21741 0.96161 1.00892 1.01752 1.21490 0.95588 0.97480 1.01625 1.21874 0.96123 0.95951 1.02565 1.21640 0.93667 0.85726 1.00613 1.43461 1.57462 1.11549 1.05943 1.19072 1.30776 1.06713 0.90636 0.87226 1.25496 0.94755 0.98325 0.95269 1.69632 1.36992 1.37618 1.05740 0.86756 0.78745 0.83835 0.79475 1.19893 1.21565 1.18395 1.17848 0.78508 0.85912 0.83760 1.90633 1.58397 1.66694 1.32305 1.20322 1.05342 0.95691 0.92228 1.25277 1.07679 0.98486 1.02750 1.82473 1.67071 1.10957 1.02865 1.24434 1.12887 0.99987 0.95799 1.19974 0.97597 0.95147 0.95677 1.21769 0.98072 0.99878 1.00590 1.23324 0.94825 0.91345 1.02980 0.92766 0.93271 0.92931 0.92271 0.92263 0.92136 0.91147 0.92674 0.91091 0.91224 0.82043 0.91903 0.89785 0.91872 0.93130 0.92734 0.77056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.38 5.52 -26.73 -0.15 -2.53 16 4 C 0.11 2.32 3.93 -4.04 -0.02 2.30 16 5 N -0.46 -11.12 2.03 -116.14 -0.24 -11.35 16 6 C -0.34 -8.48 6.47 -14.98 -0.10 -8.58 16 7 H 0.11 2.83 6.28 -52.48 -0.33 2.50 16 8 C 0.07 1.74 5.30 -17.46 -0.09 1.65 16 9 N -0.87 -22.16 13.96 55.50 0.77 -21.39 16 10 Si 0.88 20.21 24.84 -169.99 -4.22 15.98 16 11 H -0.27 -6.01 7.10 56.52 0.40 -5.61 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.26 -6.11 6.45 56.52 0.36 -5.75 16 14 C 0.55 13.50 7.61 -12.66 -0.10 13.41 16 15 O -0.59 -15.47 16.25 5.22 0.08 -15.39 16 16 C -0.12 -2.63 5.91 -104.62 -0.62 -3.25 16 17 C -0.20 -3.95 10.53 29.96 0.32 -3.63 16 18 S 0.10 1.64 23.00 -107.50 -2.47 -0.83 16 19 C -0.22 -3.88 5.69 -36.18 -0.21 -4.09 16 20 C -0.04 -0.67 6.40 -27.88 -0.18 -0.85 16 21 C -0.15 -2.00 9.89 37.15 0.37 -1.63 16 22 C -0.10 -2.07 8.46 -39.02 -0.33 -2.40 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.21 3.64 -51.93 -0.19 1.02 16 31 H 0.07 1.57 7.27 -51.93 -0.38 1.20 16 32 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.16 2.97 8.03 -52.49 -0.42 2.55 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.21 4.98 4.20 -52.48 -0.22 4.76 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -27.04 327.74 -7.81 -34.85 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.78 Total: 6.42 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.89 Total: -13.24 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.54 Total: -32.74 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.22 Total: 15.98 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.83 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.04 -7.81 -34.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147710855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.825 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds