Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47497 * 2 1 4 4 C 1.52996 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.36975 * 119.99595 * 274.36068 * 5 4 3 7 7 H 1.08007 * 119.99440 * 124.67839 * 6 5 4 8 8 C 1.38968 * 120.00576 * 304.67620 * 6 5 4 9 9 N 1.31416 * 120.00163 * 183.21593 * 8 6 5 10 10 Si 1.86800 * 119.99368 * 3.21806 * 8 6 5 11 11 H 1.48499 * 109.47093 * 94.48143 * 10 8 6 12 12 H 1.48505 * 109.46840 * 214.47801 * 10 8 6 13 13 H 1.48492 * 109.47357 * 334.47756 * 10 8 6 14 14 C 1.34773 * 120.00418 * 94.36816 * 5 4 3 15 15 O 1.21669 * 119.99952 * 1.87838 * 14 5 4 16 16 C 1.47110 * 120.00400 * 181.88812 * 14 5 4 17 17 C 1.36099 * 123.47605 * 171.21331 * 16 14 5 18 18 S 1.70445 * 110.80696 * 180.28613 * 17 16 14 19 19 C 1.75503 * 92.45334 * 359.72009 * 18 17 16 20 20 C 1.50705 * 124.70064 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.46921 * 270.02084 * 20 19 18 22 22 C 1.32755 * 110.59344 * 359.97438 * 19 18 17 23 23 H 1.09001 * 109.46596 * 59.99889 * 1 2 3 24 24 H 1.08990 * 109.47279 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46961 * 300.00578 * 1 2 3 26 26 H 1.09001 * 109.47296 * 239.99711 * 2 1 3 27 27 H 1.09002 * 109.46813 * 119.99604 * 2 1 3 28 28 H 1.09001 * 109.47084 * 59.99581 * 3 2 1 29 29 H 1.09006 * 109.46732 * 300.00147 * 3 2 1 30 30 H 1.08990 * 109.47260 * 59.99428 * 4 3 2 31 31 H 1.09002 * 109.46840 * 299.99432 * 4 3 2 32 32 H 0.97003 * 119.99403 * 180.02562 * 9 8 6 33 33 H 1.07991 * 124.59101 * 359.97438 * 17 16 14 34 34 H 1.08999 * 109.47174 * 30.02680 * 20 19 18 35 35 H 1.09000 * 109.46805 * 150.02257 * 20 19 18 36 36 H 1.08996 * 109.47241 * 300.00040 * 21 20 19 37 37 H 1.09000 * 109.47240 * 60.00439 * 21 20 19 38 38 H 1.09007 * 109.47016 * 180.02562 * 21 20 19 39 39 H 1.08010 * 123.45620 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2012 3.5000 -1.1825 7 1 3.7071 4.4500 -1.3242 8 6 4.9816 2.9641 -2.1999 9 7 5.1700 3.6418 -3.3099 10 14 5.7626 1.2803 -1.9894 11 1 4.8806 0.2471 -2.5891 12 1 7.0831 1.2588 -2.6686 13 1 5.9452 0.9966 -0.5433 14 6 4.3674 3.4287 1.1639 15 8 4.2733 2.8168 2.2114 16 6 4.8181 4.8290 1.1681 17 6 4.9823 5.5614 2.3034 18 16 5.5059 7.1409 1.9345 19 6 5.5157 6.8160 0.2099 20 6 5.9006 7.8164 -0.8495 21 6 4.6581 8.5888 -1.2970 22 6 5.1369 5.5668 -0.0321 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8907 31 1 3.9337 0.9285 0.8892 32 1 5.7145 3.2675 -4.0201 33 1 4.8002 5.1933 3.3022 34 1 6.6342 8.5123 -0.4426 35 1 6.3307 7.2935 -1.7038 36 1 3.9246 7.8928 -1.7039 37 1 4.2280 9.1117 -0.4427 38 1 4.9364 9.3121 -2.0636 39 1 5.0693 5.1468 -1.0249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147710855.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -23.489081 kcal Electronic energy + Delta-G solvation = -20343.219895 eV Core-core repulsion = 17376.879810 eV Total energy + Delta-G solvation = -2966.340085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04489 -38.14897 -37.35513 -35.64689 -34.40657 -33.87047 -30.32251 -29.41991 -26.99194 -26.24045 -24.55550 -23.39997 -22.14761 -21.12973 -20.31815 -19.03513 -18.33610 -17.48416 -16.73008 -16.22781 -16.00072 -15.87721 -15.46562 -14.96347 -14.71478 -14.66161 -14.37526 -13.98693 -13.87286 -13.49521 -13.35632 -13.23842 -13.12730 -12.89168 -12.68433 -12.29512 -12.17377 -12.14707 -12.06762 -11.85188 -11.74063 -11.58751 -11.34646 -10.87946 -10.63295 -9.66479 -9.44172 -9.10378 -8.45987 -6.28771 -0.04040 0.78324 1.07177 1.18962 1.24832 1.35571 1.37988 2.17236 2.52702 2.70213 2.89826 3.85356 3.90441 4.02940 4.18878 4.23984 4.30957 4.31785 4.42117 4.53289 4.55664 4.74053 4.76959 4.84614 4.89775 4.91832 5.04590 5.05121 5.18220 5.22187 5.28652 5.33792 5.42096 5.43282 5.57487 5.61767 5.81201 6.05773 6.19013 6.93569 7.31572 7.71980 8.60821 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.006476 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.526710 B = 4322.926730 C = 5114.896443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.117 4.117 4 C 0.100 3.900 5 N -0.472 5.472 6 C -0.331 4.331 7 H 0.091 0.909 8 C 0.040 3.960 9 N -0.890 5.890 10 Si 0.922 3.078 11 H -0.256 1.256 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.539 3.461 15 O -0.620 6.620 16 C -0.158 4.158 17 C -0.212 4.212 18 S 0.209 5.791 19 C -0.215 4.215 20 C -0.046 4.046 21 C -0.141 4.141 22 C -0.127 4.127 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.281 0.719 33 H 0.169 0.831 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 4.372 3.640 5.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.022 4.022 5 N -0.191 5.191 6 C -0.459 4.459 7 H 0.108 0.892 8 C -0.165 4.165 9 N -0.526 5.526 10 Si 0.749 3.251 11 H -0.181 1.181 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.330 3.670 15 O -0.508 6.508 16 C -0.176 4.176 17 C -0.351 4.351 18 S 0.475 5.525 19 C -0.331 4.331 20 C -0.086 4.086 21 C -0.199 4.199 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.186 0.814 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.263 5.325 4.790 7.272 hybrid contribution 0.021 -2.366 -0.988 2.564 sum -1.242 2.958 3.802 4.975 Atomic orbital electron populations 1.21712 0.94112 1.02463 1.01860 1.21489 0.97369 0.94804 1.02213 1.21786 0.93914 0.98381 1.01492 1.21772 0.95672 0.84614 1.00131 1.43604 1.57589 1.12256 1.05686 1.18842 1.30246 1.06101 0.90733 0.89189 1.25855 0.95145 1.00337 0.95168 1.69681 1.37977 1.38604 1.06338 0.86164 0.78528 0.81913 0.78473 1.18082 1.21399 1.19897 1.18334 0.78131 0.87081 0.83479 1.90584 1.59751 1.67609 1.32877 1.20279 1.08438 0.95171 0.93733 1.25591 1.06559 1.00556 1.02372 1.82046 1.63894 1.07025 0.99488 1.24850 1.10368 0.99391 0.98499 1.20110 0.98887 0.94958 0.94620 1.21738 0.96798 0.99664 1.01703 1.22879 0.98000 0.92935 1.01588 0.92710 0.90954 0.92839 0.91719 0.91650 0.93222 0.92087 0.92683 0.91824 0.90917 0.81387 0.88905 0.91039 0.94289 0.91932 0.90301 0.79962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.12 -4.47 5.52 30.59 0.17 -4.30 16 4 C 0.10 4.47 3.93 86.38 0.34 4.81 16 5 N -0.47 -23.41 2.03 -639.58 -1.30 -24.71 16 6 C -0.33 -16.98 6.47 84.06 0.54 -16.44 16 7 H 0.09 4.93 6.28 -2.91 -0.02 4.92 16 8 C 0.04 2.07 5.30 84.93 0.45 2.52 16 9 N -0.89 -46.69 13.96 21.67 0.30 -46.39 16 10 Si 0.92 41.96 24.84 68.60 1.70 43.66 16 11 H -0.26 -10.84 7.10 99.48 0.71 -10.14 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.27 -13.01 6.45 99.48 0.64 -12.37 16 14 C 0.54 27.36 7.61 86.57 0.66 28.02 16 15 O -0.62 -33.21 16.25 -4.25 -0.07 -33.28 16 16 C -0.16 -7.17 5.91 -19.87 -0.12 -7.29 16 17 C -0.21 -8.02 10.53 67.32 0.71 -7.31 16 18 S 0.21 6.16 23.00 -56.49 -1.30 4.86 16 19 C -0.21 -7.47 5.69 24.51 0.14 -7.33 16 20 C -0.05 -1.31 6.40 29.85 0.19 -1.12 16 21 C -0.14 -3.60 9.89 71.98 0.71 -2.89 16 22 C -0.13 -5.50 8.46 22.68 0.19 -5.31 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.06 2.43 3.64 -2.39 -0.01 2.42 16 31 H 0.06 2.90 7.27 -2.39 -0.02 2.88 16 32 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.17 6.03 8.03 -2.92 -0.02 6.00 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.18 9.02 4.20 -2.91 -0.01 9.01 16 Total: -1.00 -59.83 327.74 5.19 -54.64 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.97 Total: 24.10 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 4.88 Total: -22.88 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -1.00 Total: -71.10 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.07 Total: -33.28 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.70 Total: 43.66 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.30 Total: 4.86 kcal Total: -59.83 5.19 -54.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147710855.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.150 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds