Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47490 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99410 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00335 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47525 * 120.00107 * 20 18 16 23 23 H 1.48498 * 109.47048 * 240.00518 * 20 18 16 24 24 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 25 25 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 26 26 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 27 27 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 28 28 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 29 29 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 30 30 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 31 31 H 0.96998 * 120.00197 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47110 * 299.99966 * 14 13 11 33 33 H 1.09001 * 109.46718 * 60.00645 * 14 13 11 34 34 H 1.09002 * 109.47093 * 300.00603 * 15 14 13 35 35 H 1.09002 * 109.46952 * 59.99977 * 15 14 13 36 36 H 0.96997 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.3608 -4.5407 3.0483 15 6 -0.3777 -5.8806 3.0481 16 6 -0.6207 -6.3206 4.4689 17 1 -0.2826 -5.7057 5.2898 18 6 -1.2756 -7.5074 4.7206 19 7 -1.6878 -8.2559 3.7208 20 14 -1.5774 -8.0524 6.4816 21 1 -1.0195 -7.0412 7.4152 22 1 -3.0376 -8.1891 6.7142 23 1 -0.9143 -9.3603 6.7155 24 1 -0.3632 0.0003 1.0278 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 4.3371 2.6891 0.8845 28 1 4.5361 -2.6225 -0.8818 29 1 0.5237 -2.4007 -0.5137 30 1 2.0827 -3.2597 -0.5134 31 1 0.2925 -4.6648 0.9298 32 1 1.3156 -4.6517 3.5622 33 1 -0.2437 -3.7932 3.5621 34 1 -1.3326 -5.7691 2.5343 35 1 0.2263 -6.6283 2.5341 36 1 -2.1489 -9.0907 3.8979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154131860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = -75.269835 kcal Electronic energy + Delta-G solvation = -21335.075002 eV Core-core repulsion = 17820.196321 eV Total energy + Delta-G solvation = -3514.878682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69164 -39.33854 -38.36699 -37.28700 -34.98734 -34.35899 -32.99713 -32.77524 -30.10835 -29.26768 -27.40120 -24.80452 -23.48895 -22.94456 -21.05163 -20.21056 -19.53333 -18.82604 -18.26540 -17.01459 -16.40535 -16.00634 -15.70257 -15.48565 -15.14343 -14.50508 -14.30648 -14.10560 -13.87763 -13.40701 -13.19914 -12.91042 -12.70787 -12.63505 -12.33689 -12.01148 -11.83529 -11.24461 -11.08672 -11.07834 -10.65825 -10.58796 -10.38602 -9.92305 -9.65107 -9.49960 -9.35755 -9.11889 -8.60620 -8.40982 -6.13404 -4.16154 0.45628 0.69732 2.62387 2.89127 3.06655 3.25847 3.33622 3.38284 3.43010 3.69777 4.00347 4.35433 4.39296 4.50257 4.68052 4.95908 5.06831 5.16845 5.24000 5.24590 5.39705 5.56242 5.58813 5.94506 6.28172 6.29761 6.51001 6.68570 6.83673 7.07332 7.15578 7.46831 7.56604 7.73222 7.84771 7.92420 8.23304 8.56258 8.90056 9.49089 10.98202 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.003043 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.574072 B = 9199.721580 C = 9312.791109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.222 3.778 3 N -0.530 5.530 4 C 0.516 3.484 5 O -0.458 6.458 6 N -0.553 5.553 7 C 0.398 3.602 8 O -0.465 6.465 9 C -0.189 4.189 10 C -0.093 4.093 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.720 5.720 14 C 0.122 3.878 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.413 0.587 28 H 0.407 0.593 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.398 0.602 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 14.253 -12.951 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.077 3.923 3 N -0.257 5.257 4 C 0.211 3.789 5 O -0.261 6.261 6 N -0.289 5.289 7 C 0.210 3.790 8 O -0.272 6.272 9 C -0.195 4.195 10 C -0.134 4.134 11 C 0.295 3.705 12 O -0.422 6.422 13 N -0.370 5.370 14 C 0.000 4.000 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.272 0.728 28 H 0.266 0.734 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.232 0.768 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.949 15.465 -12.287 20.939 hybrid contribution -0.373 -1.445 0.638 1.623 sum 6.575 14.020 -11.649 19.378 Atomic orbital electron populations 1.20926 0.87000 1.04307 1.04698 1.21266 0.97513 0.85850 0.87635 1.67841 1.08868 1.31071 1.17933 1.19782 0.83689 0.84526 0.90857 1.84691 1.76165 1.30770 1.34522 1.67366 1.43871 0.98635 1.19019 1.18848 0.86205 0.84610 0.89306 1.84820 1.73779 1.34732 1.33894 1.20988 0.93933 0.97230 1.07377 1.20498 1.02150 0.93880 0.96862 1.20217 0.78374 0.81698 0.90241 1.90701 1.51024 1.54329 1.46153 1.46297 1.58044 1.21782 1.10911 1.21736 1.00167 0.98637 0.79490 1.19327 0.95324 0.89611 0.98208 1.21089 1.37389 1.05670 0.91886 0.92225 1.24990 0.95418 0.96452 0.97412 1.69956 1.39177 1.13423 1.30740 0.86461 0.77926 0.78626 0.84598 1.19582 1.20909 1.20914 0.88663 0.89434 0.89489 0.72761 0.73380 0.87150 0.87455 0.76820 0.92566 0.92562 0.95906 0.95911 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.83 36.01 0.35 -0.64 16 2 C 0.22 2.67 6.82 -82.33 -0.56 2.11 16 3 N -0.53 -7.03 10.40 -11.01 -0.11 -7.14 16 4 C 0.52 6.89 8.71 -91.28 -0.80 6.09 16 5 O -0.46 -4.95 13.64 -18.07 -0.25 -5.20 16 6 N -0.55 -7.79 10.49 -14.79 -0.16 -7.94 16 7 C 0.40 5.17 7.81 -16.71 -0.13 5.04 16 8 O -0.47 -5.17 12.74 -18.23 -0.23 -5.40 16 9 C -0.19 -2.28 4.42 -104.20 -0.46 -2.74 16 10 C -0.09 -0.94 5.28 -29.03 -0.15 -1.09 16 11 C 0.51 7.85 7.82 -10.98 -0.09 7.77 16 12 O -0.54 -10.88 16.03 5.56 0.09 -10.79 16 13 N -0.72 -11.44 5.56 -60.29 -0.33 -11.77 16 14 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.57 6.06 -51.93 -0.31 0.26 16 27 H 0.41 2.40 9.06 45.56 0.41 2.81 16 28 H 0.41 2.00 9.06 45.56 0.41 2.42 16 29 H 0.11 0.77 6.07 -51.92 -0.32 0.46 16 30 H 0.11 0.81 7.63 -51.93 -0.40 0.42 16 31 H 0.40 5.19 8.47 -40.82 -0.35 4.85 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -37.11 320.21 -5.49 -42.60 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.62 Total: 3.45 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -2.41 Total: 6.17 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.13 Total: -51.74 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.39 Total: -21.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.11 -5.49 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154131860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.671 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds