Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47490 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99410 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00335 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46984 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47525 * 120.00107 * 20 18 16 23 23 H 1.48498 * 109.47048 * 240.00518 * 20 18 16 24 24 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 25 25 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 26 26 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 27 27 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 28 28 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 29 29 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 30 30 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 31 31 H 0.96998 * 120.00197 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47110 * 299.99966 * 14 13 11 33 33 H 1.09001 * 109.46718 * 60.00645 * 14 13 11 34 34 H 1.09002 * 109.47093 * 300.00603 * 15 14 13 35 35 H 1.09002 * 109.46952 * 59.99977 * 15 14 13 36 36 H 0.96997 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.3608 -4.5407 3.0483 15 6 -0.3777 -5.8806 3.0481 16 6 -0.6207 -6.3206 4.4689 17 1 -0.2826 -5.7057 5.2898 18 6 -1.2756 -7.5074 4.7206 19 7 -1.6878 -8.2559 3.7208 20 14 -1.5774 -8.0524 6.4816 21 1 -1.0195 -7.0412 7.4152 22 1 -3.0376 -8.1891 6.7142 23 1 -0.9143 -9.3603 6.7155 24 1 -0.3632 0.0003 1.0278 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 4.3371 2.6891 0.8845 28 1 4.5361 -2.6225 -0.8818 29 1 0.5237 -2.4007 -0.5137 30 1 2.0827 -3.2597 -0.5134 31 1 0.2925 -4.6648 0.9298 32 1 1.3156 -4.6517 3.5622 33 1 -0.2437 -3.7932 3.5621 34 1 -1.3326 -5.7691 2.5343 35 1 0.2263 -6.6283 2.5341 36 1 -2.1489 -9.0907 3.8979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154131860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = -111.848823 kcal Electronic energy + Delta-G solvation = -21336.661186 eV Core-core repulsion = 17820.196321 eV Total energy + Delta-G solvation = -3516.464866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.59589 -40.58705 -39.25524 -38.13484 -36.58783 -35.28716 -34.79717 -33.82207 -31.68738 -30.25428 -28.45128 -26.54837 -24.51875 -23.88242 -22.80657 -21.47232 -20.39561 -19.71446 -19.12112 -18.59864 -18.00812 -16.97885 -16.91116 -16.53435 -16.47895 -16.31040 -15.38293 -15.07804 -14.99121 -14.59344 -14.42355 -14.28143 -13.75370 -13.55215 -13.44412 -13.19192 -13.00459 -12.84311 -12.59943 -12.52419 -12.20398 -11.97182 -11.64714 -11.50217 -11.43626 -10.97613 -10.59557 -10.43523 -10.16356 -9.97730 -8.23589 -6.33142 -0.44718 -0.19210 1.40762 1.42618 1.54818 1.69986 1.77885 2.16301 2.37426 2.50372 2.61962 3.11479 3.18443 3.47961 3.69995 3.88297 4.04322 4.20908 4.41149 4.51313 4.55607 4.57544 4.71909 4.84138 4.86068 4.89156 5.25902 5.33295 5.52372 5.62143 5.65598 5.81321 6.18613 6.42719 6.46805 6.68466 6.80449 6.81658 7.34505 7.36207 8.88162 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.003043 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.574072 B = 9199.721580 C = 9312.791109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 N -0.546 5.546 4 C 0.509 3.491 5 O -0.463 6.463 6 N -0.578 5.578 7 C 0.390 3.610 8 O -0.476 6.476 9 C -0.198 4.198 10 C -0.080 4.080 11 C 0.510 3.490 12 O -0.593 6.593 13 N -0.713 5.713 14 C 0.141 3.859 15 C 0.023 3.977 16 C -0.547 4.547 17 H 0.055 0.945 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.961 3.039 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.431 0.569 28 H 0.430 0.570 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.415 0.585 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.010 0.990 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 14.089 -13.734 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 N -0.274 5.274 4 C 0.204 3.796 5 O -0.269 6.269 6 N -0.316 5.316 7 C 0.204 3.796 8 O -0.287 6.287 9 C -0.204 4.204 10 C -0.120 4.120 11 C 0.298 3.702 12 O -0.474 6.474 13 N -0.365 5.365 14 C 0.017 3.983 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.073 0.927 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.203 1.203 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.294 0.706 28 H 0.295 0.705 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.500 15.291 -13.112 21.166 hybrid contribution -0.181 -1.365 0.858 1.622 sum 6.319 13.927 -12.254 19.597 Atomic orbital electron populations 1.21052 0.84911 1.06328 1.04556 1.21838 0.98920 0.85651 0.86581 1.67921 1.08856 1.31843 1.18829 1.20006 0.84025 0.84968 0.90588 1.84643 1.75963 1.30042 1.36276 1.67397 1.44562 0.99287 1.20337 1.19119 0.86912 0.84735 0.88859 1.84768 1.73665 1.34050 1.36224 1.21150 0.93649 0.98011 1.07590 1.20550 1.04639 0.93591 0.93226 1.21078 0.76626 0.80411 0.92072 1.90690 1.52770 1.55592 1.48332 1.46064 1.58393 1.22556 1.09437 1.21169 0.98452 0.96574 0.82076 1.19129 0.94909 0.90922 0.96441 1.21507 1.37566 1.06064 0.93395 0.92689 1.25805 0.95135 0.96528 1.01493 1.70042 1.39763 1.13879 1.32703 0.85458 0.78041 0.78204 0.79718 1.19238 1.20140 1.20308 0.89615 0.88275 0.86731 0.70603 0.70550 0.83191 0.84184 0.74880 0.94295 0.93668 0.96819 0.97170 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.83 71.24 0.70 -1.02 16 2 C 0.21 4.82 6.82 42.45 0.29 5.11 16 3 N -0.55 -14.10 10.40 -301.71 -3.14 -17.23 16 4 C 0.51 13.39 8.71 180.58 1.57 14.97 16 5 O -0.46 -9.86 13.64 -87.58 -1.19 -11.05 16 6 N -0.58 -16.05 10.49 -426.36 -4.47 -20.52 16 7 C 0.39 9.69 7.81 84.84 0.66 10.35 16 8 O -0.48 -9.82 12.74 -88.14 -1.12 -10.94 16 9 C -0.20 -4.38 4.42 -19.59 -0.09 -4.47 16 10 C -0.08 -1.35 5.28 29.10 0.15 -1.20 16 11 C 0.51 14.81 7.82 87.66 0.69 15.49 16 12 O -0.59 -23.43 16.03 -3.03 -0.05 -23.48 16 13 N -0.71 -21.58 5.56 -463.06 -2.57 -24.15 16 14 C 0.14 5.78 5.61 86.38 0.48 6.27 16 15 C 0.02 1.13 5.09 29.85 0.15 1.28 16 16 C -0.55 -29.94 9.11 25.60 0.23 -29.71 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.51 5.46 84.65 0.46 0.98 16 19 N -0.92 -52.80 13.29 21.45 0.28 -52.52 16 20 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 1.06 6.06 -2.39 -0.01 1.05 16 27 H 0.43 4.89 9.06 -74.06 -0.67 4.22 16 28 H 0.43 3.34 9.06 -74.06 -0.67 2.67 16 29 H 0.15 1.37 6.07 -2.38 -0.01 1.35 16 30 H 0.14 1.52 7.63 -2.39 -0.02 1.50 16 31 H 0.41 9.86 8.47 -92.71 -0.79 9.07 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -80.78 320.21 -5.89 -86.67 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -0.96 Total: 10.15 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.31 Total: 18.05 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -9.90 Total: -114.42 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.37 Total: -45.47 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -80.78 -5.89 -86.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154131860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.183 kcal (2) G-P(sol) polarization free energy of solvation -80.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds