Wall clock time and date at job start Tue Mar 31 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38433 * 120.44216 * 2 1 4 4 N 1.48006 * 120.74341 * 0.03118 * 3 2 1 5 5 O 1.21799 * 119.99986 * 186.83734 * 4 3 2 6 6 O 1.21801 * 119.99900 * 6.84681 * 4 3 2 7 7 C 1.38776 * 118.51595 * 180.24882 * 3 2 1 8 8 C 1.38136 * 119.32179 * 359.76301 * 7 3 2 9 9 N 1.31979 * 120.83992 * 0.02562 * 8 7 3 10 10 O 1.41596 * 119.19833 * 179.97438 * 9 8 7 11 11 C 1.32511 * 121.60983 * 359.97438 * 9 8 7 12 12 N 1.39262 * 119.70029 * 180.02562 * 11 9 8 13 13 C 1.46899 * 111.00389 * 7.86887 * 12 11 9 14 14 C 1.52994 * 109.47013 * 172.27365 * 13 12 11 15 15 C 1.53000 * 109.46946 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47390 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99778 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00009 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99831 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00184 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47360 * 89.99999 * 20 18 16 22 22 H 1.48504 * 109.47127 * 210.00428 * 20 18 16 23 23 H 1.48499 * 109.47113 * 329.99716 * 20 18 16 24 24 H 1.09003 * 109.46795 * 277.16531 * 1 2 3 25 25 H 1.08999 * 109.47449 * 37.15662 * 1 2 3 26 26 H 1.08995 * 109.47203 * 157.16535 * 1 2 3 27 27 H 1.08002 * 120.33882 * 179.74701 * 7 3 2 28 28 H 1.08001 * 119.58424 * 179.97438 * 8 7 3 29 29 H 1.00900 * 110.99583 * 243.91194 * 12 11 9 30 30 H 1.09002 * 109.46903 * 52.26823 * 13 12 11 31 31 H 1.08997 * 109.46766 * 292.27194 * 13 12 11 32 32 H 1.08995 * 109.47479 * 300.00008 * 14 13 12 33 33 H 1.09003 * 109.47088 * 60.00359 * 14 13 12 34 34 H 1.09004 * 109.47389 * 300.00439 * 15 14 13 35 35 H 1.09002 * 109.47150 * 59.99969 * 15 14 13 36 36 H 0.97005 * 120.00352 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1935 0.0000 4 7 1.4950 2.4903 0.0007 5 8 2.1191 3.5287 -0.1249 6 8 0.2839 2.5191 0.1270 7 6 3.5954 1.1468 -0.0053 8 6 4.2310 -0.0796 -0.0054 9 7 3.5362 -1.2017 -0.0010 10 8 4.2235 -2.4397 -0.0018 11 6 2.2111 -1.1981 0.0041 12 7 1.5179 -2.4059 0.0091 13 6 2.4347 -3.5385 0.1955 14 6 1.6260 -4.8228 0.3883 15 6 2.5809 -6.0025 0.5818 16 6 1.7844 -7.2678 0.7710 17 1 0.7051 -7.2340 0.7545 18 6 2.4337 -8.4685 0.9653 19 7 1.7386 -9.5727 1.1299 20 14 4.3005 -8.5271 0.9932 21 1 4.7814 -8.3264 2.3837 22 1 4.7618 -9.8481 0.4957 23 1 4.8425 -7.4535 0.1221 24 1 -0.3633 0.1282 1.0197 25 1 -0.3634 0.8190 -0.6207 26 1 -0.3633 -0.9471 -0.3988 27 1 4.1719 2.0601 -0.0096 28 1 5.3102 -0.1208 -0.0099 29 1 0.9754 -2.5149 -0.8346 30 1 3.0541 -3.3635 1.0752 31 1 3.0717 -3.6386 -0.6833 32 1 0.9889 -4.7227 1.2670 33 1 1.0067 -4.9977 -0.4915 34 1 3.2177 -6.1025 -0.2972 35 1 3.2006 -5.8278 1.4613 36 1 2.1953 -10.4175 1.2670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:00 Heat of formation + Delta-G solvation = 95.290302 kcal Electronic energy + Delta-G solvation = -21632.823407 eV Core-core repulsion = 18125.340768 eV Total energy + Delta-G solvation = -3507.482639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.05675 -41.96422 -37.35686 -37.18431 -35.94063 -33.99688 -32.33845 -31.40116 -30.63405 -28.81930 -27.11721 -26.49660 -23.74670 -23.41067 -22.35309 -20.26114 -19.73668 -19.39443 -18.27458 -17.93349 -17.65218 -17.18631 -16.55146 -16.19757 -15.10538 -14.77836 -14.29118 -14.11480 -13.90201 -13.68578 -13.50108 -12.89165 -12.62870 -12.37764 -12.12097 -11.98998 -11.73526 -11.63403 -11.31633 -11.29557 -11.09407 -10.71162 -9.96571 -9.74863 -9.73001 -9.56106 -9.17255 -8.49764 -8.48916 -8.11259 -6.00776 -3.98354 -1.05134 -0.18103 0.56128 0.60632 1.76104 2.24492 3.10292 3.35922 3.42527 3.46970 3.50308 3.62820 3.79990 4.03826 4.40937 4.50468 4.60950 4.76391 5.07732 5.22472 5.33882 5.47799 5.53241 5.58631 5.82224 5.96644 6.02442 6.28941 6.47126 6.74899 6.81548 6.93543 7.00671 7.04528 7.38850 7.50647 7.84125 8.57864 9.03978 9.62538 11.12643 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003403 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.560252 B = 8225.583428 C = 8912.731211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.040 4.040 3 C 0.002 3.998 4 N 0.030 4.970 5 O -0.147 6.147 6 O -0.135 6.135 7 C -0.098 4.098 8 C 0.095 3.905 9 N -0.135 5.135 10 O -0.502 6.502 11 C 0.310 3.690 12 N -0.591 5.591 13 C 0.059 3.941 14 C -0.114 4.114 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.202 0.798 29 H 0.372 0.628 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.012 0.988 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 27.005 -4.183 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.047 4.047 3 C -0.089 4.089 4 N 0.552 4.448 5 O -0.362 6.362 6 O -0.352 6.352 7 C -0.120 4.120 8 C -0.051 4.051 9 N 0.177 4.823 10 O -0.556 6.556 11 C 0.084 3.916 12 N -0.224 5.224 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.045 4.045 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.188 1.188 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.203 0.797 28 H 0.218 0.782 29 H 0.204 0.796 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.204 25.723 -3.547 25.994 hybrid contribution 1.354 -0.078 -0.525 1.454 sum 2.558 25.646 -4.072 26.093 Atomic orbital electron populations 1.21188 0.85323 1.05442 1.05632 1.19811 0.99875 0.87285 0.97698 1.21192 0.92673 0.84180 1.10843 1.43216 1.01173 1.02005 0.98417 1.94589 1.68396 1.20695 1.52562 1.94549 0.95597 1.93455 1.51630 1.21456 0.91628 1.00102 0.98771 1.22675 1.01326 0.82827 0.98249 1.44397 1.04667 1.10940 1.22256 1.97700 1.70890 1.00250 1.86760 1.19646 0.81668 0.93412 0.96873 1.58121 1.24786 1.00171 1.39352 1.23464 0.91213 0.85814 1.06092 1.21773 0.98857 0.93585 1.00996 1.19446 0.95270 0.93377 0.96411 1.21158 0.94933 0.90469 1.49134 0.91099 1.25021 0.98287 0.95612 0.94607 1.69918 1.35651 0.98784 1.50160 0.86779 0.86366 0.77334 0.78877 1.20308 1.21453 1.18826 0.87900 0.87926 0.89299 0.79702 0.78155 0.79618 0.88146 0.89800 0.92476 0.93217 0.96583 0.96958 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 8.58 36.01 0.31 -0.49 16 2 C -0.04 -0.34 5.91 -104.28 -0.62 -0.96 16 3 C 0.00 0.01 6.87 -79.68 -0.55 -0.54 16 4 N 0.03 0.27 4.45 34.09 0.15 0.42 16 5 O -0.15 -1.37 18.56 -29.46 -0.55 -1.91 16 6 O -0.13 -1.25 15.57 -29.46 -0.46 -1.71 16 7 C -0.10 -0.58 9.63 -39.42 -0.38 -0.96 16 8 C 0.09 0.75 10.69 -17.53 -0.19 0.56 16 9 N -0.14 -1.69 3.57 -12.36 -0.04 -1.73 16 10 O -0.50 -9.23 13.99 -11.47 -0.16 -9.39 16 11 C 0.31 3.45 7.07 -154.73 -1.09 2.36 16 12 N -0.59 -7.39 5.65 -60.10 -0.34 -7.73 16 13 C 0.06 1.02 3.97 -3.83 -0.02 1.01 16 14 C -0.11 -2.29 5.47 -26.73 -0.15 -2.44 16 15 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 16 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 20 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 23 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.63 6.01 -51.93 -0.31 0.32 16 26 H 0.09 0.52 6.81 -51.93 -0.35 0.17 16 27 H 0.19 0.54 7.71 -52.49 -0.40 0.13 16 28 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.37 3.67 8.13 -39.29 -0.32 3.35 16 30 H 0.10 1.97 6.49 -51.93 -0.34 1.63 16 31 H 0.08 1.59 6.36 -51.99 -0.33 1.25 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -36.42 306.40 -8.00 -44.42 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.10 Total: -1.70 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -3.22 Total: -15.47 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.54 Total: -36.88 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.17 Total: -13.01 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.42 -8.00 -44.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.706 kcal (2) G-P(sol) polarization free energy of solvation -36.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds