Wall clock time and date at job start Tue Mar 31 2020 05:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38433 * 120.44216 * 2 1 4 4 N 1.48006 * 120.74341 * 0.03118 * 3 2 1 5 5 O 1.21799 * 119.99986 * 186.83734 * 4 3 2 6 6 O 1.21801 * 119.99900 * 6.84681 * 4 3 2 7 7 C 1.38776 * 118.51595 * 180.24882 * 3 2 1 8 8 C 1.38136 * 119.32179 * 359.76301 * 7 3 2 9 9 N 1.31979 * 120.83992 * 0.02562 * 8 7 3 10 10 O 1.41596 * 119.19833 * 179.97438 * 9 8 7 11 11 C 1.32511 * 121.60983 * 359.97438 * 9 8 7 12 12 N 1.39262 * 119.70029 * 180.02562 * 11 9 8 13 13 C 1.46899 * 111.00389 * 7.86887 * 12 11 9 14 14 C 1.52994 * 109.47013 * 172.27365 * 13 12 11 15 15 C 1.53000 * 109.46946 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47390 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99778 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00009 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99831 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00184 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47360 * 89.99999 * 20 18 16 22 22 H 1.48504 * 109.47127 * 210.00428 * 20 18 16 23 23 H 1.48499 * 109.47113 * 329.99716 * 20 18 16 24 24 H 1.09003 * 109.46795 * 277.16531 * 1 2 3 25 25 H 1.08999 * 109.47449 * 37.15662 * 1 2 3 26 26 H 1.08995 * 109.47203 * 157.16535 * 1 2 3 27 27 H 1.08002 * 120.33882 * 179.74701 * 7 3 2 28 28 H 1.08001 * 119.58424 * 179.97438 * 8 7 3 29 29 H 1.00900 * 110.99583 * 243.91194 * 12 11 9 30 30 H 1.09002 * 109.46903 * 52.26823 * 13 12 11 31 31 H 1.08997 * 109.46766 * 292.27194 * 13 12 11 32 32 H 1.08995 * 109.47479 * 300.00008 * 14 13 12 33 33 H 1.09003 * 109.47088 * 60.00359 * 14 13 12 34 34 H 1.09004 * 109.47389 * 300.00439 * 15 14 13 35 35 H 1.09002 * 109.47150 * 59.99969 * 15 14 13 36 36 H 0.97005 * 120.00352 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1935 0.0000 4 7 1.4950 2.4903 0.0007 5 8 2.1191 3.5287 -0.1249 6 8 0.2839 2.5191 0.1270 7 6 3.5954 1.1468 -0.0053 8 6 4.2310 -0.0796 -0.0054 9 7 3.5362 -1.2017 -0.0010 10 8 4.2235 -2.4397 -0.0018 11 6 2.2111 -1.1981 0.0041 12 7 1.5179 -2.4059 0.0091 13 6 2.4347 -3.5385 0.1955 14 6 1.6260 -4.8228 0.3883 15 6 2.5809 -6.0025 0.5818 16 6 1.7844 -7.2678 0.7710 17 1 0.7051 -7.2340 0.7545 18 6 2.4337 -8.4685 0.9653 19 7 1.7386 -9.5727 1.1299 20 14 4.3005 -8.5271 0.9932 21 1 4.7814 -8.3264 2.3837 22 1 4.7618 -9.8481 0.4957 23 1 4.8425 -7.4535 0.1221 24 1 -0.3633 0.1282 1.0197 25 1 -0.3634 0.8190 -0.6207 26 1 -0.3633 -0.9471 -0.3988 27 1 4.1719 2.0601 -0.0096 28 1 5.3102 -0.1208 -0.0099 29 1 0.9754 -2.5149 -0.8346 30 1 3.0541 -3.3635 1.0752 31 1 3.0717 -3.6386 -0.6833 32 1 0.9889 -4.7227 1.2670 33 1 1.0067 -4.9977 -0.4915 34 1 3.2177 -6.1025 -0.2972 35 1 3.2006 -5.8278 1.4613 36 1 2.1953 -10.4175 1.2670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157641371.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:59 Heat of formation + Delta-G solvation = 71.109707 kcal Electronic energy + Delta-G solvation = -21633.871956 eV Core-core repulsion = 18125.340768 eV Total energy + Delta-G solvation = -3508.531188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.77937 -42.74046 -38.34763 -37.96093 -36.71236 -35.77275 -34.00306 -32.49398 -31.90584 -29.55729 -28.55288 -27.54774 -24.79395 -24.30570 -23.63952 -21.95598 -20.55716 -20.15075 -19.03834 -18.98151 -18.70155 -18.36133 -17.91825 -17.06497 -16.38735 -16.01917 -15.66196 -15.42522 -14.82351 -14.62776 -14.44445 -14.22659 -13.98956 -13.71866 -13.37052 -13.10207 -12.83791 -12.72015 -12.52913 -12.35258 -12.13895 -11.92061 -11.85956 -11.73615 -11.52177 -11.41091 -10.80189 -10.41300 -9.72406 -9.27735 -8.33463 -6.36782 -1.77252 -0.85246 -0.16948 -0.10503 0.98451 1.31477 1.32584 1.46768 1.54397 2.20400 2.32682 2.85159 2.91037 3.01579 3.08942 3.31581 3.75369 4.02800 4.18684 4.24599 4.33706 4.53982 4.57092 4.67826 4.70739 4.85121 4.88992 5.10346 5.18862 5.21587 5.31580 5.54656 5.58028 5.64212 5.70950 5.86573 6.25289 6.31685 6.70371 7.28073 8.83153 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003403 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.560252 B = 8225.583428 C = 8912.731211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.029 4.029 3 C 0.005 3.995 4 N 0.030 4.970 5 O -0.143 6.143 6 O -0.142 6.142 7 C -0.066 4.066 8 C 0.104 3.896 9 N -0.156 5.156 10 O -0.571 6.571 11 C 0.297 3.703 12 N -0.592 5.592 13 C 0.091 3.909 14 C -0.105 4.105 15 C -0.004 4.004 16 C -0.531 4.531 17 H 0.037 0.963 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.257 1.257 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.227 0.773 28 H 0.228 0.772 29 H 0.385 0.615 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.012 0.988 35 H 0.008 0.992 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 30.151 -4.513 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 C -0.086 4.086 4 N 0.552 4.448 5 O -0.360 6.360 6 O -0.359 6.359 7 C -0.086 4.086 8 C -0.042 4.042 9 N 0.154 4.846 10 O -0.621 6.621 11 C 0.071 3.929 12 N -0.226 5.226 13 C -0.036 4.036 14 C -0.144 4.144 15 C -0.042 4.042 16 C -0.569 4.569 17 H 0.056 0.944 18 C -0.190 4.190 19 N -0.589 5.589 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.181 1.181 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.243 0.757 28 H 0.244 0.756 29 H 0.218 0.782 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.320 28.870 -3.882 29.222 hybrid contribution 0.886 -0.767 -0.442 1.253 sum 3.206 28.103 -4.324 28.614 Atomic orbital electron populations 1.21302 0.84102 1.06239 1.06138 1.19863 1.00580 0.86450 0.96573 1.21343 0.93390 0.83675 1.10173 1.43270 1.01163 1.02074 0.98315 1.94594 1.68318 1.20846 1.52250 1.94567 0.95768 1.93539 1.51977 1.21914 0.90933 1.00593 0.95156 1.23251 1.02690 0.81940 0.96293 1.44430 1.05019 1.10990 1.24113 1.97682 1.71175 1.03110 1.90171 1.19708 0.81597 0.93453 0.98094 1.57850 1.24284 0.99469 1.40996 1.22788 0.90391 0.86027 1.04359 1.21611 0.98069 0.93671 1.01026 1.19367 0.95573 0.93441 0.95850 1.21487 0.93933 0.92597 1.48856 0.94427 1.25945 1.03683 0.95157 0.94196 1.70049 1.37916 0.99581 1.51374 0.85701 0.79885 0.77882 0.79450 1.19252 1.20282 1.18063 0.87379 0.87045 0.88602 0.75688 0.75597 0.78161 0.90490 0.91499 0.92985 0.92569 0.96938 0.97367 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.58 71.24 0.61 -0.74 16 2 C -0.03 -0.42 5.91 -19.64 -0.12 -0.53 16 3 C 0.00 0.06 6.87 36.55 0.25 0.31 16 4 N 0.03 0.43 4.45 -46.05 -0.21 0.22 16 5 O -0.14 -2.12 18.56 18.89 0.35 -1.77 16 6 O -0.14 -2.23 15.57 18.89 0.29 -1.94 16 7 C -0.07 -0.50 9.63 22.37 0.22 -0.28 16 8 C 0.10 1.35 10.69 84.65 0.90 2.25 16 9 N -0.16 -3.74 3.57 -193.02 -0.69 -4.43 16 10 O -0.57 -21.50 13.99 -38.77 -0.54 -22.04 16 11 C 0.30 6.29 7.07 132.90 0.94 7.23 16 12 N -0.59 -14.65 5.65 -344.07 -1.94 -16.59 16 13 C 0.09 3.23 3.97 86.30 0.34 3.57 16 14 C -0.11 -4.36 5.47 30.59 0.17 -4.19 16 15 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 16 C -0.53 -32.21 9.66 25.60 0.25 -31.96 16 17 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 18 C 0.01 0.44 5.47 84.65 0.46 0.90 16 19 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 20 Si 0.95 47.31 27.47 68.60 1.88 49.20 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 24 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.11 1.08 6.01 -2.39 -0.01 1.07 16 26 H 0.10 0.95 6.81 -2.39 -0.02 0.93 16 27 H 0.23 -0.04 7.71 -2.91 -0.02 -0.06 16 28 H 0.23 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.39 7.39 8.13 -89.69 -0.73 6.66 16 30 H 0.08 3.13 6.49 -2.39 -0.02 3.12 16 31 H 0.07 2.62 6.36 -3.26 -0.02 2.60 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 35 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 36 H 0.27 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -82.16 306.40 3.93 -78.23 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.34 Total: 3.61 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.15 Total: -23.54 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -2.54 Total: -81.75 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: 0.10 Total: -25.75 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.20 kcal Total: -82.16 3.93 -78.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641371.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.340 kcal (2) G-P(sol) polarization free energy of solvation -82.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds