Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47331 * 2 1 4 4 C 1.52994 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.32718 * 119.99784 * 269.99616 * 5 4 3 7 7 H 1.08000 * 119.99810 * 138.64133 * 6 5 4 8 8 C 1.46803 * 119.99724 * 318.65059 * 6 5 4 9 9 N 1.29323 * 120.00272 * 345.70803 * 8 6 5 10 10 Si 1.86805 * 119.99610 * 165.71221 * 8 6 5 11 11 H 1.48497 * 109.47024 * 89.99896 * 10 8 6 12 12 H 1.48499 * 109.46899 * 209.99655 * 10 8 6 13 13 H 1.48497 * 109.47285 * 329.99584 * 10 8 6 14 14 C 1.39064 * 120.00404 * 89.99605 * 5 4 3 15 15 C 1.39113 * 119.70717 * 346.75553 * 14 5 4 16 16 C 1.38409 * 119.10412 * 179.79261 * 15 14 5 17 17 N 1.48020 * 120.74204 * 180.19702 * 16 15 14 18 18 O 1.31700 * 119.99885 * 180.28175 * 17 16 15 19 19 O 1.31697 * 119.99483 * 0.28536 * 17 16 15 20 20 C 1.38800 * 118.51518 * 0.47599 * 16 15 14 21 21 C 1.38223 * 119.33493 * 359.74652 * 20 16 15 22 22 N 1.31912 * 120.84460 * 0.02562 * 21 20 16 23 23 O 1.41603 * 119.19187 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47185 * 299.99815 * 1 2 3 25 25 H 1.09003 * 109.47510 * 59.99906 * 1 2 3 26 26 H 1.08998 * 109.47184 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46755 * 239.99901 * 2 1 3 28 28 H 1.08994 * 109.46980 * 120.00379 * 2 1 3 29 29 H 1.09002 * 109.47282 * 60.00224 * 3 2 1 30 30 H 1.09004 * 109.47275 * 300.00082 * 3 2 1 31 31 H 1.09003 * 109.47174 * 299.99943 * 4 3 2 32 32 H 1.09000 * 109.47730 * 59.99613 * 4 3 2 33 33 H 0.96998 * 120.00181 * 175.63136 * 9 8 6 34 34 H 1.08004 * 120.44685 * 0.02562 * 15 14 5 35 35 H 1.08003 * 120.33482 * 179.72333 * 20 16 15 36 36 H 1.07995 * 119.57969 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2791 3.4499 -1.1491 7 1 3.9891 4.4837 -1.2651 8 6 4.9174 2.7372 -2.2626 9 7 5.5109 1.6076 -2.0520 10 14 4.8723 3.4620 -3.9837 11 1 6.0592 4.3312 -4.1859 12 1 4.8866 2.3642 -4.9836 13 1 3.6354 4.2667 -4.1497 14 6 4.2906 3.4786 1.2045 15 6 3.8054 2.9349 2.3896 16 6 4.0475 3.5950 3.5818 17 7 3.5519 3.0468 4.8643 18 8 3.7859 3.6899 5.9896 19 8 2.8770 1.9160 4.8801 20 6 4.7604 4.7854 3.5472 21 6 5.2092 5.2710 2.3334 22 7 4.9676 4.6182 1.2128 23 8 5.4433 5.1479 -0.0112 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 0.8891 32 1 3.9330 0.9287 -0.8908 33 1 5.8773 1.1059 -2.7969 34 1 3.2506 2.0084 2.3798 35 1 4.9622 5.3270 4.4596 36 1 5.7646 6.1966 2.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = 98.915515 kcal Electronic energy + Delta-G solvation = -22483.701140 eV Core-core repulsion = 18976.375701 eV Total energy + Delta-G solvation = -3507.325438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.52203 -38.28364 -37.38540 -34.74879 -33.76498 -33.39658 -33.30112 -30.01917 -29.05424 -28.94361 -26.12188 -25.12848 -23.96948 -22.35964 -21.46590 -20.92483 -18.99849 -17.82371 -17.43898 -16.30837 -16.21401 -15.59444 -15.41878 -15.30210 -15.17555 -14.61942 -14.18786 -13.99310 -13.68959 -12.80137 -12.68598 -12.31070 -12.23259 -12.04379 -11.67948 -11.59330 -11.20806 -10.99697 -10.87024 -10.83974 -10.72362 -10.49614 -10.46044 -10.39404 -10.12592 -10.11608 -9.48868 -8.23144 -7.82042 -7.61374 -6.79331 -4.16712 -0.27832 1.57040 1.74361 1.81392 2.72822 2.75458 2.82546 3.32604 3.54941 3.78825 4.15242 4.23312 5.03518 5.07074 5.17716 5.21115 5.23725 5.45382 5.48698 5.66808 5.75576 5.82899 5.88521 5.93261 5.96049 6.10761 6.25513 6.29029 6.35925 6.39858 6.40725 6.57696 6.77338 6.92200 7.49316 7.51039 7.86272 8.15622 8.54922 8.76031 9.34314 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.007001 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.690730 B = 3998.628810 C = 5604.822965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.086 3.914 5 N -0.330 5.330 6 C -0.160 4.160 7 H 0.138 0.862 8 C 0.035 3.965 9 N -0.760 5.760 10 Si 0.952 3.048 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.252 1.252 14 C 0.214 3.786 15 C -0.086 4.086 16 C 0.057 3.943 17 N 0.003 4.997 18 O -0.213 6.213 19 O -0.227 6.227 20 C -0.300 4.300 21 C 0.181 3.819 22 N -0.210 5.210 23 O -0.575 6.575 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.301 0.699 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -3.630 -2.395 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.175 4.175 4 C -0.036 4.036 5 N -0.011 5.011 6 C -0.301 4.301 7 H 0.155 0.845 8 C -0.189 4.189 9 N -0.387 5.387 10 Si 0.773 3.227 11 H -0.183 1.183 12 H -0.196 1.196 13 H -0.175 1.175 14 C -0.008 4.008 15 C -0.112 4.112 16 C -0.037 4.037 17 N 0.461 4.539 18 O -0.394 6.394 19 O -0.405 6.405 20 C -0.331 4.331 21 C 0.031 3.969 22 N 0.088 4.912 23 O -0.621 6.621 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.711 -3.711 -3.449 6.918 hybrid contribution 0.180 0.193 -0.206 0.334 sum -4.531 -3.518 -3.655 6.802 Atomic orbital electron populations 1.21753 0.95838 1.01335 1.01861 1.21426 0.95819 0.96302 1.02260 1.22042 0.95139 0.97300 1.02979 1.22280 0.93400 0.82254 1.05671 1.42082 1.45538 1.11398 1.02083 1.22203 1.24884 0.98624 0.84413 0.84460 1.27875 0.92244 0.95296 1.03449 1.68812 1.21055 1.12520 1.36350 0.85484 0.81232 0.79486 0.76452 1.18315 1.19574 1.17540 1.17408 1.02894 0.94787 0.85744 1.20612 1.01207 1.01013 0.88372 1.19914 1.06108 0.97363 0.80275 1.50225 0.98826 1.00912 1.03947 1.96187 1.64624 1.60342 1.18291 1.96189 1.40874 1.07609 1.95813 1.19948 1.14644 0.99900 0.98584 1.21679 0.95333 0.96758 0.83156 1.41992 1.28259 1.11988 1.08955 1.97411 1.77784 1.79593 1.07301 0.92681 0.92832 0.92894 0.91782 0.91759 0.91982 0.90914 0.91102 0.86103 0.88621 0.82593 0.83360 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.44 5.93 -26.74 -0.16 -1.60 16 3 C -0.14 -1.99 5.36 -26.74 -0.14 -2.13 16 4 C 0.09 1.51 4.57 -4.04 -0.02 1.49 16 5 N -0.33 -7.07 2.54 -113.50 -0.29 -7.36 16 6 C -0.16 -3.67 7.26 -13.71 -0.10 -3.77 16 7 H 0.14 3.43 6.62 -52.49 -0.35 3.08 16 8 C 0.04 0.74 5.25 -15.15 -0.08 0.66 16 9 N -0.76 -15.73 11.36 56.00 0.64 -15.09 16 10 Si 0.95 16.43 29.67 -169.99 -5.04 11.38 16 11 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 12 H -0.27 -4.31 7.11 56.52 0.40 -3.91 16 13 H -0.25 -4.27 7.11 56.52 0.40 -3.87 16 14 C 0.21 4.74 7.22 -154.83 -1.12 3.63 16 15 C -0.09 -1.70 8.39 -39.19 -0.33 -2.03 16 16 C 0.06 1.15 6.93 -79.67 -0.55 0.60 16 17 N 0.00 0.05 4.98 34.10 0.17 0.22 16 18 O -0.21 -4.52 19.25 -31.57 -0.61 -5.13 16 19 O -0.23 -4.79 19.25 -31.57 -0.61 -5.39 16 20 C -0.30 -5.70 9.65 -39.38 -0.38 -6.08 16 21 C 0.18 3.62 10.69 -17.52 -0.19 3.43 16 22 N -0.21 -5.02 3.59 -12.36 -0.04 -5.06 16 23 O -0.57 -16.31 16.05 -11.47 -0.18 -16.50 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.93 7.22 -51.93 -0.37 0.55 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.19 6.81 -51.93 -0.35 0.83 16 32 H 0.12 2.19 5.49 -51.93 -0.29 1.91 16 33 H 0.30 5.52 8.27 -40.82 -0.34 5.18 16 34 H 0.16 2.78 5.45 -52.48 -0.29 2.50 16 35 H 0.15 2.52 7.67 -52.48 -0.40 2.11 16 36 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -29.03 313.64 -8.08 -37.11 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.14 Total: 8.13 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.70 Total: -7.04 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.47 Total: -27.29 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.40 Total: -27.02 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.04 Total: 11.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.03 -8.08 -37.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.029 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds