Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47331 * 2 1 4 4 C 1.52994 * 109.47421 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47499 * 180.02562 * 4 3 2 6 6 C 1.32718 * 119.99784 * 269.99616 * 5 4 3 7 7 H 1.08000 * 119.99810 * 138.64133 * 6 5 4 8 8 C 1.46803 * 119.99724 * 318.65059 * 6 5 4 9 9 N 1.29323 * 120.00272 * 345.70803 * 8 6 5 10 10 Si 1.86805 * 119.99610 * 165.71221 * 8 6 5 11 11 H 1.48497 * 109.47024 * 89.99896 * 10 8 6 12 12 H 1.48499 * 109.46899 * 209.99655 * 10 8 6 13 13 H 1.48497 * 109.47285 * 329.99584 * 10 8 6 14 14 C 1.39064 * 120.00404 * 89.99605 * 5 4 3 15 15 C 1.39113 * 119.70717 * 346.75553 * 14 5 4 16 16 C 1.38409 * 119.10412 * 179.79261 * 15 14 5 17 17 N 1.48020 * 120.74204 * 180.19702 * 16 15 14 18 18 O 1.31700 * 119.99885 * 180.28175 * 17 16 15 19 19 O 1.31697 * 119.99483 * 0.28536 * 17 16 15 20 20 C 1.38800 * 118.51518 * 0.47599 * 16 15 14 21 21 C 1.38223 * 119.33493 * 359.74652 * 20 16 15 22 22 N 1.31912 * 120.84460 * 0.02562 * 21 20 16 23 23 O 1.41603 * 119.19187 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47185 * 299.99815 * 1 2 3 25 25 H 1.09003 * 109.47510 * 59.99906 * 1 2 3 26 26 H 1.08998 * 109.47184 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46755 * 239.99901 * 2 1 3 28 28 H 1.08994 * 109.46980 * 120.00379 * 2 1 3 29 29 H 1.09002 * 109.47282 * 60.00224 * 3 2 1 30 30 H 1.09004 * 109.47275 * 300.00082 * 3 2 1 31 31 H 1.09003 * 109.47174 * 299.99943 * 4 3 2 32 32 H 1.09000 * 109.47730 * 59.99613 * 4 3 2 33 33 H 0.96998 * 120.00181 * 175.63136 * 9 8 6 34 34 H 1.08004 * 120.44685 * 0.02562 * 15 14 5 35 35 H 1.08003 * 120.33482 * 179.72333 * 20 16 15 36 36 H 1.07995 * 119.57969 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2791 3.4499 -1.1491 7 1 3.9891 4.4837 -1.2651 8 6 4.9174 2.7372 -2.2626 9 7 5.5109 1.6076 -2.0520 10 14 4.8723 3.4620 -3.9837 11 1 6.0592 4.3312 -4.1859 12 1 4.8866 2.3642 -4.9836 13 1 3.6354 4.2667 -4.1497 14 6 4.2906 3.4786 1.2045 15 6 3.8054 2.9349 2.3896 16 6 4.0475 3.5950 3.5818 17 7 3.5519 3.0468 4.8643 18 8 3.7859 3.6899 5.9896 19 8 2.8770 1.9160 4.8801 20 6 4.7604 4.7854 3.5472 21 6 5.2092 5.2710 2.3334 22 7 4.9676 4.6182 1.2128 23 8 5.4433 5.1479 -0.0112 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 0.8891 32 1 3.9330 0.9287 -0.8908 33 1 5.8773 1.1059 -2.7969 34 1 3.2506 2.0084 2.3798 35 1 4.9622 5.3270 4.4596 36 1 5.7646 6.1966 2.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = 74.723047 kcal Electronic energy + Delta-G solvation = -22484.750204 eV Core-core repulsion = 18976.375701 eV Total energy + Delta-G solvation = -3508.374502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61691 -40.03972 -37.37250 -36.84745 -35.87813 -34.52123 -33.06075 -31.82042 -31.03692 -30.60425 -27.91228 -26.61097 -25.60330 -23.73702 -23.26322 -22.30378 -20.91507 -19.61484 -18.66565 -17.72758 -17.64602 -17.22023 -17.00353 -16.68519 -16.60692 -15.89441 -15.46493 -15.31018 -14.85575 -14.67879 -14.50733 -14.31723 -13.90050 -13.76609 -13.44377 -12.94252 -12.67195 -12.46322 -12.16760 -12.07781 -11.99719 -11.69447 -11.59584 -11.39625 -10.62861 -10.40310 -10.32787 -10.27014 -10.15407 -9.82424 -9.49198 -6.34244 -1.86934 0.17943 0.51198 0.53699 0.79718 0.99973 1.58154 1.81442 2.03932 2.12521 2.42761 2.57830 2.65728 3.27874 3.44883 3.57638 3.87822 3.94757 4.05864 4.09018 4.24239 4.33326 4.42600 4.47903 4.51845 4.63283 4.75352 4.84669 4.88563 5.00153 5.12148 5.20747 5.29204 5.31229 5.40905 5.72651 6.23563 6.37402 6.81768 7.26191 8.20614 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.007001 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.690730 B = 3998.628810 C = 5604.822965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.067 3.933 5 N -0.398 5.398 6 C 0.395 3.605 7 H 0.218 0.782 8 C -0.061 4.061 9 N -0.571 5.571 10 Si 1.039 2.961 11 H -0.254 1.254 12 H -0.212 1.212 13 H -0.211 1.211 14 C 0.295 3.705 15 C -0.158 4.158 16 C 0.014 3.986 17 N -0.047 5.047 18 O -0.645 6.645 19 O -0.641 6.641 20 C -0.231 4.231 21 C 0.152 3.848 22 N -0.286 5.286 23 O -0.618 6.618 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.383 0.617 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -4.408 -37.058 37.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.180 4.180 4 C -0.051 4.051 5 N -0.075 5.075 6 C 0.226 3.774 7 H 0.235 0.765 8 C -0.299 4.299 9 N -0.195 5.195 10 Si 0.846 3.154 11 H -0.178 1.178 12 H -0.133 1.133 13 H -0.133 1.133 14 C 0.088 3.912 15 C -0.188 4.188 16 C -0.123 4.123 17 N 0.251 4.749 18 O -0.716 6.716 19 O -0.712 6.712 20 C -0.260 4.260 21 C 0.018 3.982 22 N -0.008 5.008 23 O -0.656 6.656 24 H 0.052 0.948 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.178 0.822 33 H 0.206 0.794 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.168 -4.909 -36.487 36.816 hybrid contribution 0.239 -0.031 1.540 1.559 sum 0.071 -4.940 -34.947 35.294 Atomic orbital electron populations 1.21767 0.94941 1.02491 1.01921 1.21418 0.96718 0.93930 1.03389 1.22224 0.91023 1.00472 1.04258 1.23340 0.96548 0.76281 1.08963 1.44320 1.44034 1.15764 1.03431 1.28067 0.69735 0.98519 0.81098 0.76546 1.30679 0.95110 0.97239 1.06837 1.68531 1.00355 1.06526 1.44062 0.84370 0.83927 0.81297 0.65848 1.17774 1.13313 1.13257 1.17060 1.00146 0.89665 0.84298 1.19737 1.07639 1.03449 0.87994 1.19411 1.10590 0.99300 0.83039 1.47644 1.20299 1.06336 1.00667 1.95636 1.85209 1.68378 1.22372 1.95596 1.61857 1.17507 1.96247 1.20157 1.09425 0.98779 0.97669 1.21353 0.97683 0.97677 0.81536 1.41271 1.38223 1.13640 1.07653 1.97080 1.83886 1.75618 1.09018 0.94762 0.90700 0.91545 0.88186 0.93106 0.93277 0.87385 0.89017 0.82174 0.79397 0.84143 0.86203 0.79041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.14 -2.45 5.36 30.59 0.16 -2.29 16 4 C 0.07 1.25 4.57 86.38 0.39 1.65 16 5 N -0.40 -9.75 2.54 -513.01 -1.30 -11.05 16 6 C 0.39 6.45 7.26 86.80 0.63 7.08 16 7 H 0.22 3.27 6.62 -2.91 -0.02 3.25 16 8 C -0.06 -0.48 5.25 87.30 0.46 -0.02 16 9 N -0.57 -4.76 11.36 23.26 0.26 -4.49 16 10 Si 1.04 1.08 29.67 68.60 2.04 3.11 16 11 H -0.25 -1.55 7.11 99.48 0.71 -0.85 16 12 H -0.21 0.50 7.11 99.48 0.71 1.21 16 13 H -0.21 0.05 7.11 99.48 0.71 0.76 16 14 C 0.29 11.50 7.22 132.99 0.96 12.46 16 15 C -0.16 -7.96 8.39 22.52 0.19 -7.77 16 16 C 0.01 0.88 6.93 36.55 0.25 1.13 16 17 N -0.05 -3.85 4.98 -46.04 -0.23 -4.08 16 18 O -0.65 -56.77 19.25 3.51 0.07 -56.70 16 19 O -0.64 -54.46 19.25 3.52 0.07 -54.39 16 20 C -0.23 -12.80 9.65 22.40 0.22 -12.58 16 21 C 0.15 6.72 10.69 84.68 0.90 7.62 16 22 N -0.29 -12.00 3.59 -193.01 -0.69 -12.69 16 23 O -0.62 -24.51 16.05 -38.79 -0.62 -25.13 16 24 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.29 7.22 -2.39 -0.02 1.27 16 30 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 2.28 6.81 -2.39 -0.02 2.26 16 32 H 0.16 1.66 5.49 -2.39 -0.01 1.65 16 33 H 0.38 0.49 8.27 -92.71 -0.77 -0.28 16 34 H 0.14 7.01 5.45 -2.91 -0.02 7.00 16 35 H 0.12 6.97 7.67 -2.91 -0.02 6.95 16 36 H 0.19 7.00 8.06 -2.91 -0.02 6.98 16 Total: -1.00 -131.74 313.64 5.76 -125.98 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 1.11 Total: 35.44 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.07 Total: 4.01 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: -1.96 Total: -32.32 kcal Atomic # 8 Polarization: -135.74 SS G_CDS: -0.49 Total: -136.22 kcal Atomic # 14 Polarization: 1.08 SS G_CDS: 2.04 Total: 3.11 kcal Total: -131.74 5.76 -125.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.701 kcal (2) G-P(sol) polarization free energy of solvation -131.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -125.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds