Wall clock time and date at job start Tue Mar 31 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86803 * 120.00044 * 2 1 4 4 H 1.48494 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46909 * 300.00041 * 3 2 1 6 6 H 1.48494 * 109.47263 * 59.99961 * 3 2 1 7 7 C 1.39922 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00196 * 197.80070 * 7 2 1 9 9 C 1.41316 * 119.99694 * 17.79099 * 7 2 1 10 10 C 1.40826 * 120.23012 * 24.57308 * 9 7 2 11 11 C 1.37535 * 119.91009 * 180.02562 * 10 9 7 12 12 C 1.38667 * 120.38404 * 359.97438 * 11 10 9 13 13 C 1.39047 * 120.47247 * 359.97438 * 12 11 10 14 14 N 1.39886 * 119.96466 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99825 * 0.02562 * 14 13 12 16 16 C 1.53005 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.09007 * 109.51944 * 59.86609 * 16 15 14 18 18 C 1.53137 * 109.52547 * 179.97438 * 16 15 14 19 19 O 1.43078 * 109.15295 * 175.21270 * 18 16 15 20 20 C 1.43073 * 113.59194 * 302.05296 * 19 18 16 21 21 C 1.53142 * 109.15317 * 57.95103 * 20 19 18 22 22 O 1.43073 * 109.52311 * 299.67251 * 16 15 14 23 23 C 1.38639 * 120.07425 * 0.28029 * 13 12 11 24 24 F 1.35095 * 120.19045 * 179.74640 * 23 13 12 25 25 H 0.96998 * 120.00085 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.04582 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.80698 * 180.02562 * 11 10 9 28 28 H 1.08006 * 119.76449 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00307 * 179.97438 * 14 13 12 30 30 H 1.08993 * 109.47523 * 59.99343 * 15 14 13 31 31 H 1.09001 * 109.46651 * 299.99295 * 15 14 13 32 32 H 1.08997 * 109.52863 * 295.11752 * 18 16 15 33 33 H 1.09002 * 109.52600 * 55.24541 * 18 16 15 34 34 H 1.09003 * 109.52091 * 177.84953 * 20 19 18 35 35 H 1.08993 * 109.52161 * 297.98121 * 20 19 18 36 36 H 1.08994 * 109.52863 * 64.58663 * 21 20 19 37 37 H 1.08994 * 109.52451 * 184.72531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3965 1.2124 7 6 2.0081 -1.2117 -0.0005 8 1 3.0493 -1.2342 0.2854 9 6 1.3522 -2.4061 -0.3750 10 6 0.2216 -2.3613 -1.2135 11 6 -0.4119 -3.5277 -1.5734 12 6 0.0562 -4.7502 -1.1158 13 6 1.1717 -4.8131 -0.2882 14 7 1.6345 -6.0519 0.1677 15 6 0.9443 -7.2822 -0.2274 16 6 1.6478 -8.4864 0.4019 17 1 1.6313 -8.3914 1.4877 18 6 0.9269 -9.7732 -0.0098 19 8 1.6546 -10.8993 0.4896 20 6 3.0094 -10.9537 0.0332 21 6 3.7304 -9.6670 0.4450 22 8 3.0029 -8.5405 -0.0541 23 6 1.8221 -3.6488 0.0910 24 9 2.9030 -3.7068 0.8991 25 1 -0.4850 0.8400 0.0004 26 1 -0.1474 -1.4123 -1.5733 27 1 -1.2786 -3.4914 -2.2168 28 1 -0.4488 -5.6600 -1.4050 29 1 2.4129 -6.0965 0.7448 30 1 0.9636 -7.3771 -1.3131 31 1 -0.0896 -7.2449 0.1157 32 1 -0.0801 -9.7760 0.4073 33 1 0.8709 -9.8275 -1.0971 34 1 3.5107 -11.8116 0.4816 35 1 3.0245 -11.0494 -1.0524 36 1 3.7853 -9.6120 1.5322 37 1 4.7377 -9.6646 0.0288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168267946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:40 Heat of formation + Delta-G solvation = -116.887394 kcal Electronic energy + Delta-G solvation = -21670.701461 eV Core-core repulsion = 18134.098145 eV Total energy + Delta-G solvation = -3536.603316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.03647 -40.12901 -37.64870 -36.32691 -35.15893 -33.41688 -31.79291 -29.50924 -29.00874 -27.47206 -25.34839 -25.13068 -23.18246 -21.42827 -20.55239 -20.38531 -17.51180 -17.00501 -16.86761 -16.30042 -16.05450 -15.79618 -15.46718 -14.97757 -14.86556 -14.44014 -14.03456 -13.66327 -13.40125 -13.17978 -13.11544 -12.74259 -12.52790 -12.00137 -11.75808 -11.67863 -11.46050 -11.12163 -11.00411 -10.89380 -10.76428 -10.54893 -10.39882 -9.84001 -9.53743 -9.34500 -9.31471 -8.82469 -7.36343 -6.80873 -6.24351 -4.38172 2.73288 3.03314 3.08319 3.14930 3.23100 3.43843 3.47338 3.92066 4.01089 4.49960 4.60913 4.75350 4.76150 4.86852 4.91995 5.06603 5.26183 5.34978 5.49034 5.54356 5.60814 5.78795 5.92853 6.01574 6.24233 6.67708 6.70254 6.87167 6.92194 6.98505 7.18943 7.30038 7.62551 7.76439 8.04145 8.13401 8.33678 8.51078 8.65960 8.81291 8.98332 10.14750 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038309 B = 0.003575 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.728719 B = 7829.345499 C = 8389.565583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.183 4.183 11 C -0.078 4.078 12 C -0.288 4.288 13 C 0.206 3.794 14 N -0.754 5.754 15 C 0.149 3.851 16 C 0.044 3.956 17 H 0.073 0.927 18 C 0.034 3.966 19 O -0.380 6.380 20 C 0.023 3.977 21 C 0.023 3.977 22 O -0.366 6.366 23 C -0.097 4.097 24 F -0.167 7.167 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.396 0.604 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -14.918 -0.482 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.114 3.886 10 C -0.204 4.204 11 C -0.097 4.097 12 C -0.311 4.311 13 C 0.106 3.894 14 N -0.388 5.388 15 C 0.023 3.977 16 C -0.014 4.014 17 H 0.091 0.909 18 C -0.044 4.044 19 O -0.298 6.298 20 C -0.054 4.054 21 C -0.054 4.054 22 O -0.285 6.285 23 C -0.121 4.121 24 F -0.147 7.147 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.230 0.770 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.655 -14.881 -0.525 14.982 hybrid contribution 0.791 0.653 0.390 1.098 sum 2.446 -14.228 -0.135 14.437 Atomic orbital electron populations 1.69858 1.07613 1.29276 1.34314 1.25914 0.94732 1.01403 0.92068 0.86220 0.81124 0.80614 0.78577 1.18272 1.19587 1.19908 1.19542 0.98386 0.90986 1.39261 0.90022 1.17411 0.91669 0.90281 0.89247 1.21023 0.99548 0.97155 1.02646 1.20463 0.98033 0.92580 0.98628 1.19714 1.02374 0.97017 1.12029 1.17419 0.93972 0.83133 0.94861 1.44119 1.34767 1.02069 1.57854 1.21002 0.95060 0.82413 0.99189 1.23053 0.83388 0.95618 0.99381 0.90918 1.23186 0.96162 0.85233 0.99801 1.88087 1.23508 1.45581 1.72656 1.23266 0.83363 0.98783 0.99983 1.23235 0.96405 0.86172 0.99569 1.88216 1.22918 1.45193 1.72185 1.17280 0.94289 0.93253 1.07281 1.91201 1.53904 1.97123 1.72457 0.90795 0.86026 0.88953 0.88789 0.76990 0.92165 0.91311 0.87386 0.91673 0.87898 0.92067 0.92195 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 10.96 55.55 0.61 -19.65 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.45 -12.45 8.78 -37.78 -0.33 -12.79 16 8 H 0.08 2.24 7.74 -52.49 -0.41 1.83 16 9 C 0.12 3.25 5.58 -106.78 -0.60 2.65 16 10 C -0.18 -4.77 8.69 -38.86 -0.34 -5.11 16 11 C -0.08 -1.81 10.01 -39.68 -0.40 -2.20 16 12 C -0.29 -6.41 9.32 -39.12 -0.36 -6.77 16 13 C 0.21 4.79 6.65 -83.73 -0.56 4.23 16 14 N -0.75 -14.49 5.63 -58.61 -0.33 -14.82 16 15 C 0.15 2.21 4.61 -4.04 -0.02 2.19 16 16 C 0.04 0.55 2.93 -26.66 -0.08 0.47 16 17 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 18 C 0.03 0.35 6.34 37.23 0.24 0.59 16 19 O -0.38 -4.27 10.85 -48.79 -0.53 -4.80 16 20 C 0.02 0.21 7.05 37.23 0.26 0.47 16 21 C 0.02 0.23 7.05 37.23 0.26 0.50 16 22 O -0.37 -5.02 10.25 -48.79 -0.50 -5.52 16 23 C -0.10 -2.54 7.32 -38.47 -0.28 -2.83 16 24 F -0.17 -4.37 16.08 2.25 0.04 -4.33 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 26 H 0.12 3.23 6.16 -52.49 -0.32 2.90 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.82 6.70 -52.48 -0.35 1.47 16 29 H 0.40 7.62 7.84 -40.82 -0.32 7.30 16 30 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 31 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -30.05 311.80 -8.08 -38.13 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.74 Total: 9.16 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.29 Total: -16.72 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.28 Total: -34.47 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.03 Total: -10.31 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.04 Total: -4.33 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.05 -8.08 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168267946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.755 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds