Wall clock time and date at job start Tue Mar 31 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86803 * 120.00044 * 2 1 4 4 H 1.48494 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46909 * 300.00041 * 3 2 1 6 6 H 1.48494 * 109.47263 * 59.99961 * 3 2 1 7 7 C 1.39922 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00196 * 197.80070 * 7 2 1 9 9 C 1.41316 * 119.99694 * 17.79099 * 7 2 1 10 10 C 1.40826 * 120.23012 * 24.57308 * 9 7 2 11 11 C 1.37535 * 119.91009 * 180.02562 * 10 9 7 12 12 C 1.38667 * 120.38404 * 359.97438 * 11 10 9 13 13 C 1.39047 * 120.47247 * 359.97438 * 12 11 10 14 14 N 1.39886 * 119.96466 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99825 * 0.02562 * 14 13 12 16 16 C 1.53005 * 109.47132 * 179.97438 * 15 14 13 17 17 H 1.09007 * 109.51944 * 59.86609 * 16 15 14 18 18 C 1.53137 * 109.52547 * 179.97438 * 16 15 14 19 19 O 1.43078 * 109.15295 * 175.21270 * 18 16 15 20 20 C 1.43073 * 113.59194 * 302.05296 * 19 18 16 21 21 C 1.53142 * 109.15317 * 57.95103 * 20 19 18 22 22 O 1.43073 * 109.52311 * 299.67251 * 16 15 14 23 23 C 1.38639 * 120.07425 * 0.28029 * 13 12 11 24 24 F 1.35095 * 120.19045 * 179.74640 * 23 13 12 25 25 H 0.96998 * 120.00085 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.04582 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.80698 * 180.02562 * 11 10 9 28 28 H 1.08006 * 119.76449 * 180.02562 * 12 11 10 29 29 H 0.97001 * 120.00307 * 179.97438 * 14 13 12 30 30 H 1.08993 * 109.47523 * 59.99343 * 15 14 13 31 31 H 1.09001 * 109.46651 * 299.99295 * 15 14 13 32 32 H 1.08997 * 109.52863 * 295.11752 * 18 16 15 33 33 H 1.09002 * 109.52600 * 55.24541 * 18 16 15 34 34 H 1.09003 * 109.52091 * 177.84953 * 20 19 18 35 35 H 1.08993 * 109.52161 * 297.98121 * 20 19 18 36 36 H 1.08994 * 109.52863 * 64.58663 * 21 20 19 37 37 H 1.08994 * 109.52451 * 184.72531 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7024 1.3465 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8838 2.3965 1.2124 7 6 2.0081 -1.2117 -0.0005 8 1 3.0493 -1.2342 0.2854 9 6 1.3522 -2.4061 -0.3750 10 6 0.2216 -2.3613 -1.2135 11 6 -0.4119 -3.5277 -1.5734 12 6 0.0562 -4.7502 -1.1158 13 6 1.1717 -4.8131 -0.2882 14 7 1.6345 -6.0519 0.1677 15 6 0.9443 -7.2822 -0.2274 16 6 1.6478 -8.4864 0.4019 17 1 1.6313 -8.3914 1.4877 18 6 0.9269 -9.7732 -0.0098 19 8 1.6546 -10.8993 0.4896 20 6 3.0094 -10.9537 0.0332 21 6 3.7304 -9.6670 0.4450 22 8 3.0029 -8.5405 -0.0541 23 6 1.8221 -3.6488 0.0910 24 9 2.9030 -3.7068 0.8991 25 1 -0.4850 0.8400 0.0004 26 1 -0.1474 -1.4123 -1.5733 27 1 -1.2786 -3.4914 -2.2168 28 1 -0.4488 -5.6600 -1.4050 29 1 2.4129 -6.0965 0.7448 30 1 0.9636 -7.3771 -1.3131 31 1 -0.0896 -7.2449 0.1157 32 1 -0.0801 -9.7760 0.4073 33 1 0.8709 -9.8275 -1.0971 34 1 3.5107 -11.8116 0.4816 35 1 3.0245 -11.0494 -1.0524 36 1 3.7853 -9.6120 1.5322 37 1 4.7377 -9.6646 0.0288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168267946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:39 Heat of formation + Delta-G solvation = -136.214679 kcal Electronic energy + Delta-G solvation = -21671.539555 eV Core-core repulsion = 18134.098145 eV Total energy + Delta-G solvation = -3537.441410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.05267 -41.01596 -39.40448 -37.39960 -36.62630 -35.12084 -32.98316 -31.42831 -30.14294 -28.81474 -27.24318 -26.30600 -24.27088 -22.71810 -22.26678 -21.91192 -19.29751 -18.15448 -17.94627 -17.73137 -17.39059 -17.06620 -16.85360 -16.41944 -16.01217 -15.96940 -15.92371 -14.99876 -14.88060 -14.68171 -14.46204 -14.32209 -13.69783 -13.56053 -13.28927 -13.05001 -12.81922 -12.67755 -12.53340 -12.41428 -12.13138 -11.78862 -11.70656 -11.42285 -11.32720 -11.15524 -10.56641 -10.20980 -9.31314 -8.69743 -8.00740 -6.40663 0.88678 1.15589 1.37518 1.51047 1.53647 2.20366 2.44953 2.64651 2.70142 2.80334 3.62084 3.64198 3.76668 3.92308 4.03271 4.09715 4.13517 4.30390 4.47244 4.49265 4.57087 4.60762 4.72608 4.84971 4.87474 4.88418 5.03360 5.10221 5.28100 5.46375 5.74540 5.89247 5.95350 6.02392 6.10659 6.19863 6.47541 6.72440 6.82908 6.86039 7.07460 8.28254 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038309 B = 0.003575 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.728719 B = 7829.345499 C = 8389.565583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.256 1.256 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.090 3.910 10 C -0.211 4.211 11 C -0.070 4.070 12 C -0.283 4.283 13 C 0.212 3.788 14 N -0.750 5.750 15 C 0.144 3.856 16 C 0.049 3.951 17 H 0.069 0.931 18 C 0.038 3.962 19 O -0.393 6.393 20 C 0.022 3.978 21 C 0.018 3.982 22 O -0.395 6.395 23 C -0.138 4.138 24 F -0.176 7.176 25 H 0.292 0.708 26 H 0.109 0.891 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.394 0.606 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 -16.295 -0.991 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.176 4.176 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.232 4.232 11 C -0.089 4.089 12 C -0.306 4.306 13 C 0.110 3.890 14 N -0.382 5.382 15 C 0.020 3.980 16 C -0.009 4.009 17 H 0.087 0.913 18 C -0.039 4.039 19 O -0.312 6.312 20 C -0.054 4.054 21 C -0.059 4.059 22 O -0.315 6.315 23 C -0.162 4.162 24 F -0.155 7.155 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.227 0.773 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.978 -16.316 -1.030 16.378 hybrid contribution 0.993 0.899 0.552 1.449 sum 1.971 -15.417 -0.479 15.550 Atomic orbital electron populations 1.69874 1.08805 1.30860 1.34118 1.26724 0.95587 1.04315 0.90982 0.85133 0.79089 0.75896 0.79418 1.18864 1.18001 1.18648 1.19685 0.98091 0.92745 1.41972 0.91657 1.17782 0.92661 0.91003 0.89948 1.20989 1.00314 0.97868 1.04031 1.20834 0.98249 0.91937 0.97915 1.20115 1.01667 0.98115 1.10709 1.17573 0.93587 0.83786 0.94101 1.44305 1.34648 1.02232 1.56985 1.21267 0.95836 0.81271 0.99612 1.22980 0.83374 0.95696 0.98871 0.91295 1.23208 0.96582 0.83821 1.00318 1.88074 1.24520 1.45582 1.73060 1.23417 0.82474 0.98985 1.00521 1.23458 0.96993 0.85700 0.99730 1.88164 1.23579 1.47007 1.72751 1.17644 0.95241 0.94463 1.08847 1.91155 1.54377 1.97204 1.72813 0.89687 0.87287 0.85673 0.85070 0.77276 0.91822 0.89550 0.85537 0.91004 0.85457 0.91584 0.92147 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.60 10.96 21.82 0.24 -42.36 16 2 C 0.04 2.09 5.14 85.25 0.44 2.53 16 3 Si 0.98 39.27 29.60 68.60 2.03 41.30 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -28.58 8.78 23.44 0.21 -28.38 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.09 5.14 5.58 -21.26 -0.12 5.02 16 10 C -0.21 -11.22 8.69 22.74 0.20 -11.02 16 11 C -0.07 -3.18 10.01 22.21 0.22 -2.96 16 12 C -0.28 -12.01 9.32 22.57 0.21 -11.80 16 13 C 0.21 9.75 6.65 38.15 0.25 10.01 16 14 N -0.75 -28.11 5.63 -339.34 -1.91 -30.02 16 15 C 0.14 3.94 4.61 86.38 0.40 4.34 16 16 C 0.05 1.14 2.93 30.64 0.09 1.23 16 17 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 18 C 0.04 0.69 6.34 72.03 0.46 1.15 16 19 O -0.39 -7.85 10.85 -136.02 -1.48 -9.33 16 20 C 0.02 0.35 7.05 72.03 0.51 0.86 16 21 C 0.02 0.32 7.05 72.03 0.51 0.83 16 22 O -0.40 -10.28 10.25 -136.02 -1.39 -11.68 16 23 C -0.14 -7.46 7.32 22.99 0.17 -7.29 16 24 F -0.18 -9.58 16.08 44.97 0.72 -8.86 16 25 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 26 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 27 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 28 H 0.13 4.55 6.70 -2.91 -0.02 4.53 16 29 H 0.39 15.11 7.84 -92.71 -0.73 14.38 16 30 H 0.06 1.74 7.94 -2.39 -0.02 1.72 16 31 H 0.09 2.10 7.94 -2.39 -0.02 2.08 16 32 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.88 311.80 2.11 -64.76 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.37 Total: 31.68 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 3.54 Total: -35.50 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.67 Total: -72.38 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -2.87 Total: -21.00 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 0.72 Total: -8.86 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -66.88 2.11 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168267946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.452 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds