Wall clock time and date at job start Tue Mar 31 2020 05:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47343 * 300.00180 * 3 2 1 6 6 H 1.48507 * 109.46785 * 60.00233 * 3 2 1 7 7 C 1.39912 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99667 * 199.59714 * 7 2 1 9 9 C 1.40991 * 120.00075 * 19.59913 * 7 2 1 10 10 C 1.41000 * 120.32158 * 36.78013 * 9 7 2 11 11 F 1.35096 * 120.11888 * 0.02562 * 10 9 7 12 12 C 1.37743 * 119.76071 * 180.25407 * 10 9 7 13 13 C 1.38792 * 120.43263 * 359.76717 * 12 10 9 14 14 C 1.38223 * 120.65705 * 0.02562 * 13 12 10 15 15 C 1.38626 * 120.22693 * 359.97438 * 14 13 12 16 16 N 1.38797 * 120.22230 * 179.97438 * 15 14 13 17 17 C 1.46503 * 119.99732 * 0.02562 * 16 15 14 18 18 C 1.53003 * 109.46690 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.52653 * 59.86674 * 18 17 16 20 20 C 1.53142 * 109.52110 * 179.97438 * 18 17 16 21 21 O 1.43077 * 109.15155 * 175.21231 * 20 18 17 22 22 C 1.43070 * 113.59269 * 302.04945 * 21 20 18 23 23 C 1.53142 * 109.15216 * 57.95089 * 22 21 20 24 24 O 1.43070 * 109.52486 * 299.66994 * 18 17 16 25 25 H 0.96997 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.78144 * 179.79077 * 12 10 9 27 27 H 1.07997 * 119.66605 * 180.02562 * 13 12 10 28 28 H 1.08002 * 119.88697 * 180.02562 * 14 13 12 29 29 H 0.96997 * 119.99937 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47269 * 59.99836 * 17 16 15 31 31 H 1.08999 * 109.46985 * 299.98890 * 17 16 15 32 32 H 1.08996 * 109.52992 * 295.11540 * 20 18 17 33 33 H 1.09000 * 109.52573 * 55.24804 * 20 18 17 34 34 H 1.09006 * 109.52366 * 177.85280 * 22 21 20 35 35 H 1.08997 * 109.52921 * 297.97910 * 22 21 20 36 36 H 1.09004 * 109.52464 * 64.59058 * 23 22 21 37 37 H 1.08997 * 109.52721 * 184.71660 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3965 -1.2125 6 1 1.8843 2.3964 1.2126 7 6 2.0087 -1.2117 -0.0005 8 1 3.0418 -1.2389 0.3132 9 6 1.3650 -2.3972 -0.4106 10 6 0.4319 -2.3715 -1.4674 11 9 0.1495 -1.2086 -2.0944 12 6 -0.1941 -3.5356 -1.8552 13 6 0.0912 -4.7339 -1.2157 14 6 1.0061 -4.7800 -0.1806 15 6 1.6520 -3.6248 0.2319 16 7 2.5702 -3.6711 1.2717 17 6 2.8600 -4.9439 1.9369 18 6 3.8985 -4.7190 3.0377 19 1 3.5095 -4.0072 3.7657 20 6 4.2019 -6.0487 3.7343 21 8 5.2530 -5.8515 4.6848 22 6 6.4576 -5.3383 4.1081 23 6 6.1542 -4.0086 3.4115 24 8 5.1029 -4.2053 2.4611 25 1 -0.4849 0.8401 0.0004 26 1 -0.9114 -3.5157 -2.6624 27 1 -0.4065 -5.6393 -1.5301 28 1 1.2190 -5.7193 0.3081 29 1 3.0201 -2.8608 1.5579 30 1 3.2512 -5.6539 1.2082 31 1 1.9448 -5.3409 2.3760 32 1 3.3082 -6.4031 4.2479 33 1 4.5127 -6.7854 2.9936 34 1 7.1975 -5.1781 4.8924 35 1 6.8461 -6.0513 3.3810 36 1 5.8423 -3.2721 4.1521 37 1 7.0483 -3.6536 2.8989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168271979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:51 Heat of formation + Delta-G solvation = -107.691734 kcal Electronic energy + Delta-G solvation = -22120.602676 eV Core-core repulsion = 18584.398114 eV Total energy + Delta-G solvation = -3536.204562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.79486 -40.03284 -37.83255 -36.18904 -34.54906 -33.45734 -31.81500 -29.69776 -28.70354 -27.53588 -25.50475 -24.74278 -23.14390 -21.40252 -20.66015 -20.03702 -17.32279 -16.97542 -16.86850 -16.25542 -16.19013 -15.58200 -15.25137 -14.99007 -14.49075 -14.11158 -13.79843 -13.63860 -13.49625 -13.28286 -13.13087 -12.64975 -12.42485 -11.84392 -11.66620 -11.48550 -11.23704 -11.16670 -11.11855 -10.80950 -10.70337 -10.53587 -10.38622 -10.05156 -9.46059 -9.23895 -8.94949 -8.84934 -7.09201 -6.67164 -6.32476 -4.16791 2.80636 2.96786 3.16522 3.21519 3.22043 3.53581 3.57955 4.07324 4.18510 4.62438 4.74451 4.84206 4.88033 4.98238 5.05415 5.16740 5.35064 5.43125 5.50651 5.60600 5.63422 5.89130 6.04011 6.13695 6.16889 6.46684 6.55932 6.78276 7.00382 7.05011 7.27705 7.40799 7.41399 7.67851 7.88796 8.15683 8.40319 8.59849 8.79240 8.97644 9.06550 10.38099 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.005358 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.839459 B = 5224.970193 C = 6565.462128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.476 4.476 8 H 0.077 0.923 9 C 0.041 3.959 10 C 0.061 3.939 11 F -0.143 7.143 12 C -0.181 4.181 13 C -0.162 4.162 14 C -0.196 4.196 15 C 0.151 3.849 16 N -0.737 5.737 17 C 0.147 3.853 18 C 0.045 3.955 19 H 0.074 0.926 20 C 0.034 3.966 21 O -0.380 6.380 22 C 0.023 3.977 23 C 0.023 3.977 24 O -0.365 6.365 25 H 0.278 0.722 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.402 0.598 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -8.197 7.118 13.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.506 4.506 8 H 0.095 0.905 9 C 0.035 3.965 10 C 0.039 3.961 11 F -0.122 7.122 12 C -0.202 4.202 13 C -0.182 4.182 14 C -0.219 4.219 15 C 0.051 3.949 16 N -0.372 5.372 17 C 0.021 3.979 18 C -0.014 4.014 19 H 0.092 0.908 20 C -0.044 4.044 21 O -0.299 6.299 22 C -0.054 4.054 23 C -0.054 4.054 24 O -0.283 6.283 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.238 0.762 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.417 -8.179 7.167 13.752 hybrid contribution 0.384 1.311 0.031 1.367 sum 8.801 -6.867 7.198 13.283 Atomic orbital electron populations 1.69809 1.07529 1.29095 1.34869 1.25659 0.94523 1.00684 0.92883 0.86373 0.80903 0.81776 0.78293 1.18665 1.19853 1.20403 1.18941 0.98344 0.91230 1.42070 0.90532 1.17077 0.95269 0.91875 0.92253 1.17448 1.03057 0.80301 0.95282 1.91313 1.92530 1.47788 1.80548 1.20424 1.03715 0.92756 1.03320 1.19923 1.02438 0.95825 0.99968 1.20046 1.03741 0.95522 1.02616 1.17641 0.93652 0.93656 0.89983 1.43804 1.47433 1.08112 1.37827 1.20988 0.94874 0.89022 0.93034 1.23036 0.86317 0.95581 0.96423 0.90829 1.23193 0.91704 0.96432 0.93058 1.88079 1.22360 1.85245 1.34208 1.23263 0.87615 0.95488 0.99000 1.23228 0.92141 0.96611 0.93419 1.88220 1.21635 1.85130 1.33356 0.91121 0.88542 0.88594 0.88805 0.76180 0.92565 0.91741 0.87482 0.91793 0.87982 0.92147 0.92172 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.71 11.11 55.55 0.62 -21.09 16 2 C 0.08 2.13 4.52 -17.32 -0.08 2.05 16 3 Si 0.90 19.83 29.60 -169.99 -5.03 14.79 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.48 -12.74 8.13 -37.91 -0.31 -13.05 16 8 H 0.08 1.97 7.14 -52.49 -0.37 1.60 16 9 C 0.04 1.09 5.41 -106.56 -0.58 0.51 16 10 C 0.06 1.65 6.68 -38.72 -0.26 1.40 16 11 F -0.14 -4.04 14.27 2.25 0.03 -4.01 16 12 C -0.18 -4.37 9.99 -39.56 -0.40 -4.76 16 13 C -0.16 -3.54 10.03 -39.38 -0.40 -3.93 16 14 C -0.20 -4.25 9.29 -39.44 -0.37 -4.62 16 15 C 0.15 3.57 6.68 -83.32 -0.56 3.01 16 16 N -0.74 -14.87 5.53 -58.22 -0.32 -15.19 16 17 C 0.15 2.27 4.60 -4.04 -0.02 2.25 16 18 C 0.04 0.60 2.93 -26.66 -0.08 0.52 16 19 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 20 C 0.03 0.37 6.34 37.23 0.24 0.61 16 21 O -0.38 -4.52 10.85 -48.79 -0.53 -5.05 16 22 C 0.02 0.23 7.05 37.23 0.26 0.49 16 23 C 0.02 0.25 7.05 37.23 0.26 0.52 16 24 O -0.36 -5.33 10.25 -48.79 -0.50 -5.83 16 25 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 26 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.09 1.76 6.71 -52.49 -0.35 1.40 16 29 H 0.40 8.39 6.79 -40.82 -0.28 8.12 16 30 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.06 0.93 7.94 -51.93 -0.41 0.51 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -30.56 309.54 -8.11 -38.67 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.77 Total: 8.05 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.27 Total: -15.01 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.30 Total: -36.27 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.03 Total: -10.88 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.03 Total: -4.01 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.56 -8.11 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168271979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.023 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds