Wall clock time and date at job start Tue Mar 31 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30916 * 1 3 3 Si 1.86800 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47096 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47343 * 300.00180 * 3 2 1 6 6 H 1.48507 * 109.46785 * 60.00233 * 3 2 1 7 7 C 1.39912 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99667 * 199.59714 * 7 2 1 9 9 C 1.40991 * 120.00075 * 19.59913 * 7 2 1 10 10 C 1.41000 * 120.32158 * 36.78013 * 9 7 2 11 11 F 1.35096 * 120.11888 * 0.02562 * 10 9 7 12 12 C 1.37743 * 119.76071 * 180.25407 * 10 9 7 13 13 C 1.38792 * 120.43263 * 359.76717 * 12 10 9 14 14 C 1.38223 * 120.65705 * 0.02562 * 13 12 10 15 15 C 1.38626 * 120.22693 * 359.97438 * 14 13 12 16 16 N 1.38797 * 120.22230 * 179.97438 * 15 14 13 17 17 C 1.46503 * 119.99732 * 0.02562 * 16 15 14 18 18 C 1.53003 * 109.46690 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.52653 * 59.86674 * 18 17 16 20 20 C 1.53142 * 109.52110 * 179.97438 * 18 17 16 21 21 O 1.43077 * 109.15155 * 175.21231 * 20 18 17 22 22 C 1.43070 * 113.59269 * 302.04945 * 21 20 18 23 23 C 1.53142 * 109.15216 * 57.95089 * 22 21 20 24 24 O 1.43070 * 109.52486 * 299.66994 * 18 17 16 25 25 H 0.96997 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.78144 * 179.79077 * 12 10 9 27 27 H 1.07997 * 119.66605 * 180.02562 * 13 12 10 28 28 H 1.08002 * 119.88697 * 180.02562 * 14 13 12 29 29 H 0.96997 * 119.99937 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47269 * 59.99836 * 17 16 15 31 31 H 1.08999 * 109.46985 * 299.98890 * 17 16 15 32 32 H 1.08996 * 109.52992 * 295.11540 * 20 18 17 33 33 H 1.09000 * 109.52573 * 55.24804 * 20 18 17 34 34 H 1.09006 * 109.52366 * 177.85280 * 22 21 20 35 35 H 1.08997 * 109.52921 * 297.97910 * 22 21 20 36 36 H 1.09004 * 109.52464 * 64.59058 * 23 22 21 37 37 H 1.08997 * 109.52721 * 184.71660 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3965 -1.2125 6 1 1.8843 2.3964 1.2126 7 6 2.0087 -1.2117 -0.0005 8 1 3.0418 -1.2389 0.3132 9 6 1.3650 -2.3972 -0.4106 10 6 0.4319 -2.3715 -1.4674 11 9 0.1495 -1.2086 -2.0944 12 6 -0.1941 -3.5356 -1.8552 13 6 0.0912 -4.7339 -1.2157 14 6 1.0061 -4.7800 -0.1806 15 6 1.6520 -3.6248 0.2319 16 7 2.5702 -3.6711 1.2717 17 6 2.8600 -4.9439 1.9369 18 6 3.8985 -4.7190 3.0377 19 1 3.5095 -4.0072 3.7657 20 6 4.2019 -6.0487 3.7343 21 8 5.2530 -5.8515 4.6848 22 6 6.4576 -5.3383 4.1081 23 6 6.1542 -4.0086 3.4115 24 8 5.1029 -4.2053 2.4611 25 1 -0.4849 0.8401 0.0004 26 1 -0.9114 -3.5157 -2.6624 27 1 -0.4065 -5.6393 -1.5301 28 1 1.2190 -5.7193 0.3081 29 1 3.0201 -2.8608 1.5579 30 1 3.2512 -5.6539 1.2082 31 1 1.9448 -5.3409 2.3760 32 1 3.3082 -6.4031 4.2479 33 1 4.5127 -6.7854 2.9936 34 1 7.1975 -5.1781 4.8924 35 1 6.8461 -6.0513 3.3810 36 1 5.8423 -3.2721 4.1521 37 1 7.0483 -3.6536 2.8989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168271979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:50 Heat of formation + Delta-G solvation = -127.432315 kcal Electronic energy + Delta-G solvation = -22121.458692 eV Core-core repulsion = 18584.398114 eV Total energy + Delta-G solvation = -3537.060578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.86376 -40.98680 -39.54901 -37.20798 -35.98035 -35.37215 -33.02845 -31.45467 -29.96522 -28.95084 -27.09034 -26.19988 -24.26287 -22.85632 -21.99779 -21.77168 -19.23462 -18.31799 -17.95021 -17.51676 -17.33286 -16.90361 -16.69226 -16.21671 -15.99486 -15.84641 -15.61876 -15.37852 -14.85490 -14.68598 -14.43283 -14.30959 -13.48028 -13.35549 -13.11572 -13.04792 -12.94513 -12.72547 -12.50513 -12.41778 -12.21109 -11.84671 -11.68699 -11.39687 -11.26875 -10.85238 -10.55618 -10.17140 -9.02864 -8.59557 -8.07725 -6.14607 0.96497 1.10291 1.35795 1.45235 1.49579 2.24510 2.56418 2.71879 2.81916 2.93278 3.60064 3.68106 3.83444 3.96896 4.07181 4.15977 4.28820 4.34289 4.44350 4.51626 4.60347 4.64813 4.69126 4.76088 4.81926 4.90279 4.93091 5.19095 5.34950 5.58392 5.66117 5.81351 5.97624 6.04424 6.06415 6.26003 6.52798 6.77482 6.94100 7.15239 7.21586 8.47171 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.005358 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.839459 B = 5224.970193 C = 6565.462128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.037 3.963 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.073 0.927 9 C -0.001 4.001 10 C 0.025 3.975 11 F -0.161 7.161 12 C -0.202 4.202 13 C -0.142 4.142 14 C -0.201 4.201 15 C 0.153 3.847 16 N -0.738 5.738 17 C 0.143 3.857 18 C 0.049 3.951 19 H 0.064 0.936 20 C 0.039 3.961 21 O -0.394 6.394 22 C 0.024 3.976 23 C 0.017 3.983 24 O -0.394 6.394 25 H 0.280 0.720 26 H 0.111 0.889 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -10.143 8.109 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.531 4.531 8 H 0.091 0.909 9 C -0.006 4.006 10 C 0.004 3.996 11 F -0.140 7.140 12 C -0.222 4.222 13 C -0.161 4.161 14 C -0.224 4.224 15 C 0.050 3.950 16 N -0.370 5.370 17 C 0.019 3.981 18 C -0.009 4.009 19 H 0.082 0.918 20 C -0.038 4.038 21 O -0.313 6.313 22 C -0.053 4.053 23 C -0.060 4.060 24 O -0.314 6.314 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.155 0.845 28 H 0.149 0.851 29 H 0.230 0.770 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.442 -10.158 8.187 16.105 hybrid contribution 0.111 1.724 -0.259 1.747 sum 9.554 -8.435 7.928 15.009 Atomic orbital electron populations 1.69878 1.08951 1.29841 1.36992 1.26446 0.95190 1.03810 0.92242 0.85377 0.79675 0.77611 0.78379 1.18091 1.20074 1.19182 1.19092 0.98326 0.92271 1.43448 0.90857 1.17458 0.96534 0.93398 0.93232 1.17972 1.04594 0.80725 0.96350 1.91247 1.92821 1.48978 1.80948 1.20696 1.04402 0.92694 1.04433 1.20451 1.00994 0.96306 0.98390 1.20467 1.03052 0.96315 1.02584 1.17915 0.93621 0.93301 0.90157 1.44013 1.46217 1.09731 1.37018 1.21242 0.96402 0.86899 0.93581 1.22970 0.85695 0.96867 0.95392 0.91769 1.23210 0.92482 0.94905 0.93244 1.88066 1.23057 1.85299 1.34877 1.23406 0.87368 0.94628 0.99874 1.23452 0.91742 0.97587 0.93183 1.88166 1.22574 1.85523 1.35098 0.90994 0.87104 0.84544 0.85066 0.77026 0.91852 0.89974 0.85619 0.90868 0.85515 0.91466 0.92420 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.40 11.11 21.83 0.24 -47.16 16 2 C 0.04 2.00 4.52 85.24 0.39 2.39 16 3 Si 0.97 41.81 29.60 68.60 2.03 43.84 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.50 -27.71 8.13 23.35 0.19 -27.52 16 8 H 0.07 3.92 7.14 -2.91 -0.02 3.90 16 9 C 0.00 -0.05 5.41 -21.12 -0.11 -0.16 16 10 C 0.03 1.41 6.68 22.83 0.15 1.56 16 11 F -0.16 -9.48 14.27 44.97 0.64 -8.84 16 12 C -0.20 -9.59 9.99 22.28 0.22 -9.37 16 13 C -0.14 -5.83 10.03 22.40 0.22 -5.60 16 14 C -0.20 -8.19 9.29 22.36 0.21 -7.98 16 15 C 0.15 7.12 6.68 38.94 0.26 7.38 16 16 N -0.74 -29.28 5.53 -338.12 -1.87 -31.15 16 17 C 0.14 4.11 4.60 86.38 0.40 4.51 16 18 C 0.05 1.23 2.93 30.64 0.09 1.32 16 19 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 20 C 0.04 0.75 6.34 72.03 0.46 1.21 16 21 O -0.39 -8.37 10.85 -136.02 -1.48 -9.85 16 22 C 0.02 0.40 7.05 72.03 0.51 0.91 16 23 C 0.02 0.34 7.05 72.03 0.51 0.85 16 24 O -0.39 -11.06 10.25 -136.02 -1.39 -12.45 16 25 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 26 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.13 4.33 6.71 -2.91 -0.02 4.31 16 29 H 0.40 16.70 6.79 -92.71 -0.63 16.07 16 30 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 31 H 0.08 2.10 7.94 -2.39 -0.02 2.08 16 32 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.75 309.54 2.12 -65.62 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.46 Total: 30.49 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.49 Total: -30.51 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.63 Total: -78.31 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -2.87 Total: -22.30 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.64 Total: -8.84 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.75 2.12 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168271979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.808 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds