Wall clock time and date at job start Tue Mar 31 2020 05:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48506 * 109.47470 * 179.72784 * 3 2 1 5 5 H 1.48500 * 109.47193 * 299.72599 * 3 2 1 6 6 H 1.48499 * 109.47393 * 59.72604 * 3 2 1 7 7 C 1.39927 * 120.00218 * 179.72569 * 2 1 3 8 8 H 1.08004 * 119.99753 * 162.25404 * 7 2 1 9 9 C 1.41410 * 120.00326 * 342.25220 * 7 2 1 10 10 C 1.40743 * 120.19923 * 155.64587 * 9 7 2 11 11 C 1.37871 * 119.87002 * 180.02562 * 10 9 7 12 12 F 1.35101 * 119.86226 * 179.97438 * 11 10 9 13 13 C 1.38742 * 120.27743 * 359.97438 * 11 10 9 14 14 C 1.39253 * 120.39807 * 359.97438 * 13 11 10 15 15 N 1.39680 * 119.94242 * 180.02562 * 14 13 11 16 16 C 1.46499 * 119.99724 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.47124 * 180.02562 * 16 15 14 18 18 H 1.08992 * 109.52358 * 59.87169 * 17 16 15 19 19 C 1.53145 * 109.52479 * 180.02562 * 17 16 15 20 20 O 1.43073 * 109.15024 * 175.21158 * 19 17 16 21 21 C 1.43075 * 113.59241 * 302.04872 * 20 19 17 22 22 C 1.53140 * 109.15411 * 57.95545 * 21 20 19 23 23 O 1.43075 * 109.52146 * 299.67436 * 17 16 15 24 24 C 1.38333 * 120.12178 * 359.76768 * 14 13 11 25 25 H 0.96996 * 120.00619 * 0.27356 * 1 2 3 26 26 H 1.08002 * 120.06380 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.80764 * 180.02562 * 13 11 10 28 28 H 0.96996 * 120.00127 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47196 * 300.00547 * 16 15 14 30 30 H 1.09006 * 109.47020 * 60.00055 * 16 15 14 31 31 H 1.09002 * 109.52408 * 295.12034 * 19 17 16 32 32 H 1.09002 * 109.52165 * 55.31275 * 19 17 16 33 33 H 1.09004 * 109.52172 * 177.85455 * 21 20 19 34 34 H 1.08996 * 109.52532 * 297.98178 * 21 20 19 35 35 H 1.08999 * 109.52684 * 64.58082 * 22 21 20 36 36 H 1.08994 * 109.52492 * 184.78589 * 22 21 20 37 37 H 1.08008 * 120.14125 * 180.25348 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3465 0.0067 5 1 1.8885 2.3935 -1.2158 6 1 1.8785 2.3994 1.2091 7 6 2.0079 -1.2118 0.0058 8 1 3.0494 -1.2353 -0.2792 9 6 1.3515 -2.4055 0.3848 10 6 1.8273 -3.6499 -0.0690 11 6 1.1818 -4.8095 0.3043 12 9 1.6384 -6.0039 -0.1319 13 6 0.0651 -4.7551 1.1259 14 6 -0.4147 -3.5301 1.5824 15 7 -1.5394 -3.4864 2.4097 16 6 -2.2132 -4.7286 2.7959 17 6 -3.4062 -4.4028 3.6968 18 1 -4.1042 -3.7612 3.1591 19 6 -4.1112 -5.7006 4.1018 20 8 -5.1551 -5.3971 5.0319 21 6 -4.6961 -4.7252 6.2087 22 6 -3.9912 -3.4274 5.8038 23 8 -2.9471 -3.7315 4.8739 24 6 0.2234 -2.3568 1.2224 25 1 -0.4851 0.8399 -0.0040 26 1 2.6960 -3.6962 -0.7091 27 1 -0.4345 -5.6682 1.4140 28 1 -1.8746 -2.6337 2.7278 29 1 -2.5636 -5.2450 1.9022 30 1 -1.5145 -5.3686 3.3349 31 1 -4.5373 -6.1749 3.2177 32 1 -3.3929 -6.3752 4.5678 33 1 -5.5460 -4.4931 6.8506 34 1 -3.9985 -5.3675 6.7462 35 1 -4.7094 -2.7528 5.3377 36 1 -3.5650 -2.9532 6.6878 37 1 -0.1461 -1.4068 1.5796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168272949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:45 Heat of formation + Delta-G solvation = -119.083924 kcal Electronic energy + Delta-G solvation = -21571.420822 eV Core-core repulsion = 18034.722257 eV Total energy + Delta-G solvation = -3536.698565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -47.67993 -40.11062 -37.79961 -36.29573 -35.02213 -33.36380 -31.83710 -29.34039 -28.99347 -27.55200 -25.50083 -25.09973 -23.08849 -21.49605 -20.75828 -20.28704 -17.63564 -16.98163 -16.90032 -16.28069 -16.06921 -15.49382 -15.20415 -15.08507 -14.80099 -14.40152 -14.33907 -13.89742 -13.63295 -13.51359 -13.25771 -12.88325 -12.49231 -11.92688 -11.88564 -11.62882 -11.47538 -11.12359 -11.04961 -10.83818 -10.54021 -10.51792 -10.42305 -10.06519 -9.66962 -9.33724 -9.31321 -8.69420 -7.35060 -6.83847 -6.28932 -4.44746 2.74506 2.98114 3.06858 3.12587 3.21821 3.46127 3.49477 3.91270 4.04675 4.52418 4.58768 4.77594 4.78654 4.89354 4.94182 5.08820 5.28271 5.37207 5.50751 5.56919 5.62512 5.76386 5.84317 5.97513 6.36150 6.65626 6.72373 6.80301 6.92346 7.01802 7.18923 7.31004 7.55465 7.72685 7.96576 8.05223 8.33786 8.60527 8.70791 8.87871 8.95736 10.14577 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.004406 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.169106 B = 6353.948224 C = 7786.519629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.158 3.842 10 C -0.289 4.289 11 C 0.142 3.858 12 F -0.169 7.169 13 C -0.335 4.335 14 C 0.241 3.759 15 N -0.750 5.750 16 C 0.146 3.854 17 C 0.045 3.955 18 H 0.074 0.926 19 C 0.033 3.967 20 O -0.380 6.380 21 C 0.023 3.977 22 C 0.024 3.976 23 O -0.366 6.366 24 C -0.239 4.239 25 H 0.280 0.720 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -4.437 9.569 13.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.154 3.846 10 C -0.310 4.310 11 C 0.123 3.877 12 F -0.148 7.148 13 C -0.359 4.359 14 C 0.141 3.859 15 N -0.384 5.384 16 C 0.020 3.980 17 C -0.014 4.014 18 H 0.091 0.909 19 C -0.044 4.044 20 O -0.298 6.298 21 C -0.054 4.054 22 C -0.054 4.054 23 O -0.285 6.285 24 C -0.264 4.264 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.231 0.769 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.365 -4.531 9.555 14.125 hybrid contribution 0.182 0.868 0.056 0.888 sum -9.183 -3.663 9.610 13.788 Atomic orbital electron populations 1.69860 1.07619 1.29085 1.34421 1.25915 0.94712 1.01336 0.92076 0.86270 0.81125 0.80863 0.78541 1.18287 1.19980 1.19691 1.19601 0.98201 0.91069 1.39756 0.90117 1.17065 0.89735 0.91091 0.86676 1.20831 1.06558 0.91671 1.11955 1.17220 0.94606 0.79276 0.96632 1.91322 1.88895 1.45922 1.88649 1.19686 1.04761 0.96015 1.15413 1.17273 0.85996 0.93423 0.89174 1.44197 1.31454 1.06501 1.56207 1.21021 0.92033 0.89183 0.95765 1.23048 0.97106 0.94174 0.87030 0.90851 1.23197 0.91053 0.96120 0.94060 1.88085 1.33138 1.77990 1.30634 1.23266 1.00256 0.93939 0.87954 1.23234 0.91443 0.96449 0.94232 1.88211 1.32381 1.77864 1.30069 1.20753 1.02739 0.95329 1.07528 0.90948 0.88077 0.88407 0.76919 0.91418 0.92256 0.87404 0.91709 0.87928 0.92091 0.92177 0.87780 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 10.96 55.55 0.61 -19.23 16 2 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 8 H 0.08 2.05 7.91 -52.48 -0.42 1.63 16 9 C 0.16 4.23 5.57 -106.86 -0.60 3.64 16 10 C -0.29 -7.41 9.76 -38.77 -0.38 -7.79 16 11 C 0.14 3.47 7.28 -39.53 -0.29 3.18 16 12 F -0.17 -3.89 17.26 2.25 0.04 -3.85 16 13 C -0.34 -7.75 9.30 -39.02 -0.36 -8.11 16 14 C 0.24 5.57 6.64 -83.87 -0.56 5.01 16 15 N -0.75 -14.20 5.63 -58.69 -0.33 -14.53 16 16 C 0.15 2.20 4.60 -4.04 -0.02 2.18 16 17 C 0.04 0.57 2.93 -26.66 -0.08 0.49 16 18 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 19 C 0.03 0.36 6.34 37.23 0.24 0.59 16 20 O -0.38 -4.36 10.85 -48.82 -0.53 -4.89 16 21 C 0.02 0.21 7.05 37.23 0.26 0.47 16 22 C 0.02 0.24 7.05 37.23 0.26 0.50 16 23 O -0.37 -5.00 10.25 -48.82 -0.50 -5.50 16 24 C -0.24 -6.14 8.53 -38.66 -0.33 -6.47 16 25 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 26 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.10 2.04 6.70 -52.49 -0.35 1.69 16 28 H 0.40 7.33 8.37 -40.82 -0.34 6.99 16 29 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 30 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 31 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -28.94 313.47 -8.07 -37.01 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.77 Total: 9.80 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.28 Total: -16.84 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.28 Total: -33.76 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.03 Total: -10.39 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.04 Total: -3.85 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.94 -8.07 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168272949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.074 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds