Wall clock time and date at job start Tue Mar 31 2020 05:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 119.99834 * 2 1 4 4 H 1.48506 * 109.47470 * 179.72784 * 3 2 1 5 5 H 1.48500 * 109.47193 * 299.72599 * 3 2 1 6 6 H 1.48499 * 109.47393 * 59.72604 * 3 2 1 7 7 C 1.39927 * 120.00218 * 179.72569 * 2 1 3 8 8 H 1.08004 * 119.99753 * 162.25404 * 7 2 1 9 9 C 1.41410 * 120.00326 * 342.25220 * 7 2 1 10 10 C 1.40743 * 120.19923 * 155.64587 * 9 7 2 11 11 C 1.37871 * 119.87002 * 180.02562 * 10 9 7 12 12 F 1.35101 * 119.86226 * 179.97438 * 11 10 9 13 13 C 1.38742 * 120.27743 * 359.97438 * 11 10 9 14 14 C 1.39253 * 120.39807 * 359.97438 * 13 11 10 15 15 N 1.39680 * 119.94242 * 180.02562 * 14 13 11 16 16 C 1.46499 * 119.99724 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.47124 * 180.02562 * 16 15 14 18 18 H 1.08992 * 109.52358 * 59.87169 * 17 16 15 19 19 C 1.53145 * 109.52479 * 180.02562 * 17 16 15 20 20 O 1.43073 * 109.15024 * 175.21158 * 19 17 16 21 21 C 1.43075 * 113.59241 * 302.04872 * 20 19 17 22 22 C 1.53140 * 109.15411 * 57.95545 * 21 20 19 23 23 O 1.43075 * 109.52146 * 299.67436 * 17 16 15 24 24 C 1.38333 * 120.12178 * 359.76768 * 14 13 11 25 25 H 0.96996 * 120.00619 * 0.27356 * 1 2 3 26 26 H 1.08002 * 120.06380 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.80764 * 180.02562 * 13 11 10 28 28 H 0.96996 * 120.00127 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47196 * 300.00547 * 16 15 14 30 30 H 1.09006 * 109.47020 * 60.00055 * 16 15 14 31 31 H 1.09002 * 109.52408 * 295.12034 * 19 17 16 32 32 H 1.09002 * 109.52165 * 55.31275 * 19 17 16 33 33 H 1.09004 * 109.52172 * 177.85455 * 21 20 19 34 34 H 1.08996 * 109.52532 * 297.98178 * 21 20 19 35 35 H 1.08999 * 109.52684 * 64.58082 * 22 21 20 36 36 H 1.08994 * 109.52492 * 184.78589 * 22 21 20 37 37 H 1.08008 * 120.14125 * 180.25348 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3465 0.0067 5 1 1.8885 2.3935 -1.2158 6 1 1.8785 2.3994 1.2091 7 6 2.0079 -1.2118 0.0058 8 1 3.0494 -1.2353 -0.2792 9 6 1.3515 -2.4055 0.3848 10 6 1.8273 -3.6499 -0.0690 11 6 1.1818 -4.8095 0.3043 12 9 1.6384 -6.0039 -0.1319 13 6 0.0651 -4.7551 1.1259 14 6 -0.4147 -3.5301 1.5824 15 7 -1.5394 -3.4864 2.4097 16 6 -2.2132 -4.7286 2.7959 17 6 -3.4062 -4.4028 3.6968 18 1 -4.1042 -3.7612 3.1591 19 6 -4.1112 -5.7006 4.1018 20 8 -5.1551 -5.3971 5.0319 21 6 -4.6961 -4.7252 6.2087 22 6 -3.9912 -3.4274 5.8038 23 8 -2.9471 -3.7315 4.8739 24 6 0.2234 -2.3568 1.2224 25 1 -0.4851 0.8399 -0.0040 26 1 2.6960 -3.6962 -0.7091 27 1 -0.4345 -5.6682 1.4140 28 1 -1.8746 -2.6337 2.7278 29 1 -2.5636 -5.2450 1.9022 30 1 -1.5145 -5.3686 3.3349 31 1 -4.5373 -6.1749 3.2177 32 1 -3.3929 -6.3752 4.5678 33 1 -5.5460 -4.4931 6.8506 34 1 -3.9985 -5.3675 6.7462 35 1 -4.7094 -2.7528 5.3377 36 1 -3.5650 -2.9532 6.6878 37 1 -0.1461 -1.4068 1.5796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168272949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:43 Heat of formation + Delta-G solvation = -136.941625 kcal Electronic energy + Delta-G solvation = -21572.195190 eV Core-core repulsion = 18034.722257 eV Total energy + Delta-G solvation = -3537.472933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.57310 -41.01846 -39.56536 -37.34320 -36.50273 -35.10076 -33.05134 -31.19441 -30.21944 -28.87656 -27.38479 -26.26668 -24.19733 -23.01350 -22.09999 -21.99154 -19.45045 -18.17115 -17.93360 -17.45121 -17.23503 -16.89015 -16.77560 -16.45096 -16.25126 -16.23192 -15.97376 -15.44337 -14.99370 -14.76770 -14.58968 -14.35736 -13.74512 -13.47144 -13.29144 -12.85935 -12.76966 -12.75707 -12.45602 -12.38442 -12.12863 -11.96586 -11.72027 -11.53359 -11.33660 -11.13564 -10.47529 -10.20147 -9.28943 -8.69426 -8.05407 -6.43088 0.90358 1.08006 1.41178 1.52981 1.56574 2.22211 2.47427 2.64750 2.70958 2.81504 3.60632 3.66779 3.77042 3.87672 3.92976 4.05166 4.14159 4.30999 4.47342 4.50578 4.57727 4.61175 4.72302 4.73626 4.87477 4.88788 4.93990 5.11970 5.25356 5.46432 5.68015 5.82178 5.94765 6.01654 6.08705 6.12355 6.44430 6.81592 6.90883 6.93657 7.10494 8.31261 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016781 B = 0.004406 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.169106 B = 6353.948224 C = 7786.519629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.134 3.866 10 C -0.315 4.315 11 C 0.140 3.860 12 F -0.161 7.161 13 C -0.336 4.336 14 C 0.250 3.750 15 N -0.743 5.743 16 C 0.142 3.858 17 C 0.052 3.948 18 H 0.072 0.928 19 C 0.037 3.963 20 O -0.393 6.393 21 C 0.021 3.979 22 C 0.018 3.982 23 O -0.394 6.394 24 C -0.264 4.264 25 H 0.290 0.710 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.398 0.602 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -4.433 10.604 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.096 0.904 9 C 0.130 3.870 10 C -0.337 4.337 11 C 0.120 3.880 12 F -0.140 7.140 13 C -0.359 4.359 14 C 0.147 3.853 15 N -0.375 5.375 16 C 0.017 3.983 17 C -0.007 4.007 18 H 0.090 0.910 19 C -0.040 4.040 20 O -0.312 6.312 21 C -0.055 4.055 22 C -0.058 4.058 23 O -0.313 6.313 24 C -0.288 4.288 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.142 0.858 28 H 0.232 0.768 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.501 -4.555 10.613 15.610 hybrid contribution 0.436 0.803 -0.205 0.936 sum -10.065 -3.752 10.408 14.957 Atomic orbital electron populations 1.69893 1.08969 1.30624 1.34157 1.26743 0.95496 1.04378 0.90970 0.85148 0.79444 0.76036 0.79025 1.18255 1.18928 1.18732 1.19857 0.98420 0.92315 1.41565 0.90436 1.17394 0.90554 0.91753 0.87276 1.20915 1.07379 0.92160 1.13215 1.17333 0.94823 0.79210 0.96608 1.91332 1.88859 1.45257 1.88559 1.19926 1.04306 0.96983 1.14701 1.17319 0.86536 0.92674 0.88756 1.44308 1.30167 1.08220 1.54782 1.21235 0.92715 0.87463 0.96871 1.22938 0.95784 0.95306 0.86626 0.91042 1.23209 0.91086 0.94934 0.94813 1.88073 1.33623 1.78215 1.31314 1.23430 1.01320 0.93237 0.87518 1.23460 0.90992 0.97223 0.94142 1.88160 1.34241 1.78206 1.30731 1.20702 1.03567 0.95784 1.08759 0.89966 0.88189 0.85790 0.76775 0.90146 0.92271 0.85725 0.91217 0.85441 0.91683 0.92018 0.86103 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.49 10.96 21.82 0.24 -41.25 16 2 C 0.04 2.03 5.14 85.25 0.44 2.46 16 3 Si 0.98 37.57 29.60 68.60 2.03 39.61 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -26.74 9.05 23.46 0.21 -26.53 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.13 7.39 5.57 -21.31 -0.12 7.27 16 10 C -0.32 -16.62 9.76 22.80 0.22 -16.39 16 11 C 0.14 6.83 7.28 22.30 0.16 6.99 16 12 F -0.16 -7.31 17.26 44.97 0.78 -6.53 16 13 C -0.34 -15.22 9.30 22.63 0.21 -15.01 16 14 C 0.25 11.50 6.64 38.16 0.25 11.75 16 15 N -0.74 -27.56 5.63 -339.60 -1.91 -29.47 16 16 C 0.14 4.02 4.60 86.38 0.40 4.42 16 17 C 0.05 1.22 2.93 30.64 0.09 1.31 16 18 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 19 C 0.04 0.71 6.34 72.03 0.46 1.16 16 20 O -0.39 -8.08 10.85 -135.99 -1.48 -9.55 16 21 C 0.02 0.34 7.05 72.03 0.51 0.85 16 22 C 0.02 0.33 7.05 72.03 0.51 0.84 16 23 O -0.39 -10.18 10.25 -135.99 -1.39 -11.57 16 24 C -0.26 -13.82 8.53 22.87 0.20 -13.63 16 25 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 26 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 27 H 0.12 4.89 6.70 -2.91 -0.02 4.87 16 28 H 0.40 14.58 8.37 -92.71 -0.78 13.80 16 29 H 0.08 2.12 7.94 -2.39 -0.02 2.10 16 30 H 0.06 1.72 7.94 -2.38 -0.02 1.70 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 5.91 6.16 -2.91 -0.02 5.90 16 Total: -1.00 -62.41 313.47 2.12 -60.29 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.32 Total: 32.99 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.53 Total: -34.50 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.67 Total: -70.72 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -2.87 Total: -21.13 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 0.78 Total: -6.53 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.61 kcal Total: -62.41 2.12 -60.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168272949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.655 kcal (2) G-P(sol) polarization free energy of solvation -62.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds