Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00502 * 2 1 4 4 C 1.38046 * 120.20891 * 0.23556 * 3 2 1 5 5 C 1.39219 * 119.97333 * 180.27707 * 4 3 2 6 6 N 1.38930 * 119.79072 * 179.76384 * 5 4 3 7 7 C 1.46501 * 119.99579 * 179.72271 * 6 5 4 8 8 C 1.52999 * 109.46779 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46826 * 65.00371 * 8 7 6 10 10 C 1.53005 * 109.46946 * 184.99802 * 8 7 6 11 11 S 1.81398 * 109.47642 * 305.00094 * 8 7 6 12 12 C 1.39725 * 120.40771 * 359.48278 * 5 4 3 13 13 C 1.36215 * 120.42996 * 0.25566 * 12 5 4 14 14 C 1.40860 * 120.01128 * 359.97438 * 13 12 5 15 15 C 1.40965 * 120.20081 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99952 * 204.85722 * 15 14 13 17 17 C 1.39837 * 120.00276 * 24.84859 * 15 14 13 18 18 N 1.30953 * 119.99908 * 17.83212 * 17 15 14 19 19 Si 1.86804 * 120.00106 * 197.83121 * 17 15 14 20 20 H 1.48495 * 109.47321 * 60.00457 * 19 17 15 21 21 H 1.48504 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47030 * 299.99789 * 19 17 15 23 23 H 1.08996 * 109.46746 * 300.00342 * 1 2 3 24 24 H 1.09007 * 109.46667 * 59.99478 * 1 2 3 25 25 H 1.08989 * 109.47557 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.01048 * 0.02562 * 4 3 2 27 27 H 0.97000 * 120.00305 * 359.71898 * 6 5 4 28 28 H 1.09001 * 109.47126 * 60.00027 * 7 6 5 29 29 H 1.09000 * 109.47143 * 299.99990 * 7 6 5 30 30 H 1.09006 * 109.47503 * 59.99923 * 9 8 7 31 31 H 1.09004 * 109.47308 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47496 * 299.99327 * 9 8 7 33 33 H 1.08999 * 109.46650 * 60.00680 * 10 8 7 34 34 H 1.09003 * 109.47072 * 180.02562 * 10 8 7 35 35 H 1.08995 * 109.47011 * 300.00321 * 10 8 7 36 36 H 1.34495 * 102.99728 * 300.00097 * 11 8 7 37 37 H 1.08000 * 119.78010 * 180.27824 * 12 5 4 38 38 H 1.08000 * 119.99656 * 179.97438 * 13 12 5 39 39 H 0.97001 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2975 2.3693 0.0049 5 6 1.9347 3.6071 -0.0010 6 7 1.1787 4.7726 -0.0010 7 6 1.8446 6.0775 -0.0010 8 6 0.7914 7.1874 -0.0016 9 6 -0.0022 7.1380 1.3055 10 6 1.4829 8.5465 -0.1273 11 16 -0.3359 6.9506 -1.4029 12 6 3.3298 3.6843 -0.0009 13 6 4.0836 2.5497 -0.0004 14 6 3.4575 1.2879 0.0007 15 6 4.2337 0.1112 0.0007 16 1 3.8223 -0.8071 -0.3918 17 6 5.5364 0.1328 0.5086 18 7 5.9190 1.1130 1.2881 19 14 6.7307 -1.2366 0.0752 20 1 6.9205 -1.2804 -1.3969 21 1 8.0363 -0.9822 0.7356 22 1 6.1848 -2.5360 0.5429 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 0.2188 2.3170 0.0092 27 1 0.2100 4.7224 -0.0010 28 1 2.4674 6.1676 -0.8910 29 1 2.4674 6.1676 0.8890 30 1 0.6751 7.2804 2.1476 31 1 -0.7523 7.9290 1.3053 32 1 -0.4949 6.1698 1.3951 33 1 2.0483 8.5816 -1.0585 34 1 0.7327 9.3372 -0.1273 35 1 2.1602 8.6887 0.7147 36 1 0.4851 7.0165 -2.4661 37 1 3.8136 4.6499 -0.0009 38 1 5.1615 2.6176 -0.0008 39 1 6.8225 1.1278 1.6408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170306117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -17.329181 kcal Electronic energy + Delta-G solvation = -19840.985538 eV Core-core repulsion = 16874.912566 eV Total energy + Delta-G solvation = -2966.072972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.76716 -37.52155 -35.91750 -34.06791 -32.17991 -29.01959 -28.80599 -27.60718 -26.44465 -25.78764 -23.72175 -21.35018 -20.58627 -19.91204 -17.31186 -17.29833 -16.70953 -15.99766 -15.04772 -14.95934 -14.58071 -14.53731 -14.34241 -13.94318 -13.51283 -13.27578 -13.02083 -12.66075 -12.39839 -12.14618 -11.85409 -11.69478 -11.49623 -11.42107 -11.19474 -11.05622 -10.95930 -10.60973 -10.42867 -10.28059 -10.06383 -9.66615 -9.49556 -9.08083 -8.39220 -8.06911 -7.08891 -6.58836 -6.35699 -3.89520 1.55742 2.66451 2.95408 3.04401 3.19250 3.23779 3.36630 4.12671 4.17220 4.48480 4.58924 4.68786 4.80339 4.90420 5.36233 5.42735 5.59777 5.62023 5.70979 5.81109 5.83397 5.83930 5.85988 5.92392 6.03644 6.05087 6.22873 6.41373 6.79370 7.02441 7.16479 7.37699 7.54648 7.78953 7.99630 8.16348 8.42629 8.57989 8.71950 8.88569 9.07736 9.25833 10.45684 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.004334 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.705110 B = 6458.333392 C = 7328.141045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.050 3.950 4 C -0.241 4.241 5 C 0.129 3.871 6 N -0.752 5.752 7 C 0.146 3.854 8 C -0.022 4.022 9 C -0.126 4.126 10 C -0.142 4.142 11 S -0.238 6.238 12 C -0.193 4.193 13 C -0.103 4.103 14 C 0.061 3.939 15 C -0.451 4.451 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.814 5.814 19 Si 0.904 3.096 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.391 0.609 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 11.107 -0.929 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.005 3.995 4 C -0.264 4.264 5 C 0.031 3.969 6 N -0.390 5.390 7 C 0.018 3.982 8 C -0.133 4.133 9 C -0.184 4.184 10 C -0.201 4.201 11 S -0.086 6.086 12 C -0.215 4.215 13 C -0.123 4.123 14 C 0.057 3.943 15 C -0.482 4.482 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.442 5.442 19 Si 0.729 3.271 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.227 0.773 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.562 10.971 -1.313 13.979 hybrid contribution 1.320 -0.228 -0.283 1.369 sum -7.242 10.743 -1.595 13.054 Atomic orbital electron populations 1.22716 0.81870 1.01581 0.99905 1.85988 1.18131 1.28298 1.90008 1.18974 0.92158 0.82128 1.06249 1.20046 0.97167 0.91404 1.17795 1.17025 0.90320 0.84715 1.04834 1.43974 1.06890 1.01339 1.86752 1.21201 0.92956 0.83052 1.00989 1.22843 0.96788 0.98511 0.95159 1.21649 0.99927 1.03316 0.93555 1.22147 1.00824 0.94601 1.02572 1.87199 1.19218 1.97065 1.05093 1.19996 0.91351 0.97637 1.12484 1.20683 0.99490 0.90281 1.01842 1.16911 0.87086 0.94025 0.96253 1.19172 0.96761 0.96497 1.35760 0.90564 1.25755 0.98805 0.96614 0.93011 1.69862 1.18939 1.31387 1.24001 0.86449 0.79147 0.81840 0.79663 1.19193 1.20714 1.19286 0.94177 0.94273 0.90170 0.88520 0.77332 0.93767 0.91923 0.90644 0.91594 0.91160 0.92623 0.90897 0.91006 0.94843 0.89476 0.85776 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.38 9.78 -18.69 -0.18 -7.56 16 3 C 0.05 1.27 6.71 -38.42 -0.26 1.01 16 4 C -0.24 -5.43 8.86 -39.29 -0.35 -5.78 16 5 C 0.13 2.78 6.66 -83.72 -0.56 2.23 16 6 N -0.75 -12.80 5.09 -58.53 -0.30 -13.10 16 7 C 0.15 2.07 3.78 -4.04 -0.02 2.06 16 8 C -0.02 -0.25 0.88 -90.62 -0.08 -0.33 16 9 C -0.13 -1.24 8.35 37.16 0.31 -0.93 16 10 C -0.14 -1.26 8.48 37.16 0.32 -0.95 16 11 S -0.24 -2.88 23.48 -107.50 -2.52 -5.40 16 12 C -0.19 -4.47 9.22 -39.75 -0.37 -4.83 16 13 C -0.10 -2.69 8.62 -39.32 -0.34 -3.03 16 14 C 0.06 1.67 5.58 -106.64 -0.60 1.07 16 15 C -0.45 -12.63 8.70 -37.95 -0.33 -12.96 16 16 H 0.08 2.13 7.65 -52.48 -0.40 1.73 16 17 C 0.07 1.90 5.13 -17.33 -0.09 1.81 16 18 N -0.81 -21.83 10.97 55.54 0.61 -21.23 16 19 Si 0.90 19.79 29.60 -169.99 -5.03 14.76 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 24 H 0.04 0.64 7.67 -51.92 -0.40 0.24 16 25 H 0.08 1.17 8.14 -51.94 -0.42 0.74 16 26 H 0.10 1.93 6.29 -52.49 -0.33 1.60 16 27 H 0.39 6.22 6.88 -40.82 -0.28 5.94 16 28 H 0.04 0.67 7.92 -51.93 -0.41 0.26 16 29 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.77 7.18 -51.93 -0.37 0.40 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.11 9.07 97.61 0.89 2.00 16 37 H 0.09 1.84 6.67 -52.49 -0.35 1.49 16 38 H 0.12 3.36 6.17 -52.49 -0.32 3.04 16 39 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -29.27 329.28 -8.29 -37.56 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.46 Total: 9.02 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.36 Total: -19.01 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.31 Total: -34.32 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.18 Total: -7.56 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.52 Total: -5.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.27 -8.29 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.229 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds