Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 117.00502 * 2 1 4 4 C 1.38046 * 120.20891 * 0.23556 * 3 2 1 5 5 C 1.39219 * 119.97333 * 180.27707 * 4 3 2 6 6 N 1.38930 * 119.79072 * 179.76384 * 5 4 3 7 7 C 1.46501 * 119.99579 * 179.72271 * 6 5 4 8 8 C 1.52999 * 109.46779 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46826 * 65.00371 * 8 7 6 10 10 C 1.53005 * 109.46946 * 184.99802 * 8 7 6 11 11 S 1.81398 * 109.47642 * 305.00094 * 8 7 6 12 12 C 1.39725 * 120.40771 * 359.48278 * 5 4 3 13 13 C 1.36215 * 120.42996 * 0.25566 * 12 5 4 14 14 C 1.40860 * 120.01128 * 359.97438 * 13 12 5 15 15 C 1.40965 * 120.20081 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99952 * 204.85722 * 15 14 13 17 17 C 1.39837 * 120.00276 * 24.84859 * 15 14 13 18 18 N 1.30953 * 119.99908 * 17.83212 * 17 15 14 19 19 Si 1.86804 * 120.00106 * 197.83121 * 17 15 14 20 20 H 1.48495 * 109.47321 * 60.00457 * 19 17 15 21 21 H 1.48504 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47030 * 299.99789 * 19 17 15 23 23 H 1.08996 * 109.46746 * 300.00342 * 1 2 3 24 24 H 1.09007 * 109.46667 * 59.99478 * 1 2 3 25 25 H 1.08989 * 109.47557 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.01048 * 0.02562 * 4 3 2 27 27 H 0.97000 * 120.00305 * 359.71898 * 6 5 4 28 28 H 1.09001 * 109.47126 * 60.00027 * 7 6 5 29 29 H 1.09000 * 109.47143 * 299.99990 * 7 6 5 30 30 H 1.09006 * 109.47503 * 59.99923 * 9 8 7 31 31 H 1.09004 * 109.47308 * 179.97438 * 9 8 7 32 32 H 1.09001 * 109.47496 * 299.99327 * 9 8 7 33 33 H 1.08999 * 109.46650 * 60.00680 * 10 8 7 34 34 H 1.09003 * 109.47072 * 180.02562 * 10 8 7 35 35 H 1.08995 * 109.47011 * 300.00321 * 10 8 7 36 36 H 1.34495 * 102.99728 * 300.00097 * 11 8 7 37 37 H 1.08000 * 119.78010 * 180.27824 * 12 5 4 38 38 H 1.08000 * 119.99656 * 179.97438 * 13 12 5 39 39 H 0.97001 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2975 2.3693 0.0049 5 6 1.9347 3.6071 -0.0010 6 7 1.1787 4.7726 -0.0010 7 6 1.8446 6.0775 -0.0010 8 6 0.7914 7.1874 -0.0016 9 6 -0.0022 7.1380 1.3055 10 6 1.4829 8.5465 -0.1273 11 16 -0.3359 6.9506 -1.4029 12 6 3.3298 3.6843 -0.0009 13 6 4.0836 2.5497 -0.0004 14 6 3.4575 1.2879 0.0007 15 6 4.2337 0.1112 0.0007 16 1 3.8223 -0.8071 -0.3918 17 6 5.5364 0.1328 0.5086 18 7 5.9190 1.1130 1.2881 19 14 6.7307 -1.2366 0.0752 20 1 6.9205 -1.2804 -1.3969 21 1 8.0363 -0.9822 0.7356 22 1 6.1848 -2.5360 0.5429 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 0.2188 2.3170 0.0092 27 1 0.2100 4.7224 -0.0010 28 1 2.4674 6.1676 -0.8910 29 1 2.4674 6.1676 0.8890 30 1 0.6751 7.2804 2.1476 31 1 -0.7523 7.9290 1.3053 32 1 -0.4949 6.1698 1.3951 33 1 2.0483 8.5816 -1.0585 34 1 0.7327 9.3372 -0.1273 35 1 2.1602 8.6887 0.7147 36 1 0.4851 7.0165 -2.4661 37 1 3.8136 4.6499 -0.0009 38 1 5.1615 2.6176 -0.0008 39 1 6.8225 1.1278 1.6408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170306117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -34.377614 kcal Electronic energy + Delta-G solvation = -19841.724814 eV Core-core repulsion = 16874.912566 eV Total energy + Delta-G solvation = -2966.812247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52668 -38.90056 -37.45999 -35.74620 -33.82435 -30.73488 -30.62969 -28.37455 -28.03187 -27.19572 -25.43275 -22.90438 -22.11002 -21.38778 -19.21845 -18.45118 -18.25605 -17.42732 -16.75958 -16.23169 -16.17208 -16.08345 -15.67829 -15.57320 -14.73760 -14.57699 -14.35429 -14.01722 -13.94782 -13.47016 -13.13169 -13.08731 -12.77810 -12.70242 -12.68431 -12.45295 -12.24175 -12.19809 -12.07328 -11.77111 -11.53966 -11.37732 -11.05555 -10.95618 -10.15993 -9.05651 -8.91836 -8.49360 -8.15972 -5.88803 0.62813 1.12564 1.13519 1.40638 1.51420 1.58888 1.70515 2.31313 2.77737 2.86855 3.00289 3.52796 3.76780 3.81129 4.01477 4.38951 4.50116 4.51719 4.52466 4.56863 4.67462 4.74552 4.76677 4.77877 4.85109 4.92195 4.99393 5.16121 5.26080 5.27537 5.32683 5.46113 5.62877 5.89608 6.08691 6.28922 6.52194 6.81661 6.94141 7.09779 7.18254 7.39445 8.54675 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.004334 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.705110 B = 6458.333392 C = 7328.141045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C 0.046 3.954 4 C -0.250 4.250 5 C 0.154 3.846 6 N -0.740 5.740 7 C 0.140 3.860 8 C -0.012 4.012 9 C -0.126 4.126 10 C -0.140 4.140 11 S -0.245 6.245 12 C -0.206 4.206 13 C -0.114 4.114 14 C 0.012 3.988 15 C -0.490 4.490 16 H 0.060 0.940 17 C 0.031 3.969 18 N -0.846 5.846 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.266 1.266 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.110 0.890 26 H 0.125 0.875 27 H 0.400 0.600 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 12.486 -0.751 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.001 3.999 4 C -0.273 4.273 5 C 0.053 3.947 6 N -0.376 5.376 7 C 0.013 3.987 8 C -0.123 4.123 9 C -0.184 4.184 10 C -0.199 4.199 11 S -0.093 6.093 12 C -0.229 4.229 13 C -0.135 4.135 14 C 0.009 3.991 15 C -0.522 4.522 16 H 0.078 0.922 17 C -0.179 4.179 18 N -0.475 5.475 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.191 1.191 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.237 0.763 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.964 12.392 -1.138 15.941 hybrid contribution 1.511 -0.520 -0.346 1.635 sum -8.452 11.872 -1.484 14.648 Atomic orbital electron populations 1.23073 0.78640 1.04084 1.00982 1.85936 1.21538 1.28028 1.89869 1.19167 0.91987 0.83552 1.05213 1.20302 0.98523 0.90810 1.17711 1.17146 0.90114 0.86109 1.01321 1.44038 1.07222 1.01151 1.85168 1.21387 0.93974 0.82592 1.00723 1.22852 0.95901 0.98282 0.95260 1.21684 1.00354 1.03384 0.92978 1.22150 1.01294 0.93448 1.02976 1.87261 1.19534 1.97112 1.05361 1.20126 0.92192 0.97516 1.13043 1.20609 0.98938 0.91134 1.02805 1.17255 0.88704 0.94466 0.98720 1.19259 0.98508 0.96363 1.38033 0.92173 1.26492 0.99855 0.99182 0.92397 1.69916 1.19552 1.33175 1.24884 0.85406 0.77150 0.78624 0.79353 1.18946 1.19245 1.19076 0.93059 0.92946 0.87178 0.85678 0.76275 0.94468 0.91650 0.89662 0.89851 0.92255 0.92960 0.89372 0.89754 0.95421 0.87607 0.87663 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.81 113.37 1.11 2.02 16 2 O -0.34 -16.25 9.78 -89.80 -0.88 -17.13 16 3 C 0.05 2.38 6.71 23.02 0.15 2.54 16 4 C -0.25 -11.01 8.86 22.46 0.20 -10.81 16 5 C 0.15 6.46 6.66 38.61 0.26 6.71 16 6 N -0.74 -23.54 5.09 -339.09 -1.73 -25.27 16 7 C 0.14 3.67 3.78 86.38 0.33 4.00 16 8 C -0.01 -0.24 0.88 -10.79 -0.01 -0.25 16 9 C -0.13 -2.07 8.35 71.98 0.60 -1.47 16 10 C -0.14 -2.05 8.48 71.98 0.61 -1.44 16 11 S -0.25 -5.36 23.48 -56.49 -1.33 -6.69 16 12 C -0.21 -9.60 9.22 22.16 0.20 -9.39 16 13 C -0.11 -6.22 8.62 22.44 0.19 -6.03 16 14 C 0.01 0.67 5.58 -21.17 -0.12 0.55 16 15 C -0.49 -28.81 8.70 23.33 0.20 -28.60 16 16 H 0.06 3.57 7.65 -2.91 -0.02 3.54 16 17 C 0.03 1.71 5.13 85.21 0.44 2.14 16 18 N -0.85 -47.07 10.97 21.81 0.24 -46.83 16 19 Si 0.97 41.81 29.60 68.60 2.03 43.84 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H 0.05 1.58 7.65 -2.39 -0.02 1.56 16 24 H 0.05 1.60 7.67 -2.38 -0.02 1.58 16 25 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.13 4.68 6.29 -2.91 -0.02 4.66 16 27 H 0.40 11.61 6.88 -92.71 -0.64 10.97 16 28 H 0.04 1.06 7.92 -2.39 -0.02 1.04 16 29 H 0.07 1.74 7.92 -2.39 -0.02 1.72 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 1.12 7.18 -2.39 -0.02 1.10 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.93 9.07 73.35 0.67 2.60 16 37 H 0.11 4.41 6.67 -2.91 -0.02 4.39 16 38 H 0.11 6.00 6.17 -2.91 -0.02 5.99 16 39 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 Total: -1.00 -65.92 329.28 3.60 -62.31 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 1.09 Total: 29.80 kcal Atomic # 6 Polarization: -44.20 SS G_CDS: 4.17 Total: -40.03 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.49 Total: -72.10 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.88 Total: -17.13 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -1.33 Total: -6.69 kcal Total: -65.92 3.60 -62.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.936 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds