Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35961 * 116.99810 * 2 1 4 4 C 1.39410 * 119.82145 * 359.97438 * 3 2 1 5 5 C 1.38098 * 120.56933 * 180.02562 * 4 3 2 6 6 C 1.38711 * 120.20122 * 0.02562 * 5 4 3 7 7 N 1.38854 * 120.18256 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99811 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46980 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46892 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47050 * 299.99855 * 9 8 7 12 12 S 1.81398 * 109.47378 * 59.99878 * 9 8 7 13 13 C 1.41539 * 119.64176 * 359.97438 * 6 5 4 14 14 C 1.41026 * 120.28526 * 180.02562 * 13 6 5 15 15 H 1.08002 * 119.99186 * 329.46306 * 14 13 6 16 16 C 1.39896 * 120.00317 * 149.73659 * 14 13 6 17 17 N 1.30892 * 119.99979 * 162.22106 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 342.21922 * 16 14 13 19 19 H 1.48494 * 109.46921 * 95.38004 * 18 16 14 20 20 H 1.48495 * 109.47247 * 215.37919 * 18 16 14 21 21 H 1.48502 * 109.47067 * 335.38290 * 18 16 14 22 22 C 1.37844 * 119.81812 * 180.30465 * 3 2 1 23 23 H 1.09004 * 109.46813 * 300.00138 * 1 2 3 24 24 H 1.08997 * 109.47249 * 60.00502 * 1 2 3 25 25 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.71653 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.90096 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00708 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46868 * 300.00131 * 8 7 6 30 30 H 1.08997 * 109.46835 * 60.00267 * 8 7 6 31 31 H 1.09004 * 109.47054 * 59.99767 * 10 9 8 32 32 H 1.09004 * 109.46949 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.46969 * 299.99868 * 10 9 8 34 34 H 1.09002 * 109.47273 * 60.00020 * 11 9 8 35 35 H 1.09000 * 109.47017 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47062 * 300.00335 * 11 9 8 37 37 H 1.34499 * 102.99772 * 60.00050 * 12 9 8 38 38 H 0.97000 * 120.00380 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.10677 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3782 -0.0005 5 6 1.8941 3.6168 -0.0011 6 6 3.2779 3.7124 -0.0016 7 7 3.8916 4.9579 -0.0016 8 6 3.0773 6.1758 -0.0016 9 6 3.9929 7.4016 -0.0023 10 6 3.1425 8.6734 -0.0029 11 6 4.8764 7.3789 1.2467 12 16 5.0394 7.3740 -1.4837 13 6 4.0610 2.5334 -0.0011 14 6 5.4689 2.6147 -0.0011 15 1 5.9614 3.4500 -0.4767 16 6 6.2277 1.6107 0.6100 17 7 7.4990 1.4860 0.3247 18 14 5.4264 0.4481 1.8330 19 1 5.0101 -0.7946 1.1349 20 1 6.3971 0.1120 2.9054 21 1 4.2352 1.1028 2.4309 22 6 3.4230 1.2793 -0.0064 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2053 2.3130 -0.0005 27 1 1.2925 4.5138 -0.0011 28 1 4.8596 5.0218 -0.0016 29 1 2.4482 6.1922 -0.8916 30 1 2.4482 6.1922 0.8884 31 1 2.5133 8.6903 0.8871 32 1 3.7948 9.5467 -0.0029 33 1 2.5134 8.6893 -0.8929 34 1 5.4823 6.4728 1.2467 35 1 5.5284 8.2524 1.2464 36 1 4.2476 7.3955 2.1369 37 1 4.1440 7.3971 -2.4871 38 1 8.0253 0.7901 0.7486 39 1 4.0100 0.3728 -0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170306867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -19.395814 kcal Electronic energy + Delta-G solvation = -20181.387381 eV Core-core repulsion = 17215.224793 eV Total energy + Delta-G solvation = -2966.162588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.97304 -37.66642 -36.13245 -33.47842 -32.66654 -30.40812 -28.43203 -27.46971 -26.50224 -25.16771 -24.49103 -21.62382 -20.31841 -20.01421 -17.66719 -17.16616 -16.64136 -16.00942 -15.64896 -14.92647 -14.82751 -14.59531 -14.45544 -13.78741 -13.59111 -13.25535 -12.92867 -12.61998 -12.32217 -12.24669 -11.95933 -11.78816 -11.64925 -11.48578 -11.26860 -11.07183 -11.02306 -10.73294 -10.55516 -10.30830 -9.95194 -9.82742 -9.52653 -9.02244 -8.50884 -7.86137 -7.61327 -6.84397 -6.17343 -4.26951 1.72607 2.64540 2.83878 2.88909 3.26687 3.32396 3.44736 4.11413 4.22354 4.34926 4.60008 4.62003 4.85537 5.03187 5.41055 5.47970 5.52873 5.60681 5.67109 5.75091 5.76066 5.84475 5.87374 5.88954 5.95372 6.00929 6.18618 6.28688 6.62992 6.69635 7.10384 7.19888 7.29269 7.44384 7.67867 7.91737 8.21586 8.35986 8.55912 8.79956 8.85949 8.99246 10.17653 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.006398 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.810757 B = 4374.990976 C = 5739.076397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.333 6.333 3 C 0.113 3.887 4 C -0.277 4.277 5 C -0.147 4.147 6 C 0.112 3.888 7 N -0.738 5.738 8 C 0.144 3.856 9 C -0.024 4.024 10 C -0.141 4.141 11 C -0.128 4.128 12 S -0.227 6.227 13 C 0.082 3.918 14 C -0.444 4.444 15 H 0.093 0.907 16 C 0.087 3.913 17 N -0.811 5.811 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.295 1.295 21 H -0.246 1.246 22 C -0.244 4.244 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.406 0.594 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.283 0.717 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 9.164 1.631 12.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.248 6.248 3 C 0.068 3.932 4 C -0.298 4.298 5 C -0.172 4.172 6 C 0.012 3.988 7 N -0.376 5.376 8 C 0.016 3.984 9 C -0.135 4.135 10 C -0.200 4.200 11 C -0.187 4.187 12 S -0.075 6.075 13 C 0.077 3.923 14 C -0.473 4.473 15 H 0.111 0.889 16 C -0.131 4.131 17 N -0.436 5.436 18 Si 0.736 3.264 19 H -0.196 1.196 20 H -0.223 1.223 21 H -0.169 1.169 22 C -0.265 4.265 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.244 0.756 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.029 8.995 1.059 11.465 hybrid contribution -1.581 -0.411 0.359 1.673 sum -8.610 8.584 1.418 12.241 Atomic orbital electron populations 1.22750 0.80701 1.01874 1.00530 1.85991 1.19568 1.29053 1.90161 1.18612 0.91890 0.82663 0.99986 1.20146 0.97107 0.91912 1.20630 1.19808 0.92205 0.95821 1.09323 1.17748 0.90870 0.85156 1.04988 1.44031 1.08011 1.00599 1.84939 1.21222 0.92589 0.84201 1.00387 1.22813 0.97485 0.98188 0.94980 1.22146 0.99515 0.95919 1.02416 1.21662 0.99309 1.03693 0.94028 1.87472 1.17213 1.98615 1.04179 1.17110 0.93250 0.88724 0.93188 1.19132 0.89173 1.07594 1.31428 0.88888 1.26062 0.94588 0.96194 0.96266 1.69724 1.08201 1.29793 1.35866 0.86314 0.79515 0.80613 0.79915 1.19613 1.22265 1.16895 1.20023 0.90438 0.97241 1.18800 0.93705 0.93655 0.89921 0.88531 0.88913 0.75559 0.94088 0.92336 0.91219 0.90886 0.92800 0.90510 0.91604 0.90814 0.95486 0.90642 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.81 101.05 0.99 1.58 16 2 O -0.33 -7.20 10.49 -19.62 -0.21 -7.40 16 3 C 0.11 2.67 6.67 -39.29 -0.26 2.41 16 4 C -0.28 -5.98 9.03 -39.20 -0.35 -6.33 16 5 C -0.15 -3.13 9.28 -39.46 -0.37 -3.50 16 6 C 0.11 2.54 6.68 -83.25 -0.56 1.98 16 7 N -0.74 -14.25 5.05 -58.17 -0.29 -14.54 16 8 C 0.14 2.17 3.79 -4.04 -0.02 2.16 16 9 C -0.02 -0.30 0.88 -90.62 -0.08 -0.38 16 10 C -0.14 -1.36 8.48 37.16 0.32 -1.04 16 11 C -0.13 -1.55 8.31 37.16 0.31 -1.24 16 12 S -0.23 -3.29 23.80 -107.50 -2.56 -5.84 16 13 C 0.08 2.09 5.10 -106.65 -0.54 1.55 16 14 C -0.44 -11.76 8.90 -37.91 -0.34 -12.10 16 15 H 0.09 2.54 7.03 -52.49 -0.37 2.17 16 16 C 0.09 2.30 5.41 -17.33 -0.09 2.21 16 17 N -0.81 -21.70 13.93 55.55 0.77 -20.93 16 18 Si 0.91 21.71 24.52 -169.99 -4.17 17.54 16 19 H -0.27 -6.48 6.72 56.52 0.38 -6.11 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.25 -6.06 6.86 56.52 0.39 -5.68 16 22 C -0.24 -6.24 7.08 -38.79 -0.27 -6.51 16 23 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 24 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.10 1.82 6.26 -52.49 -0.33 1.49 16 27 H 0.09 1.73 6.71 -52.48 -0.35 1.37 16 28 H 0.41 8.17 5.12 -40.82 -0.21 7.96 16 29 H 0.04 0.63 7.94 -51.93 -0.41 0.22 16 30 H 0.06 0.85 7.94 -51.93 -0.41 0.43 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.10 6.86 -51.93 -0.36 0.75 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.16 9.07 97.61 0.89 2.04 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.11 2.84 4.80 -52.49 -0.25 2.58 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -28.62 322.07 -7.18 -35.80 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.31 Total: 9.77 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.27 Total: -19.24 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.48 Total: -35.47 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.21 Total: -7.40 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.17 Total: 17.54 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.56 Total: -5.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.62 -7.18 -35.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.400 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds