Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35961 * 116.99810 * 2 1 4 4 C 1.39410 * 119.82145 * 359.97438 * 3 2 1 5 5 C 1.38098 * 120.56933 * 180.02562 * 4 3 2 6 6 C 1.38711 * 120.20122 * 0.02562 * 5 4 3 7 7 N 1.38854 * 120.18256 * 180.02562 * 6 5 4 8 8 C 1.46507 * 119.99811 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46980 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46892 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47050 * 299.99855 * 9 8 7 12 12 S 1.81398 * 109.47378 * 59.99878 * 9 8 7 13 13 C 1.41539 * 119.64176 * 359.97438 * 6 5 4 14 14 C 1.41026 * 120.28526 * 180.02562 * 13 6 5 15 15 H 1.08002 * 119.99186 * 329.46306 * 14 13 6 16 16 C 1.39896 * 120.00317 * 149.73659 * 14 13 6 17 17 N 1.30892 * 119.99979 * 162.22106 * 16 14 13 18 18 Si 1.86802 * 120.00103 * 342.21922 * 16 14 13 19 19 H 1.48494 * 109.46921 * 95.38004 * 18 16 14 20 20 H 1.48495 * 109.47247 * 215.37919 * 18 16 14 21 21 H 1.48502 * 109.47067 * 335.38290 * 18 16 14 22 22 C 1.37844 * 119.81812 * 180.30465 * 3 2 1 23 23 H 1.09004 * 109.46813 * 300.00138 * 1 2 3 24 24 H 1.08997 * 109.47249 * 60.00502 * 1 2 3 25 25 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.71653 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.90096 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00708 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46868 * 300.00131 * 8 7 6 30 30 H 1.08997 * 109.46835 * 60.00267 * 8 7 6 31 31 H 1.09004 * 109.47054 * 59.99767 * 10 9 8 32 32 H 1.09004 * 109.46949 * 179.97438 * 10 9 8 33 33 H 1.08999 * 109.46969 * 299.99868 * 10 9 8 34 34 H 1.09002 * 109.47273 * 60.00020 * 11 9 8 35 35 H 1.09000 * 109.47017 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47062 * 300.00335 * 11 9 8 37 37 H 1.34499 * 102.99772 * 60.00050 * 12 9 8 38 38 H 0.97000 * 120.00380 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.10677 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2833 2.3782 -0.0005 5 6 1.8941 3.6168 -0.0011 6 6 3.2779 3.7124 -0.0016 7 7 3.8916 4.9579 -0.0016 8 6 3.0773 6.1758 -0.0016 9 6 3.9929 7.4016 -0.0023 10 6 3.1425 8.6734 -0.0029 11 6 4.8764 7.3789 1.2467 12 16 5.0394 7.3740 -1.4837 13 6 4.0610 2.5334 -0.0011 14 6 5.4689 2.6147 -0.0011 15 1 5.9614 3.4500 -0.4767 16 6 6.2277 1.6107 0.6100 17 7 7.4990 1.4860 0.3247 18 14 5.4264 0.4481 1.8330 19 1 5.0101 -0.7946 1.1349 20 1 6.3971 0.1120 2.9054 21 1 4.2352 1.1028 2.4309 22 6 3.4230 1.2793 -0.0064 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2053 2.3130 -0.0005 27 1 1.2925 4.5138 -0.0011 28 1 4.8596 5.0218 -0.0016 29 1 2.4482 6.1922 -0.8916 30 1 2.4482 6.1922 0.8884 31 1 2.5133 8.6903 0.8871 32 1 3.7948 9.5467 -0.0029 33 1 2.5134 8.6893 -0.8929 34 1 5.4823 6.4728 1.2467 35 1 5.5284 8.2524 1.2464 36 1 4.2476 7.3955 2.1369 37 1 4.1440 7.3971 -2.4871 38 1 8.0253 0.7901 0.7486 39 1 4.0100 0.3728 -0.0109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170306867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -37.064684 kcal Electronic energy + Delta-G solvation = -20182.153560 eV Core-core repulsion = 17215.224793 eV Total energy + Delta-G solvation = -2966.928767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65141 -39.10396 -37.52270 -35.34153 -34.13410 -32.25661 -29.95367 -28.37415 -27.87696 -26.82107 -26.04030 -23.24644 -21.71298 -21.53498 -19.48978 -18.46871 -18.22866 -17.57832 -17.10123 -16.53704 -16.32257 -16.07024 -15.81213 -15.21672 -15.00835 -14.75625 -14.22409 -14.03843 -13.89414 -13.68667 -13.38762 -13.18356 -12.98328 -12.66505 -12.64375 -12.63407 -12.24186 -12.21798 -12.15385 -11.85962 -11.74315 -11.36612 -11.02777 -10.87990 -10.09010 -9.48478 -9.01794 -8.81365 -7.88647 -6.21519 0.65293 0.79674 1.06935 1.32007 1.42656 1.50821 1.74275 2.18243 2.65616 2.77992 2.97223 3.56188 3.58409 3.83202 4.02656 4.24445 4.45314 4.49542 4.49634 4.54718 4.64710 4.74892 4.76574 4.81524 4.84144 4.85522 4.91051 4.94279 5.18945 5.29556 5.31481 5.37254 5.53598 5.66387 5.87512 6.11972 6.25660 6.54734 6.83358 6.91695 7.13758 7.26628 8.26477 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.006398 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.810757 B = 4374.990976 C = 5739.076397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.094 3.906 4 C -0.256 4.256 5 C -0.150 4.150 6 C 0.112 3.888 7 N -0.739 5.739 8 C 0.139 3.861 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.128 4.128 12 S -0.266 6.266 13 C 0.055 3.945 14 C -0.464 4.464 15 H 0.069 0.931 16 C 0.056 3.944 17 N -0.851 5.851 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.280 1.280 21 H -0.259 1.259 22 C -0.260 4.260 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.399 0.601 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.289 0.711 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 10.515 2.452 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.049 3.951 4 C -0.276 4.276 5 C -0.174 4.174 6 C 0.010 3.990 7 N -0.374 5.374 8 C 0.013 3.987 9 C -0.121 4.121 10 C -0.194 4.194 11 C -0.186 4.186 12 S -0.113 6.113 13 C 0.050 3.950 14 C -0.495 4.495 15 H 0.087 0.913 16 C -0.158 4.158 17 N -0.478 5.478 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.183 1.183 22 C -0.282 4.282 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.132 0.868 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.236 0.764 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.310 10.372 1.882 14.745 hybrid contribution -0.835 -0.771 0.045 1.138 sum -11.145 9.601 1.927 14.836 Atomic orbital electron populations 1.23149 0.77504 1.04522 1.01651 1.85955 1.22862 1.28222 1.90062 1.18695 0.91517 0.84262 1.00664 1.20615 0.98874 0.91135 1.16974 1.20197 0.91725 0.97204 1.08263 1.17949 0.91633 0.85614 1.03792 1.44219 1.08159 1.01029 1.83982 1.21481 0.92783 0.83305 1.01161 1.22883 0.97014 0.98644 0.93571 1.22123 0.99421 0.94251 1.03571 1.21678 0.99521 1.02899 0.94531 1.87685 1.18981 1.98652 1.05992 1.17255 0.93040 0.90043 0.94679 1.19062 0.90064 1.07478 1.32857 0.91251 1.26528 0.94885 0.97202 0.97231 1.69748 1.09034 1.31321 1.37679 0.85578 0.78471 0.78831 0.78703 1.20408 1.20646 1.18283 1.20100 0.91855 0.96693 1.19506 0.92435 0.92399 0.86833 0.84977 0.85442 0.76381 0.93778 0.90532 0.89133 0.89811 0.92476 0.93452 0.90146 0.88951 0.94916 0.90044 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.81 113.37 1.11 1.84 16 2 O -0.36 -14.73 10.49 -93.12 -0.98 -15.71 16 3 C 0.09 4.30 6.67 22.46 0.15 4.45 16 4 C -0.26 -10.15 9.03 22.52 0.20 -9.95 16 5 C -0.15 -5.88 9.28 22.35 0.21 -5.67 16 6 C 0.11 4.97 6.68 38.96 0.26 5.23 16 7 N -0.74 -28.05 5.05 -337.96 -1.71 -29.75 16 8 C 0.14 3.85 3.79 86.38 0.33 4.17 16 9 C -0.01 -0.25 0.88 -10.79 -0.01 -0.26 16 10 C -0.13 -2.12 8.48 71.98 0.61 -1.51 16 11 C -0.13 -2.88 8.31 71.98 0.60 -2.28 16 12 S -0.27 -7.55 23.80 -56.49 -1.34 -8.89 16 13 C 0.05 2.84 5.10 -21.18 -0.11 2.73 16 14 C -0.46 -25.79 8.90 23.36 0.21 -25.58 16 15 H 0.07 4.05 7.03 -2.91 -0.02 4.03 16 16 C 0.06 3.05 5.41 85.23 0.46 3.52 16 17 N -0.85 -47.63 13.93 21.82 0.30 -47.32 16 18 Si 0.96 46.36 24.52 68.60 1.68 48.05 16 19 H -0.28 -13.56 6.72 99.48 0.67 -12.89 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.26 -12.88 6.86 99.48 0.68 -12.20 16 22 C -0.26 -13.49 7.08 22.78 0.16 -13.33 16 23 H 0.06 1.45 7.65 -2.38 -0.02 1.43 16 24 H 0.06 1.46 7.65 -2.39 -0.02 1.44 16 25 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.13 4.27 6.26 -2.91 -0.02 4.25 16 27 H 0.13 4.11 6.71 -2.91 -0.02 4.09 16 28 H 0.40 16.46 5.12 -92.71 -0.47 15.99 16 29 H 0.04 1.22 7.94 -2.39 -0.02 1.20 16 30 H 0.08 1.90 7.94 -2.39 -0.02 1.88 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.36 6.86 -2.39 -0.02 1.34 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.09 2.41 9.07 73.35 0.67 3.07 16 38 H 0.29 14.78 8.30 -92.71 -0.77 14.02 16 39 H 0.09 4.85 4.80 -2.91 -0.01 4.83 16 Total: -1.00 -64.24 322.07 3.34 -60.90 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 1.20 Total: 29.37 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.18 Total: -36.64 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -1.40 Total: -77.08 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.98 Total: -15.71 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.68 Total: 48.05 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.34 Total: -8.89 kcal Total: -64.24 3.34 -60.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170306867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.839 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds