Wall clock time and date at job start Tue Mar 31 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48489 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46839 * 300.00089 * 3 2 1 6 6 H 1.48503 * 109.46838 * 59.99686 * 3 2 1 7 7 C 1.39925 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99861 * 193.17163 * 7 2 1 9 9 C 1.41406 * 120.00119 * 13.17905 * 7 2 1 10 10 C 1.40796 * 120.20373 * 205.69801 * 9 7 2 11 11 C 1.37652 * 119.89796 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32767 * 359.73110 * 11 10 9 13 13 C 1.39314 * 120.41767 * 0.54844 * 12 11 10 14 14 N 1.39696 * 119.95459 * 179.72433 * 13 12 11 15 15 C 1.39978 * 119.99413 * 7.70520 * 14 13 12 16 16 C 1.38561 * 119.94179 * 253.84692 * 15 14 13 17 17 C 1.38201 * 120.26628 * 180.02562 * 16 15 14 18 18 C 1.38371 * 119.82591 * 359.89589 * 17 16 15 19 19 C 1.37881 * 120.11319 * 359.94759 * 18 17 16 20 20 C 1.38674 * 120.83643 * 0.33396 * 19 18 17 21 21 O 1.36475 * 111.38074 * 179.52909 * 20 19 18 22 22 C 1.43768 * 109.10771 * 18.34314 * 21 20 19 23 23 C 1.51663 * 132.11421 * 180.35364 * 19 18 17 24 24 C 1.38340 * 120.09636 * 359.44672 * 13 12 11 25 25 H 0.97000 * 119.99604 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.05187 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.83540 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.78803 * 180.29344 * 12 11 10 29 29 H 0.96993 * 120.00189 * 187.69859 * 14 13 12 30 30 H 1.08003 * 119.86670 * 0.02909 * 16 15 14 31 31 H 1.08001 * 120.09339 * 179.85403 * 17 16 15 32 32 H 1.07997 * 119.94520 * 179.97438 * 18 17 16 33 33 H 1.09006 * 110.75515 * 214.29902 * 22 21 20 34 34 H 1.09006 * 110.75338 * 91.12112 * 22 21 20 35 35 H 1.08994 * 110.93985 * 46.15790 * 23 19 18 36 36 H 1.09000 * 110.97414 * 282.47330 * 23 19 18 37 37 H 1.07997 * 120.16664 * 180.24969 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0666 -1.2241 0.2137 9 6 1.3288 -2.4204 -0.2781 10 6 1.8214 -3.6412 0.2213 11 6 1.1555 -4.8140 -0.0542 12 6 -0.0010 -4.7992 -0.8164 13 6 -0.4971 -3.5997 -1.3222 14 7 -1.6611 -3.5967 -2.0946 15 6 -2.4164 -4.7678 -2.2265 16 6 -2.3907 -5.4770 -3.4165 17 6 -3.1342 -6.6338 -3.5542 18 6 -3.9055 -7.0860 -2.4981 19 6 -3.9317 -6.3853 -1.3109 20 6 -3.1965 -5.2196 -1.1571 21 8 -3.3712 -4.6814 0.0848 22 6 -3.8991 -5.6888 0.9643 23 6 -4.6582 -6.6288 -0.0021 24 6 0.1580 -2.4107 -1.0559 25 1 -0.4849 0.8401 -0.0004 26 1 2.7203 -3.6574 0.8197 27 1 1.5346 -5.7498 0.3290 28 1 -0.5190 -5.7240 -1.0234 29 1 -1.9460 -2.7832 -2.5394 30 1 -1.7871 -5.1244 -4.2398 31 1 -3.1139 -7.1831 -4.4839 32 1 -4.4876 -7.9895 -2.6038 33 1 -4.5821 -5.2481 1.6905 34 1 -3.0932 -6.2222 1.4684 35 1 -4.5612 -7.6687 0.3097 36 1 -5.7073 -6.3434 -0.0792 37 1 -0.2278 -1.4797 -1.4440 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176080181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:34 Heat of formation + Delta-G solvation = 20.206588 kcal Electronic energy + Delta-G solvation = -21145.330356 eV Core-core repulsion = 18045.441106 eV Total energy + Delta-G solvation = -3099.889250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86141 -38.05421 -37.01362 -34.82509 -33.27225 -31.81273 -29.50902 -29.38480 -29.02959 -26.85471 -25.13219 -23.26993 -21.99201 -21.48734 -20.88078 -19.81599 -17.40747 -17.10112 -16.47919 -16.26011 -15.66543 -15.50643 -14.70867 -14.64291 -14.28994 -13.54436 -13.16890 -12.94665 -12.84067 -12.73421 -12.32851 -12.17126 -11.86376 -11.64678 -11.54470 -11.23084 -10.98599 -10.98082 -10.66557 -10.57906 -10.36952 -9.62760 -9.46758 -9.39486 -8.94296 -8.46201 -7.84879 -7.24342 -6.64910 -6.22544 -4.28156 1.43032 1.56104 2.89306 3.13010 3.18734 3.23840 3.34710 3.54753 3.87191 4.01810 4.23626 4.49516 4.70612 4.78568 5.04037 5.13019 5.27503 5.45060 5.55476 5.59327 5.75090 5.81204 5.86643 6.03214 6.31456 6.42071 6.52476 6.63722 6.64866 6.80351 6.92252 7.13328 7.18021 7.33926 7.45151 7.49211 7.89381 8.00083 8.12656 8.22520 8.52652 8.70222 8.87311 9.04983 9.13444 10.32878 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.004518 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.470023 B = 6195.785188 C = 6287.422724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.135 3.865 10 C -0.251 4.251 11 C -0.071 4.071 12 C -0.280 4.280 13 C 0.212 3.788 14 N -0.710 5.710 15 C 0.159 3.841 16 C -0.098 4.098 17 C -0.144 4.144 18 C -0.085 4.085 19 C -0.177 4.177 20 C 0.106 3.894 21 O -0.285 6.285 22 C 0.047 3.953 23 C -0.106 4.106 24 C -0.218 4.218 25 H 0.276 0.724 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.399 0.601 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.412 -9.969 -3.464 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.132 3.868 10 C -0.271 4.271 11 C -0.089 4.089 12 C -0.302 4.302 13 C 0.116 3.884 14 N -0.340 5.340 15 C 0.064 3.936 16 C -0.118 4.118 17 C -0.163 4.163 18 C -0.103 4.103 19 C -0.178 4.178 20 C 0.058 3.942 21 O -0.198 6.198 22 C -0.028 4.028 23 C -0.144 4.144 24 C -0.241 4.241 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.235 0.765 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.565 -9.705 -3.303 14.021 hybrid contribution 0.082 0.860 0.031 0.865 sum -9.483 -8.844 -3.272 13.374 Atomic orbital electron populations 1.69864 1.07370 1.28504 1.36597 1.25879 0.94746 1.01058 0.92500 0.86299 0.80917 0.81284 0.78381 1.18524 1.19906 1.20136 1.19579 0.96467 0.90713 1.42577 0.90593 1.17328 0.90450 0.91909 0.87130 1.20897 1.03710 0.93157 1.09365 1.20265 0.94921 0.96240 0.97518 1.19870 1.02240 0.94671 1.13467 1.17632 0.85009 0.94411 0.91347 1.41807 1.25576 1.09209 1.57379 1.16857 0.93529 0.91465 0.91784 1.21195 0.99105 0.94425 0.97103 1.20842 0.99329 0.97257 0.98842 1.20195 0.99451 0.99195 0.91493 1.20695 1.01828 0.98269 0.97010 1.20201 0.93708 0.93072 0.87253 1.87092 1.80387 1.34700 1.17617 1.23807 0.97395 0.88755 0.92848 1.21770 0.99773 1.01147 0.91666 1.20846 1.01386 0.94763 1.07151 0.91305 0.89307 0.89666 0.89988 0.76528 0.85128 0.85637 0.86211 0.88026 0.90661 0.89419 0.89560 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.31 10.77 55.55 0.60 -20.71 16 2 C 0.07 1.93 5.23 -17.34 -0.09 1.84 16 3 Si 0.91 19.23 29.58 -169.99 -5.03 14.21 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.46 -12.71 9.07 -37.75 -0.34 -13.06 16 8 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 9 C 0.13 3.75 5.58 -106.85 -0.60 3.15 16 10 C -0.25 -6.50 9.79 -38.83 -0.38 -6.88 16 11 C -0.07 -1.70 10.02 -39.69 -0.40 -2.10 16 12 C -0.28 -6.75 9.18 -39.08 -0.36 -7.11 16 13 C 0.21 5.18 6.58 -83.84 -0.55 4.63 16 14 N -0.71 -14.73 5.41 -8.26 -0.04 -14.77 16 15 C 0.16 2.92 4.58 -83.41 -0.38 2.54 16 16 C -0.10 -1.50 9.93 -39.48 -0.39 -1.89 16 17 C -0.14 -1.83 10.06 -39.55 -0.40 -2.23 16 18 C -0.08 -1.07 10.03 -39.66 -0.40 -1.47 16 19 C -0.18 -2.56 6.27 -104.12 -0.65 -3.21 16 20 C 0.11 1.90 6.44 -38.81 -0.25 1.65 16 21 O -0.29 -5.45 11.13 -21.27 -0.24 -5.69 16 22 C 0.05 0.64 8.00 38.06 0.30 0.95 16 23 C -0.11 -1.22 7.12 -26.51 -0.19 -1.40 16 24 C -0.22 -5.86 8.53 -38.67 -0.33 -6.19 16 25 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 26 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.08 1.89 6.77 -52.49 -0.36 1.54 16 29 H 0.40 7.73 8.84 -40.82 -0.36 7.36 16 30 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.12 3.38 6.07 -52.49 -0.32 3.06 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -30.92 315.32 -9.75 -40.67 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.39 Total: 12.31 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -5.40 Total: -30.77 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.55 Total: -35.48 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.24 Total: -5.69 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.92 -9.75 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176080181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.881 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds