Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50705 * 125.20294 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47027 * 269.97565 * 6 5 4 8 8 C 1.50696 * 109.47409 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99558 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00062 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99865 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47095 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47365 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99922 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00010 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00080 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47092 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47379 * 119.99954 * 18 16 14 21 21 H 1.48506 * 109.47089 * 239.99701 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.46819 * 29.96712 * 6 5 4 28 28 H 1.08992 * 109.47494 * 149.97165 * 6 5 4 29 29 H 1.09009 * 109.46882 * 299.99948 * 7 6 5 30 30 H 1.09002 * 109.47467 * 59.98990 * 7 6 5 31 31 H 0.96995 * 120.00153 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.46726 * 299.99666 * 11 10 8 33 33 H 1.08998 * 109.47064 * 59.99997 * 11 10 8 34 34 H 1.08996 * 109.47040 * 300.00081 * 12 11 10 35 35 H 1.09004 * 109.46726 * 59.99822 * 12 11 10 36 36 H 1.09005 * 109.47396 * 299.99826 * 13 12 11 37 37 H 1.08998 * 109.47568 * 60.00103 * 13 12 11 38 38 H 0.97006 * 119.99744 * 180.02562 * 17 16 14 39 39 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5980 -2.0955 0.0063 7 6 4.9514 -2.4678 -1.4350 8 6 5.9761 -3.5728 -1.4317 9 8 6.3840 -4.0183 -0.3799 10 7 6.4393 -4.0659 -2.5973 11 6 7.4351 -5.1405 -2.5940 12 6 7.7876 -5.5135 -4.0353 13 6 8.8280 -6.6353 -4.0318 14 6 9.1758 -7.0023 -5.4515 15 1 8.7018 -6.4873 -6.2739 16 6 10.0982 -7.9963 -5.7003 17 7 10.6751 -8.6239 -4.6987 18 14 10.5287 -8.4518 -7.4601 19 1 9.7470 -7.6045 -8.3961 20 1 11.9797 -8.2325 -7.6874 21 1 10.2013 -9.8810 -7.6957 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4954 -1.7577 0.5246 28 1 4.1898 -2.9675 0.5171 29 1 4.0540 -2.8056 -1.9535 30 1 5.3595 -1.5958 -1.9460 31 1 6.1128 -3.7098 -3.4384 32 1 8.3325 -4.8025 -2.0759 33 1 7.0270 -6.0124 -2.0828 34 1 6.8900 -5.8516 -4.5530 35 1 8.1955 -4.6417 -4.5468 36 1 9.7256 -6.2968 -3.5142 37 1 8.4206 -7.5072 -3.5202 38 1 11.3244 -9.3230 -4.8739 39 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176182782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = -41.085383 kcal Electronic energy + Delta-G solvation = -18177.807068 eV Core-core repulsion = 15210.703950 eV Total energy + Delta-G solvation = -2967.103118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64194 -38.58775 -35.52914 -34.19623 -33.31930 -31.33143 -30.13170 -27.90567 -26.84690 -25.01757 -22.92530 -21.47122 -20.72522 -19.80503 -19.23565 -17.49779 -16.72774 -16.40207 -15.82552 -15.44892 -15.17896 -14.50676 -14.47002 -14.28155 -13.66972 -13.52759 -13.23789 -12.98780 -12.63338 -12.35834 -12.30355 -11.97807 -11.87112 -11.77854 -11.68313 -11.26497 -10.93051 -10.88066 -10.74920 -10.58285 -9.91507 -9.88461 -9.39968 -9.12047 -8.86864 -8.79060 -8.58284 -8.38758 -6.03125 -4.06221 0.71916 1.37943 1.75366 2.39954 2.76395 3.29035 3.36151 3.38363 3.41581 4.41554 4.44283 4.69875 4.74729 4.86496 4.92200 5.05176 5.19765 5.26900 5.32696 5.32746 5.38408 5.52595 5.59453 5.72565 5.76614 5.86109 5.95285 6.12629 6.15019 6.25772 6.47713 6.58473 6.81859 6.99074 7.62411 7.69307 7.74633 7.95686 8.35193 8.39117 9.00709 9.58077 11.08160 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.002157 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.581290 B =12979.723598 C =13134.043059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.100 4.100 3 C -0.224 4.224 4 S 0.094 5.906 5 C -0.165 4.165 6 C -0.034 4.034 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.546 6.546 10 N -0.727 5.727 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.138 4.138 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.161 0.839 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.399 0.601 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 19.662 8.722 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.360 4.360 4 S 0.360 5.640 5 C -0.282 4.282 6 C -0.074 4.074 7 C -0.177 4.177 8 C 0.293 3.707 9 O -0.424 6.424 10 N -0.377 5.377 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.015 4.015 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.169 4.169 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.179 0.821 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.598 20.068 9.529 28.341 hybrid contribution -1.112 -0.904 -1.437 2.029 sum -18.710 19.164 8.092 27.979 Atomic orbital electron populations 1.20522 0.89876 1.02687 1.02314 1.18930 0.97401 0.92006 1.02905 1.25409 0.95865 1.02264 1.12432 1.84361 1.06167 1.00289 1.73226 1.24535 0.97933 0.97278 1.08473 1.19882 0.96495 0.94919 0.96086 1.21684 0.99167 0.98212 0.98588 1.20572 0.82533 0.83568 0.84066 1.90707 1.59581 1.60924 1.31166 1.46237 1.44114 1.39151 1.08213 1.21649 0.90600 0.88731 0.99732 1.21886 1.00825 1.00859 0.92308 1.19038 0.92916 0.92150 0.97368 1.21239 1.23449 1.18987 0.92334 0.92589 1.25043 0.96147 0.96259 0.97109 1.69980 1.28236 1.24496 1.30541 0.86520 0.78195 0.78272 0.84901 1.19760 1.20995 1.20997 1.20031 0.92333 0.99483 1.05006 0.91203 0.91414 0.91683 0.82143 0.89825 0.89023 0.88623 0.88838 0.76762 0.91785 0.91789 0.92731 0.92732 0.96268 0.96270 0.92973 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.14 36.01 0.37 -0.18 16 2 C -0.10 -0.81 5.80 -106.25 -0.62 -1.43 16 3 C -0.22 -1.79 10.98 29.04 0.32 -1.47 16 4 S 0.09 0.83 23.33 -107.50 -2.51 -1.68 16 5 C -0.16 -1.54 5.76 -36.00 -0.21 -1.75 16 6 C -0.03 -0.34 5.00 -27.88 -0.14 -0.48 16 7 C -0.14 -1.32 5.68 -27.89 -0.16 -1.48 16 8 C 0.51 7.09 7.83 -10.99 -0.09 7.01 16 9 O -0.55 -9.87 15.98 5.56 0.09 -9.79 16 10 N -0.73 -10.08 5.56 -60.29 -0.33 -10.42 16 11 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 12 C -0.12 -2.35 5.27 -26.74 -0.14 -2.49 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.14 -1.21 9.85 -41.21 -0.41 -1.62 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 27 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -32.42 346.90 -9.68 -42.10 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.22 Total: -0.97 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.64 Total: -14.83 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.40 Total: -36.50 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.42 -9.68 -42.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176182782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.011 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds