Wall clock time and date at job start Tue Mar 31 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33386 * 122.53763 * 2 1 4 4 S 1.75891 * 109.59176 * 179.74980 * 3 2 1 5 5 C 1.75886 * 90.96733 * 0.23276 * 4 3 2 6 6 C 1.50705 * 125.20294 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47027 * 269.97565 * 6 5 4 8 8 C 1.50696 * 109.47409 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99558 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00062 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99865 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47095 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47365 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99922 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00010 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00080 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47092 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47379 * 119.99954 * 18 16 14 21 21 H 1.48506 * 109.47089 * 239.99701 * 18 16 14 22 22 C 1.33384 * 109.59693 * 359.97438 * 5 4 3 23 23 H 1.09002 * 109.46861 * 90.02234 * 1 2 3 24 24 H 1.08996 * 109.46955 * 210.02379 * 1 2 3 25 25 H 1.08999 * 109.46605 * 330.02360 * 1 2 3 26 26 H 1.08002 * 125.20849 * 0.02562 * 3 2 1 27 27 H 1.09004 * 109.46819 * 29.96712 * 6 5 4 28 28 H 1.08992 * 109.47494 * 149.97165 * 6 5 4 29 29 H 1.09009 * 109.46882 * 299.99948 * 7 6 5 30 30 H 1.09002 * 109.47467 * 59.98990 * 7 6 5 31 31 H 0.96995 * 120.00153 * 359.97438 * 10 8 7 32 32 H 1.08995 * 109.46726 * 299.99666 * 11 10 8 33 33 H 1.08998 * 109.47064 * 59.99997 * 11 10 8 34 34 H 1.08996 * 109.47040 * 300.00081 * 12 11 10 35 35 H 1.09004 * 109.46726 * 59.99822 * 12 11 10 36 36 H 1.09005 * 109.47396 * 299.99826 * 13 12 11 37 37 H 1.08998 * 109.47568 * 60.00103 * 13 12 11 38 38 H 0.97006 * 119.99744 * 180.02562 * 17 16 14 39 39 H 1.07997 * 122.54195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2245 1.1245 0.0000 4 16 3.9387 0.7305 0.0072 5 6 3.5737 -0.9901 0.0028 6 6 4.5980 -2.0955 0.0063 7 6 4.9514 -2.4678 -1.4350 8 6 5.9761 -3.5728 -1.4317 9 8 6.3840 -4.0183 -0.3799 10 7 6.4393 -4.0659 -2.5973 11 6 7.4351 -5.1405 -2.5940 12 6 7.7876 -5.5135 -4.0353 13 6 8.8280 -6.6353 -4.0318 14 6 9.1758 -7.0023 -5.4515 15 1 8.7018 -6.4873 -6.2739 16 6 10.0982 -7.9963 -5.7003 17 7 10.6751 -8.6239 -4.6987 18 14 10.5287 -8.4518 -7.4601 19 1 9.7470 -7.6045 -8.3961 20 1 11.9797 -8.2325 -7.6874 21 1 10.2013 -9.8810 -7.6957 22 6 2.2516 -1.1669 -0.0030 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3632 0.8902 0.5135 26 1 1.8155 2.1241 0.0004 27 1 5.4954 -1.7577 0.5246 28 1 4.1898 -2.9675 0.5171 29 1 4.0540 -2.8056 -1.9535 30 1 5.3595 -1.5958 -1.9460 31 1 6.1128 -3.7098 -3.4384 32 1 8.3325 -4.8025 -2.0759 33 1 7.0270 -6.0124 -2.0828 34 1 6.8900 -5.8516 -4.5530 35 1 8.1955 -4.6417 -4.5468 36 1 9.7256 -6.2968 -3.5142 37 1 8.4206 -7.5072 -3.5202 38 1 11.3244 -9.3230 -4.8739 39 1 1.7965 -2.1463 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176182782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:02 Heat of formation + Delta-G solvation = -60.228621 kcal Electronic energy + Delta-G solvation = -18178.637181 eV Core-core repulsion = 15210.703950 eV Total energy + Delta-G solvation = -2967.933231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80368 -39.24409 -37.02807 -35.19516 -35.02188 -33.05222 -30.91982 -28.84839 -28.16298 -26.13852 -24.54499 -22.31443 -22.23893 -21.07515 -19.84471 -18.56996 -18.31821 -17.56394 -16.93941 -16.85218 -16.41175 -16.04576 -15.68587 -15.01411 -14.66387 -14.52632 -14.25912 -13.89765 -13.82667 -13.58122 -13.50111 -13.34559 -12.96928 -12.76649 -12.55819 -12.52340 -12.48047 -12.33655 -11.99694 -11.68392 -11.60227 -11.54736 -11.23347 -10.85859 -10.56915 -10.08897 -9.53892 -9.21648 -8.20304 -6.31823 0.07550 0.73354 1.12742 1.41530 1.41560 1.54935 1.63987 1.77378 2.24890 2.42537 3.13445 3.61520 3.91459 4.07007 4.11932 4.20689 4.22270 4.25824 4.49376 4.53927 4.54943 4.64439 4.78743 4.82277 4.88587 4.94156 5.00438 5.07142 5.15605 5.16479 5.28837 5.44858 5.52926 5.54773 5.66633 5.69908 5.83590 6.21472 6.58971 6.86085 7.27208 7.37893 8.91972 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041559 B = 0.002157 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.581290 B =12979.723598 C =13134.043059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.111 4.111 3 C -0.224 4.224 4 S 0.080 5.920 5 C -0.178 4.178 6 C -0.030 4.030 7 C -0.122 4.122 8 C 0.506 3.494 9 O -0.591 6.591 10 N -0.716 5.716 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.006 4.006 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.258 1.258 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.139 4.139 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.180 0.820 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.417 0.583 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.068 0.932 36 H -0.009 1.009 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 21.153 7.038 30.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.359 4.359 4 S 0.345 5.655 5 C -0.295 4.295 6 C -0.069 4.069 7 C -0.162 4.162 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.368 5.368 11 C 0.004 3.996 12 C -0.139 4.139 13 C -0.016 4.016 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.170 4.170 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.197 0.803 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.254 0.746 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.500 21.592 7.816 30.126 hybrid contribution -0.558 -1.346 -0.846 1.685 sum -20.058 20.245 6.970 29.339 Atomic orbital electron populations 1.20570 0.88203 1.03471 1.03027 1.19220 0.98695 0.91695 1.02673 1.25705 0.95115 1.03282 1.11761 1.84396 1.07358 1.00154 1.73566 1.24429 0.97974 0.97181 1.09915 1.19756 0.96147 0.94934 0.96097 1.21662 0.98605 0.97011 0.98923 1.21332 0.82489 0.83764 0.83048 1.90694 1.61204 1.62514 1.32792 1.46027 1.43216 1.38150 1.09416 1.21215 0.90921 0.89372 0.98056 1.21592 0.99527 0.99105 0.93725 1.18961 0.93454 0.93214 0.95949 1.21712 1.23448 1.19065 0.93532 0.91488 1.26052 0.96102 0.96268 1.01886 1.70125 1.29032 1.25240 1.33171 0.85347 0.78013 0.78097 0.79259 1.18144 1.20607 1.20579 1.20269 0.92216 1.00350 1.04137 0.90445 0.90935 0.90675 0.80257 0.91294 0.89874 0.86101 0.86831 0.74639 0.93436 0.93337 0.91288 0.91367 0.99033 0.98987 0.92823 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.14 71.24 0.72 -0.13 16 2 C -0.11 -1.56 5.80 -20.92 -0.12 -1.68 16 3 C -0.22 -3.12 10.98 66.72 0.73 -2.39 16 4 S 0.08 1.31 23.33 -56.49 -1.32 -0.01 16 5 C -0.18 -3.11 5.76 24.59 0.14 -2.96 16 6 C -0.03 -0.57 5.00 29.85 0.15 -0.43 16 7 C -0.12 -2.13 5.68 29.85 0.17 -1.96 16 8 C 0.51 13.71 7.83 87.66 0.69 14.40 16 9 O -0.59 -21.70 15.98 -3.04 -0.05 -21.75 16 10 N -0.72 -18.90 5.56 -463.06 -2.57 -21.47 16 11 C 0.13 4.51 5.67 86.38 0.49 5.00 16 12 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 13 C 0.02 1.14 4.97 29.85 0.15 1.29 16 14 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 17 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 18 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.14 -2.20 9.85 21.22 0.21 -1.99 16 23 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 25 H 0.07 0.53 8.12 -2.39 -0.02 0.51 16 26 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 27 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 28 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 29 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.42 8.04 8.47 -92.71 -0.79 7.25 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 36 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 39 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.97 346.90 2.80 -68.17 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.24 Total: 10.53 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.18 Total: -24.30 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -2.29 Total: -78.47 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -70.97 2.80 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176182782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.942 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds