Wall clock time and date at job start Tue Mar 31 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48509 * 109.46755 * 239.99755 * 3 2 1 5 5 H 1.48496 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47151 * 119.99960 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47259 * 179.72770 * 15 13 12 17 17 C 1.38250 * 119.95618 * 264.72061 * 16 15 13 18 18 C 1.38140 * 120.08135 * 179.76585 * 17 16 15 19 19 C 1.38770 * 119.98965 * 0.53589 * 18 17 16 20 20 O 1.35895 * 120.03981 * 179.70027 * 19 18 17 21 21 C 1.38673 * 119.91563 * 359.71976 * 19 18 17 22 22 C 1.38380 * 119.92238 * 0.02562 * 21 19 18 23 23 F 1.35102 * 119.99959 * 179.97438 * 22 21 19 24 24 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 26 26 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 27 27 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 28 28 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 29 29 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 30 30 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 12 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 34 34 H 1.08004 * 119.96064 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.00441 * 180.25334 * 18 17 16 36 36 H 0.96700 * 114.00272 * 270.01621 * 20 19 18 37 37 H 1.07999 * 120.03780 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4320 -6.1007 0.0049 13 6 1.9827 -7.3713 0.0070 14 8 0.7903 -7.5929 0.0135 15 6 2.9619 -8.5169 0.0080 16 6 2.2084 -9.8219 0.0171 17 6 1.9637 -10.4694 1.2138 18 6 1.2690 -11.6634 1.2255 19 6 0.8255 -12.2197 0.0341 20 8 0.1473 -13.3972 0.0439 21 6 1.0757 -11.5726 -1.1667 22 6 1.7674 -10.3740 -1.1738 23 9 2.0124 -9.7425 -2.3428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6245 -2.5563 0.8920 27 1 2.8717 -3.6036 0.8927 28 1 2.8717 -3.6053 -0.8872 29 1 0.8531 -5.0459 -0.8852 30 1 0.8536 -5.0438 0.8947 31 1 3.3857 -5.9234 0.0045 32 1 3.5848 -8.4631 -0.8849 33 1 3.5924 -8.4551 0.8950 34 1 2.3125 -10.0392 2.1410 35 1 1.0750 -12.1661 2.1614 36 1 0.7132 -14.1777 -0.0314 37 1 0.7311 -12.0035 -2.0951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180652749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:11 Heat of formation + Delta-G solvation = -120.408618 kcal Electronic energy + Delta-G solvation = -20617.958334 eV Core-core repulsion = 17081.202326 eV Total energy + Delta-G solvation = -3536.756008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.10890 -40.18446 -39.29873 -37.06048 -35.38849 -33.33541 -32.48336 -31.14447 -30.89752 -27.81164 -26.19282 -23.34149 -23.18410 -22.08816 -20.74005 -19.91333 -19.05115 -17.16302 -17.05154 -16.66537 -16.53150 -16.12252 -15.67444 -15.36631 -15.23264 -14.74168 -14.44603 -14.16035 -14.02165 -13.82568 -13.51573 -12.76539 -12.29040 -12.11356 -12.07065 -11.87645 -11.71708 -11.59599 -11.09515 -10.88773 -10.73840 -10.63106 -9.94292 -9.87132 -9.42231 -9.21129 -9.13491 -8.78999 -8.77494 -8.37415 -6.02054 -4.05413 0.73007 0.87536 2.75301 3.03515 3.31665 3.36476 3.38095 3.49688 3.62383 4.15233 4.33304 4.41858 4.43876 4.68100 4.91313 4.93891 5.14059 5.22065 5.33512 5.41137 5.66548 5.70081 5.74146 5.77300 5.96999 6.00108 6.15652 6.42819 6.47686 6.59138 6.82153 6.99568 7.22436 7.62752 7.68451 7.75499 7.96485 8.35482 8.39286 9.01081 9.58705 11.09206 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045606 B = 0.002468 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.805466 B =11340.419342 C =11392.175085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.508 3.492 14 O -0.536 6.536 15 C -0.104 4.104 16 C -0.104 4.104 17 C -0.063 4.063 18 C -0.154 4.154 19 C 0.132 3.868 20 O -0.494 6.494 21 C -0.182 4.182 22 C 0.132 3.868 23 F -0.132 7.132 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.392 0.608 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.236 -26.381 1.075 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.006 4.006 12 N -0.377 5.377 13 C 0.294 3.706 14 O -0.413 6.413 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.081 4.081 18 C -0.172 4.172 19 C 0.087 3.913 20 O -0.305 6.305 21 C -0.201 4.201 22 C 0.113 3.887 23 F -0.111 7.111 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.249 0.751 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.710 -26.016 1.081 26.889 hybrid contribution 1.246 0.885 -0.315 1.560 sum 7.956 -25.131 0.766 26.372 Atomic orbital electron populations 1.69961 1.06070 1.26820 1.50425 1.25038 0.94867 0.99320 0.95268 0.86632 0.79551 0.83068 0.78581 1.20239 1.21266 1.20239 1.21163 0.92945 0.90948 1.51107 0.92691 1.19029 0.93858 0.90853 0.97660 1.21883 0.99757 0.93328 1.00862 1.21653 0.91888 0.85079 1.02009 1.46187 1.10832 1.05808 1.74842 1.20373 0.89560 0.83906 0.76809 1.90734 1.16732 1.84707 1.49090 1.20618 0.97797 0.90153 1.05837 1.19387 1.02145 0.96645 0.92357 1.20777 0.96445 0.93873 0.96975 1.21422 0.99857 0.97711 0.98253 1.18097 0.93452 0.88233 0.91485 1.84846 1.35615 1.14134 1.95894 1.21314 1.02544 0.96551 0.99727 1.17229 0.98639 0.91700 0.81175 1.91517 1.92167 1.81503 1.45865 0.92850 0.96276 0.96295 0.92721 0.92707 0.91800 0.91759 0.76766 0.87636 0.87303 0.84445 0.84626 0.75121 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.34 5.27 -26.74 -0.14 -2.49 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 12 N -0.73 -10.16 5.56 -60.29 -0.33 -10.50 16 13 C 0.51 7.39 7.82 -10.98 -0.09 7.31 16 14 O -0.54 -10.25 16.03 5.56 0.09 -10.16 16 15 C -0.10 -1.03 5.60 -29.03 -0.16 -1.19 16 16 C -0.10 -1.14 4.38 -104.53 -0.46 -1.60 16 17 C -0.06 -0.58 9.67 -39.61 -0.38 -0.96 16 18 C -0.15 -1.35 9.99 -39.42 -0.39 -1.75 16 19 C 0.13 1.25 6.70 -39.22 -0.26 0.99 16 20 O -0.49 -3.91 13.50 -19.41 -0.26 -4.17 16 21 C -0.18 -1.91 9.97 -39.37 -0.39 -2.30 16 22 C 0.13 1.58 7.24 -39.44 -0.29 1.30 16 23 F -0.13 -1.73 16.56 2.25 0.04 -1.70 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 32 H 0.11 0.89 7.79 -51.93 -0.40 0.48 16 33 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.39 0.96 9.06 45.56 0.41 1.37 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -35.46 330.10 -7.02 -42.48 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.10 Total: 0.43 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.14 Total: -11.63 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.40 Total: -36.72 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.17 Total: -14.33 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.46 -7.02 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180652749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.925 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds