Wall clock time and date at job start Tue Mar 31 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48509 * 109.46755 * 239.99755 * 3 2 1 5 5 H 1.48496 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47151 * 119.99960 * 3 2 1 7 7 C 1.37878 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47259 * 179.72770 * 15 13 12 17 17 C 1.38250 * 119.95618 * 264.72061 * 16 15 13 18 18 C 1.38140 * 120.08135 * 179.76585 * 17 16 15 19 19 C 1.38770 * 119.98965 * 0.53589 * 18 17 16 20 20 O 1.35895 * 120.03981 * 179.70027 * 19 18 17 21 21 C 1.38673 * 119.91563 * 359.71976 * 19 18 17 22 22 C 1.38380 * 119.92238 * 0.02562 * 21 19 18 23 23 F 1.35102 * 119.99959 * 179.97438 * 22 21 19 24 24 H 0.97005 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 26 26 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 27 27 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 28 28 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 29 29 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 30 30 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 12 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 34 34 H 1.08004 * 119.96064 * 0.02562 * 17 16 15 35 35 H 1.07995 * 120.00441 * 180.25334 * 18 17 16 36 36 H 0.96700 * 114.00272 * 270.01621 * 20 19 18 37 37 H 1.07999 * 120.03780 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9871 0.0046 12 7 2.4320 -6.1007 0.0049 13 6 1.9827 -7.3713 0.0070 14 8 0.7903 -7.5929 0.0135 15 6 2.9619 -8.5169 0.0080 16 6 2.2084 -9.8219 0.0171 17 6 1.9637 -10.4694 1.2138 18 6 1.2690 -11.6634 1.2255 19 6 0.8255 -12.2197 0.0341 20 8 0.1473 -13.3972 0.0439 21 6 1.0757 -11.5726 -1.1667 22 6 1.7674 -10.3740 -1.1738 23 9 2.0124 -9.7425 -2.3428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6245 -2.5563 0.8920 27 1 2.8717 -3.6036 0.8927 28 1 2.8717 -3.6053 -0.8872 29 1 0.8531 -5.0459 -0.8852 30 1 0.8536 -5.0438 0.8947 31 1 3.3857 -5.9234 0.0045 32 1 3.5848 -8.4631 -0.8849 33 1 3.5924 -8.4551 0.8950 34 1 2.3125 -10.0392 2.1410 35 1 1.0750 -12.1661 2.1614 36 1 0.7132 -14.1777 -0.0314 37 1 0.7311 -12.0035 -2.0951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180652749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:10 Heat of formation + Delta-G solvation = -146.217959 kcal Electronic energy + Delta-G solvation = -20619.077511 eV Core-core repulsion = 17081.202326 eV Total energy + Delta-G solvation = -3537.875185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00718 -41.07848 -40.27202 -37.78611 -36.90461 -35.18839 -33.51752 -32.71261 -31.64143 -29.13101 -27.59724 -24.94956 -24.00645 -23.02380 -22.31867 -21.21103 -19.74009 -18.58034 -18.06491 -17.94423 -17.47028 -17.17767 -16.68317 -16.59849 -16.53328 -16.18148 -15.56392 -15.44329 -14.82522 -14.75987 -14.58827 -14.22725 -13.79522 -13.74352 -13.33348 -12.84947 -12.75632 -12.66384 -12.55821 -12.49432 -12.39381 -11.72811 -11.67255 -11.59915 -11.26681 -10.92106 -10.55354 -10.10035 -9.94920 -9.54107 -8.19792 -6.31712 0.00105 0.13953 1.41567 1.44880 1.52744 1.63356 2.14255 2.41795 2.56567 2.94511 3.13808 3.41910 3.58775 3.72248 3.96036 4.02402 4.19727 4.20512 4.24929 4.49851 4.52743 4.54505 4.77786 4.93376 4.95625 5.00164 5.02322 5.16543 5.27536 5.28785 5.43787 5.52464 5.69728 5.75499 5.83490 6.21350 6.58968 6.79630 6.85952 7.27564 7.38054 8.92223 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.045606 B = 0.002468 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.805466 B =11340.419342 C =11392.175085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.130 3.870 12 N -0.714 5.714 13 C 0.505 3.495 14 O -0.587 6.587 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.155 4.155 19 C 0.133 3.867 20 O -0.504 6.504 21 C -0.197 4.197 22 C 0.104 3.896 23 F -0.147 7.147 24 H 0.263 0.737 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.418 0.582 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.416 0.584 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.686 -27.076 2.097 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.366 5.366 13 C 0.293 3.707 14 O -0.468 6.468 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.081 4.081 18 C -0.173 4.173 19 C 0.088 3.912 20 O -0.318 6.318 21 C -0.216 4.216 22 C 0.085 3.915 23 F -0.126 7.126 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.255 0.745 32 H 0.141 0.859 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.276 0.724 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.228 -26.746 2.100 28.371 hybrid contribution 0.415 0.985 -0.620 1.236 sum 9.643 -25.761 1.480 27.546 Atomic orbital electron populations 1.70118 1.08021 1.27878 1.51656 1.26062 0.95760 1.03685 0.94768 0.85444 0.78158 0.77772 0.79328 1.19012 1.21248 1.18851 1.21660 0.93796 0.91950 1.50527 0.91372 1.18953 0.94496 0.93154 0.94922 1.21586 0.98368 0.91628 1.02255 1.21200 0.92083 0.85824 1.00360 1.45956 1.11241 1.04904 1.74514 1.21231 0.89704 0.84661 0.75092 1.90715 1.19310 1.85416 1.51319 1.20661 0.96728 0.87257 1.08601 1.19622 1.02852 0.97296 0.92550 1.21140 0.95845 0.93801 0.97322 1.21744 0.99039 0.97590 0.98912 1.18207 0.92836 0.88724 0.91393 1.84786 1.36523 1.14660 1.95806 1.21485 1.02881 0.96559 1.00661 1.17587 1.00063 0.92598 0.81263 1.91469 1.92468 1.81888 1.46736 0.92817 0.99265 0.99022 0.90998 0.91377 0.93915 0.93273 0.74450 0.85940 0.83214 0.81904 0.82281 0.72354 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.13 4.62 5.67 86.38 0.49 5.11 16 12 N -0.71 -18.93 5.56 -463.05 -2.57 -21.50 16 13 C 0.51 14.12 7.82 87.66 0.69 14.81 16 14 O -0.59 -22.68 16.03 -3.04 -0.05 -22.73 16 15 C -0.09 -1.61 5.60 29.10 0.16 -1.45 16 16 C -0.12 -2.50 4.38 -19.81 -0.09 -2.59 16 17 C -0.06 -1.03 9.67 22.25 0.22 -0.81 16 18 C -0.15 -2.38 9.99 22.37 0.22 -2.16 16 19 C 0.13 2.36 6.70 22.50 0.15 2.51 16 20 O -0.50 -7.13 13.50 -92.37 -1.25 -8.37 16 21 C -0.20 -4.09 9.97 22.41 0.22 -3.87 16 22 C 0.10 2.48 7.24 22.36 0.16 2.64 16 23 F -0.15 -3.93 16.56 44.97 0.74 -3.19 16 24 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.42 7.79 8.47 -92.71 -0.79 7.01 16 32 H 0.12 1.73 7.79 -2.39 -0.02 1.71 16 33 H 0.15 1.34 8.05 -2.39 -0.02 1.32 16 34 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.42 1.21 9.06 -74.06 -0.67 0.54 16 37 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -79.09 330.10 2.07 -77.02 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -0.35 Total: 8.40 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.23 Total: -18.04 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.29 Total: -78.93 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.30 Total: -31.10 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.09 2.07 -77.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180652749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.198 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds