Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47451 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47225 * 180.02562 * 4 3 2 6 6 C 1.36910 * 119.99713 * 268.99280 * 5 4 3 7 7 H 1.08001 * 119.99808 * 136.82310 * 6 5 4 8 8 C 1.39019 * 119.99899 * 316.82896 * 6 5 4 9 9 N 1.31375 * 120.00337 * 343.71778 * 8 6 5 10 10 Si 1.86803 * 119.99799 * 163.71816 * 8 6 5 11 11 H 1.48499 * 109.47127 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46773 * 119.99716 * 10 8 6 13 13 H 1.48497 * 109.47383 * 239.99656 * 10 8 6 14 14 C 1.34770 * 120.00175 * 88.99421 * 5 4 3 15 15 O 1.21625 * 120.00251 * 4.60085 * 14 5 4 16 16 C 1.47500 * 119.99759 * 184.59601 * 14 5 4 17 17 C 1.39787 * 120.08278 * 144.51975 * 16 14 5 18 18 C 1.37724 * 119.94208 * 179.76685 * 17 16 14 19 19 C 1.38941 * 120.12297 * 0.50978 * 18 17 16 20 20 O 1.35765 * 119.91185 * 179.76378 * 19 18 17 21 21 C 1.39185 * 120.17267 * 359.49008 * 19 18 17 22 22 F 1.35096 * 119.97248 * 180.27826 * 21 19 18 23 23 C 1.37881 * 120.05163 * 0.25308 * 21 19 18 24 24 H 1.09000 * 109.47351 * 300.00079 * 1 2 3 25 25 H 1.09002 * 109.46978 * 60.00293 * 1 2 3 26 26 H 1.09007 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47351 * 239.99921 * 2 1 3 28 28 H 1.08999 * 109.47699 * 119.99620 * 2 1 3 29 29 H 1.09000 * 109.47077 * 59.99753 * 3 2 1 30 30 H 1.09004 * 109.46961 * 300.00259 * 3 2 1 31 31 H 1.09000 * 109.47273 * 59.99761 * 4 3 2 32 32 H 1.09002 * 109.46718 * 299.99754 * 4 3 2 33 33 H 0.97003 * 120.00452 * 180.02562 * 9 8 6 34 34 H 1.07995 * 120.03096 * 0.02562 * 17 16 14 35 35 H 1.08003 * 119.93498 * 180.25225 * 18 17 16 36 36 H 0.96703 * 114.00200 * 269.72528 * 20 19 18 37 37 H 1.08002 * 120.05864 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3055 3.4629 -1.1853 7 1 3.9911 4.4870 -1.3224 8 6 4.9612 2.7936 -2.2123 9 7 5.6212 1.6864 -1.9586 10 14 4.9038 3.4687 -3.9531 11 1 4.1018 4.7183 -3.9733 12 1 6.2843 3.7596 -4.4169 13 1 4.2804 2.4653 -4.8529 14 6 4.2640 3.4653 1.1672 15 8 4.1250 2.8722 2.2199 16 6 4.6579 4.8868 1.1680 17 6 4.1904 5.7428 2.1694 18 6 4.5639 7.0684 2.1701 19 6 5.3960 7.5590 1.1714 20 8 5.7576 8.8676 1.1735 21 6 5.8644 6.7110 0.1719 22 9 6.6777 7.1910 -0.7941 23 6 5.4992 5.3814 0.1672 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8892 33 1 6.0790 1.2196 -2.6751 34 1 3.5403 5.3641 2.9442 35 1 4.2060 7.7288 2.9461 36 1 5.1580 9.4422 0.6782 37 1 5.8623 4.7235 -0.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186220204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -105.356654 kcal Electronic energy + Delta-G solvation = -22241.080927 eV Core-core repulsion = 18704.977622 eV Total energy + Delta-G solvation = -3536.103306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.42811 -39.57228 -38.34659 -36.23855 -35.33922 -34.09491 -31.67554 -30.47761 -29.61555 -28.10546 -25.21585 -23.78054 -22.57624 -21.89210 -20.51053 -19.48790 -18.38370 -17.87668 -16.53297 -16.02614 -15.69709 -15.43801 -14.83074 -14.72361 -14.56267 -14.40499 -13.93585 -13.47038 -13.39063 -13.04341 -12.91202 -12.33217 -12.14226 -11.93043 -11.82696 -11.51336 -11.37848 -11.25535 -11.10896 -10.64438 -10.56773 -10.43368 -10.38823 -10.23187 -9.80596 -9.25987 -8.68082 -8.46419 -8.19610 -7.57271 -6.52395 -4.27699 1.21066 1.61175 3.02569 3.14275 3.17225 3.48498 3.96736 4.16777 4.27739 4.53635 4.66631 4.88193 5.21014 5.41799 5.43573 5.52012 5.60596 5.72284 5.86047 6.01116 6.14011 6.19630 6.28245 6.32936 6.36757 6.44610 6.52858 6.58743 6.63920 6.75258 6.91257 7.04710 7.11939 7.24181 7.34879 7.73618 7.82264 8.20456 8.88245 9.30886 9.75407 10.48131 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.006658 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.908913 B = 4204.551950 C = 5570.182655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.425 5.425 6 C -0.348 4.348 7 H 0.092 0.908 8 C 0.048 3.952 9 N -0.851 5.851 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.509 3.491 15 O -0.596 6.596 16 C -0.072 4.072 17 C -0.078 4.078 18 C -0.135 4.135 19 C 0.070 3.930 20 O -0.492 6.492 21 C 0.053 3.947 22 F -0.138 7.138 23 C -0.088 4.088 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.273 0.727 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.386 0.614 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 5.464 0.917 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.167 4.167 4 C -0.007 4.007 5 N -0.141 5.141 6 C -0.476 4.476 7 H 0.110 0.890 8 C -0.160 4.160 9 N -0.486 5.486 10 Si 0.734 3.266 11 H -0.189 1.189 12 H -0.203 1.203 13 H -0.202 1.202 14 C 0.298 3.702 15 O -0.482 6.482 16 C -0.075 4.075 17 C -0.097 4.097 18 C -0.154 4.154 19 C 0.024 3.976 20 O -0.301 6.301 21 C 0.033 3.967 22 F -0.117 7.117 23 C -0.107 4.107 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.241 0.759 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.416 4.791 1.593 6.708 hybrid contribution -0.199 0.635 -1.499 1.640 sum -4.615 5.426 0.094 7.124 Atomic orbital electron populations 1.21757 0.96576 1.00739 1.01492 1.21429 0.95034 0.97614 1.01689 1.21913 0.97627 0.95662 1.01449 1.21409 0.91218 0.84646 1.03462 1.43281 1.54560 1.11972 1.04257 1.19488 1.37884 0.99516 0.90730 0.89019 1.25449 0.93956 0.96280 1.00276 1.69889 1.27952 1.17307 1.33453 0.86142 0.78612 0.79473 0.82329 1.18880 1.20269 1.20193 1.18168 0.81083 0.86340 0.84608 1.90647 1.57708 1.68128 1.31760 1.19985 0.97723 0.95194 0.94586 1.21140 0.98890 0.91972 0.97734 1.21068 0.98793 0.96338 0.99203 1.18586 0.99281 0.84361 0.95332 1.84808 1.53807 1.15210 1.76305 1.18107 0.96521 0.93572 0.88503 1.91460 1.70408 1.88556 1.61255 1.22256 0.95999 0.93082 0.99376 0.93070 0.93022 0.93379 0.92195 0.92333 0.92948 0.92121 0.88157 0.92390 0.91676 0.84739 0.84785 0.75865 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.46 5.54 -26.73 -0.15 -2.61 16 4 C 0.12 2.63 5.01 -4.04 -0.02 2.61 16 5 N -0.42 -10.22 2.47 -116.00 -0.29 -10.51 16 6 C -0.35 -8.27 6.07 -14.99 -0.09 -8.36 16 7 H 0.09 2.13 6.48 -52.49 -0.34 1.79 16 8 C 0.05 1.15 4.96 -17.46 -0.09 1.06 16 9 N -0.85 -21.29 11.57 55.50 0.64 -20.65 16 10 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 11 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 14 C 0.51 12.26 7.36 -12.49 -0.09 12.17 16 15 O -0.60 -15.54 16.40 5.26 0.09 -15.45 16 16 C -0.07 -1.50 5.46 -104.96 -0.57 -2.07 16 17 C -0.08 -1.38 9.60 -39.19 -0.38 -1.75 16 18 C -0.14 -2.06 9.97 -39.51 -0.39 -2.45 16 19 C 0.07 1.14 6.72 -38.97 -0.26 0.88 16 20 O -0.49 -6.88 13.35 -19.01 -0.25 -7.13 16 21 C 0.05 0.98 7.30 -39.36 -0.29 0.69 16 22 F -0.14 -2.59 17.10 2.25 0.04 -2.55 16 23 C -0.09 -1.80 7.76 -39.13 -0.30 -2.10 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 2.40 5.77 -51.93 -0.30 2.10 16 32 H 0.06 1.38 7.39 -51.93 -0.38 1.00 16 33 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.13 2.24 8.00 -52.49 -0.42 1.82 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.39 3.43 9.06 45.56 0.41 3.84 16 37 H 0.18 3.94 5.65 -52.49 -0.30 3.64 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -28.30 319.09 -6.26 -34.56 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.84 Total: 8.99 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.42 Total: -5.64 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.36 Total: -31.16 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.17 Total: -22.59 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.30 -6.26 -34.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186220204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.798 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds