Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47451 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47225 * 180.02562 * 4 3 2 6 6 C 1.36910 * 119.99713 * 268.99280 * 5 4 3 7 7 H 1.08001 * 119.99808 * 136.82310 * 6 5 4 8 8 C 1.39019 * 119.99899 * 316.82896 * 6 5 4 9 9 N 1.31375 * 120.00337 * 343.71778 * 8 6 5 10 10 Si 1.86803 * 119.99799 * 163.71816 * 8 6 5 11 11 H 1.48499 * 109.47127 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46773 * 119.99716 * 10 8 6 13 13 H 1.48497 * 109.47383 * 239.99656 * 10 8 6 14 14 C 1.34770 * 120.00175 * 88.99421 * 5 4 3 15 15 O 1.21625 * 120.00251 * 4.60085 * 14 5 4 16 16 C 1.47500 * 119.99759 * 184.59601 * 14 5 4 17 17 C 1.39787 * 120.08278 * 144.51975 * 16 14 5 18 18 C 1.37724 * 119.94208 * 179.76685 * 17 16 14 19 19 C 1.38941 * 120.12297 * 0.50978 * 18 17 16 20 20 O 1.35765 * 119.91185 * 179.76378 * 19 18 17 21 21 C 1.39185 * 120.17267 * 359.49008 * 19 18 17 22 22 F 1.35096 * 119.97248 * 180.27826 * 21 19 18 23 23 C 1.37881 * 120.05163 * 0.25308 * 21 19 18 24 24 H 1.09000 * 109.47351 * 300.00079 * 1 2 3 25 25 H 1.09002 * 109.46978 * 60.00293 * 1 2 3 26 26 H 1.09007 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47351 * 239.99921 * 2 1 3 28 28 H 1.08999 * 109.47699 * 119.99620 * 2 1 3 29 29 H 1.09000 * 109.47077 * 59.99753 * 3 2 1 30 30 H 1.09004 * 109.46961 * 300.00259 * 3 2 1 31 31 H 1.09000 * 109.47273 * 59.99761 * 4 3 2 32 32 H 1.09002 * 109.46718 * 299.99754 * 4 3 2 33 33 H 0.97003 * 120.00452 * 180.02562 * 9 8 6 34 34 H 1.07995 * 120.03096 * 0.02562 * 17 16 14 35 35 H 1.08003 * 119.93498 * 180.25225 * 18 17 16 36 36 H 0.96703 * 114.00200 * 269.72528 * 20 19 18 37 37 H 1.08002 * 120.05864 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3055 3.4629 -1.1853 7 1 3.9911 4.4870 -1.3224 8 6 4.9612 2.7936 -2.2123 9 7 5.6212 1.6864 -1.9586 10 14 4.9038 3.4687 -3.9531 11 1 4.1018 4.7183 -3.9733 12 1 6.2843 3.7596 -4.4169 13 1 4.2804 2.4653 -4.8529 14 6 4.2640 3.4653 1.1672 15 8 4.1250 2.8722 2.2199 16 6 4.6579 4.8868 1.1680 17 6 4.1904 5.7428 2.1694 18 6 4.5639 7.0684 2.1701 19 6 5.3960 7.5590 1.1714 20 8 5.7576 8.8676 1.1735 21 6 5.8644 6.7110 0.1719 22 9 6.6777 7.1910 -0.7941 23 6 5.4992 5.3814 0.1672 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9336 0.9287 0.8892 33 1 6.0790 1.2196 -2.6751 34 1 3.5403 5.3641 2.9442 35 1 4.2060 7.7288 2.9461 36 1 5.1580 9.4422 0.6782 37 1 5.8623 4.7235 -0.6085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186220204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -122.402450 kcal Electronic energy + Delta-G solvation = -22241.820089 eV Core-core repulsion = 18704.977622 eV Total energy + Delta-G solvation = -3536.842467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88218 -41.18254 -39.84192 -37.61723 -37.10230 -35.61785 -33.50857 -31.89870 -31.07889 -29.58933 -27.05050 -25.27478 -24.01602 -23.34172 -21.97068 -21.27457 -19.76405 -19.40298 -18.17916 -17.60369 -17.21376 -16.91375 -16.47896 -16.21849 -16.13219 -15.91891 -15.62710 -14.86522 -14.84441 -14.60518 -14.32620 -13.85715 -13.68215 -13.34813 -13.25644 -13.11407 -12.95196 -12.83344 -12.77416 -12.13438 -12.06041 -11.97238 -11.82069 -11.62229 -11.42183 -11.08894 -10.51774 -9.90863 -9.64703 -9.42352 -8.35949 -6.16373 -0.21760 0.19838 1.37885 1.44405 1.55423 1.88109 2.25031 2.59391 2.83056 2.92467 3.08597 3.36838 3.83678 3.98295 4.09592 4.16298 4.25907 4.31293 4.40134 4.54837 4.77737 4.84057 4.86619 4.96765 5.00163 5.04489 5.06633 5.14143 5.17944 5.35258 5.40443 5.42605 5.48352 5.54514 5.73951 5.98599 6.34649 6.72766 7.02236 7.45199 7.90192 8.66204 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.006658 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.908913 B = 4204.551950 C = 5570.182655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.115 4.115 4 C 0.117 3.883 5 N -0.436 5.436 6 C -0.350 4.350 7 H 0.095 0.905 8 C 0.012 3.988 9 N -0.886 5.886 10 Si 0.969 3.031 11 H -0.257 1.257 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.628 6.628 16 C -0.102 4.102 17 C -0.071 4.071 18 C -0.115 4.115 19 C 0.096 3.904 20 O -0.492 6.492 21 C 0.040 3.960 22 F -0.142 7.142 23 C -0.098 4.098 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.275 0.725 34 H 0.144 0.856 35 H 0.179 0.821 36 H 0.414 0.586 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 7.645 0.972 9.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.006 4.006 5 N -0.151 5.151 6 C -0.478 4.478 7 H 0.112 0.888 8 C -0.193 4.193 9 N -0.522 5.522 10 Si 0.793 3.207 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.197 1.197 14 C 0.287 3.713 15 O -0.517 6.517 16 C -0.105 4.105 17 C -0.090 4.090 18 C -0.133 4.133 19 C 0.050 3.950 20 O -0.305 6.305 21 C 0.020 3.980 22 F -0.121 7.121 23 C -0.117 4.117 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.196 0.804 36 H 0.274 0.726 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.588 6.999 1.627 9.102 hybrid contribution 0.223 0.078 -1.438 1.457 sum -5.365 7.077 0.189 8.883 Atomic orbital electron populations 1.21710 0.94081 1.02346 1.01848 1.21412 0.97163 0.95073 1.01771 1.21780 0.94895 0.97950 1.00686 1.21386 0.93545 0.84155 1.01543 1.43537 1.54581 1.12339 1.04660 1.19633 1.37824 0.99696 0.90636 0.88768 1.26154 0.93368 0.96393 1.03380 1.69985 1.29067 1.18654 1.34511 0.85222 0.78331 0.79129 0.78035 1.18055 1.20559 1.19732 1.18748 0.80523 0.87882 0.84113 1.90596 1.59223 1.69277 1.32585 1.19824 0.99980 0.93967 0.96777 1.21298 0.98459 0.92657 0.96608 1.21406 0.97118 0.95486 0.99305 1.18580 0.97372 0.85165 0.93932 1.84746 1.54903 1.14107 1.76761 1.18179 0.97183 0.93214 0.89435 1.91444 1.70643 1.88411 1.61620 1.21875 0.96938 0.93868 0.99053 0.92834 0.92565 0.91159 0.92041 0.92386 0.93912 0.92403 0.89573 0.94550 0.91549 0.83820 0.80375 0.72598 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.68 5.93 30.59 0.18 -3.50 16 3 C -0.11 -4.52 5.54 30.59 0.17 -4.35 16 4 C 0.12 5.57 5.01 86.38 0.43 6.00 16 5 N -0.44 -21.87 2.47 -639.17 -1.58 -23.45 16 6 C -0.35 -17.15 6.07 84.09 0.51 -16.63 16 7 H 0.09 4.49 6.48 -2.91 -0.02 4.47 16 8 C 0.01 0.56 4.96 84.95 0.42 0.98 16 9 N -0.89 -45.93 11.57 21.68 0.25 -45.68 16 10 Si 0.97 38.54 29.58 68.60 2.03 40.57 16 11 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 12 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 14 C 0.50 24.86 7.36 86.69 0.64 25.50 16 15 O -0.63 -34.03 16.40 -4.11 -0.07 -34.10 16 16 C -0.10 -4.33 5.46 -20.09 -0.11 -4.44 16 17 C -0.07 -2.38 9.60 22.52 0.22 -2.17 16 18 C -0.12 -3.05 9.97 22.32 0.22 -2.83 16 19 C 0.10 2.79 6.72 22.67 0.15 2.94 16 20 O -0.49 -11.53 13.35 -90.92 -1.21 -12.74 16 21 C 0.04 1.42 7.30 22.41 0.16 1.58 16 22 F -0.14 -5.19 17.10 44.97 0.77 -4.43 16 23 C -0.10 -4.06 7.76 22.56 0.18 -3.88 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 31 H 0.09 4.33 5.77 -2.39 -0.01 4.32 16 32 H 0.04 1.84 7.39 -2.39 -0.02 1.82 16 33 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 34 H 0.14 4.54 8.00 -2.91 -0.02 4.52 16 35 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.41 5.27 9.06 -74.06 -0.67 4.60 16 37 H 0.15 6.93 5.65 -2.91 -0.02 6.92 16 Total: -1.00 -63.18 319.09 4.50 -58.67 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.43 Total: 24.83 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 3.89 Total: -3.68 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.33 Total: -69.13 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.28 Total: -46.84 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.77 Total: -4.43 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -63.18 4.50 -58.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186220204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.731 kcal (2) G-P(sol) polarization free energy of solvation -63.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds