Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46733 * 2 1 4 4 C 1.53008 * 109.47048 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47031 * 179.97438 * 4 3 2 6 6 C 1.36924 * 119.99819 * 96.33730 * 5 4 3 7 7 H 1.07999 * 119.99727 * 221.48804 * 6 5 4 8 8 C 1.39007 * 119.99778 * 41.21024 * 6 5 4 9 9 N 1.31387 * 120.00430 * 10.56481 * 8 6 5 10 10 Si 1.86806 * 119.99558 * 190.56022 * 8 6 5 11 11 H 1.48499 * 109.46929 * 90.00459 * 10 8 6 12 12 H 1.48501 * 109.47043 * 210.00463 * 10 8 6 13 13 H 1.48496 * 109.47059 * 330.00159 * 10 8 6 14 14 C 1.34770 * 120.00088 * 276.33169 * 5 4 3 15 15 O 1.21636 * 120.00090 * 354.90736 * 14 5 4 16 16 C 1.47357 * 120.00060 * 174.90694 * 14 5 4 17 17 C 1.39865 * 120.11095 * 44.90291 * 16 14 5 18 18 C 1.37604 * 119.92356 * 179.69736 * 17 16 14 19 19 C 1.39110 * 120.16325 * 0.57671 * 18 17 16 20 20 O 1.35719 * 119.88324 * 179.69525 * 19 18 17 21 21 C 1.38851 * 120.23654 * 359.72061 * 19 18 17 22 22 C 1.38036 * 120.06713 * 359.97438 * 21 19 18 23 23 F 1.35105 * 120.08324 * 180.02562 * 22 21 19 24 24 H 1.09001 * 109.46513 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47088 * 299.99717 * 1 2 3 26 26 H 1.08992 * 109.47261 * 60.00024 * 1 2 3 27 27 H 1.08995 * 109.47400 * 240.00255 * 2 1 3 28 28 H 1.08998 * 109.47313 * 119.99529 * 2 1 3 29 29 H 1.09002 * 109.47598 * 60.00110 * 3 2 1 30 30 H 1.09006 * 109.47180 * 299.99724 * 3 2 1 31 31 H 1.09002 * 109.46993 * 59.99542 * 4 3 2 32 32 H 1.09000 * 109.46690 * 300.00241 * 4 3 2 33 33 H 0.96999 * 119.99743 * 179.97438 * 9 8 6 34 34 H 1.07994 * 120.03945 * 359.97109 * 17 16 14 35 35 H 1.07995 * 119.91872 * 180.29382 * 18 17 16 36 36 H 0.96704 * 114.00113 * 270.02525 * 20 19 18 37 37 H 1.07996 * 119.96775 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.4103 3.4260 1.1770 7 1 4.1342 4.4537 1.3618 8 6 5.1181 2.7129 2.1376 9 7 5.6289 1.5394 1.8408 10 14 5.3432 3.4233 3.8506 11 1 4.2175 2.9912 4.7174 12 1 6.6241 2.9374 4.4237 13 1 5.3668 4.9060 3.7724 14 6 4.1610 3.5018 -1.1615 15 8 3.9374 2.9391 -2.2165 16 6 4.5442 4.9246 -1.1521 17 6 5.6029 5.3608 -0.3490 18 6 5.9616 6.6893 -0.3479 19 6 5.2660 7.6017 -1.1345 20 8 5.6206 8.9117 -1.1244 21 6 4.2099 7.1771 -1.9297 22 6 3.8460 5.8456 -1.9430 23 9 2.8188 5.4320 -2.7170 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 6.1231 1.0420 2.5111 34 1 6.1412 4.6551 0.2663 35 1 6.7821 7.0252 0.2687 36 1 5.1625 9.4381 -0.4548 37 1 3.6732 7.8891 -2.5391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186326457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = -106.366608 kcal Electronic energy + Delta-G solvation = -22362.051123 eV Core-core repulsion = 18825.904022 eV Total energy + Delta-G solvation = -3536.147101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.38418 -39.53586 -38.43227 -36.10870 -35.27120 -34.01371 -31.60478 -30.48373 -29.74667 -28.08214 -25.09403 -23.69961 -22.55609 -21.93309 -20.47126 -19.41238 -18.46782 -17.73426 -16.42127 -16.13900 -15.77089 -15.22068 -14.86126 -14.77075 -14.51319 -14.39694 -13.82410 -13.72306 -13.28192 -13.10856 -12.87965 -12.24693 -12.14564 -12.05183 -11.56031 -11.43581 -11.34131 -11.18514 -11.06384 -10.62622 -10.55445 -10.48627 -10.37025 -10.25596 -9.77813 -9.18632 -8.66685 -8.52982 -8.17971 -7.56154 -6.45803 -4.24409 1.23933 1.56722 3.02968 3.12784 3.13945 3.52249 3.97291 4.03065 4.25551 4.60138 4.83580 4.89606 5.14880 5.34533 5.48448 5.49536 5.66308 5.70913 5.78850 6.03780 6.08417 6.24751 6.30920 6.39645 6.41192 6.44952 6.57817 6.69683 6.72300 6.80577 6.83860 7.06563 7.12106 7.26016 7.46041 7.71029 7.86136 8.27056 8.92527 9.36024 9.80603 10.53644 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.007289 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.338592 B = 3840.306590 C = 5425.463117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.427 5.427 6 C -0.340 4.340 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.860 5.860 10 Si 0.915 3.085 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.509 3.491 15 O -0.589 6.589 16 C -0.130 4.130 17 C -0.018 4.018 18 C -0.172 4.172 19 C 0.133 3.867 20 O -0.498 6.498 21 C -0.200 4.200 22 C 0.145 3.855 23 F -0.128 7.128 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.272 0.728 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.389 0.611 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 6.633 1.183 7.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.169 4.169 4 C -0.008 4.008 5 N -0.144 5.144 6 C -0.468 4.468 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.496 5.496 10 Si 0.741 3.259 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.298 3.702 15 O -0.474 6.474 16 C -0.134 4.134 17 C -0.037 4.037 18 C -0.191 4.191 19 C 0.088 3.912 20 O -0.308 6.308 21 C -0.220 4.220 22 C 0.125 3.875 23 F -0.106 7.106 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.245 0.755 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.338 5.967 0.300 6.416 hybrid contribution -0.383 0.488 1.224 1.372 sum -2.721 6.455 1.524 7.169 Atomic orbital electron populations 1.21759 0.96649 1.00680 1.01478 1.21414 0.94959 0.97615 1.01643 1.21938 0.97947 0.95658 1.01317 1.21500 0.90877 0.84473 1.03901 1.43301 1.54422 1.11920 1.04730 1.19485 1.34731 0.98917 0.93640 0.89258 1.25456 0.94604 0.96061 1.00086 1.69806 1.32121 1.12968 1.34741 0.86105 0.78027 0.79588 0.82155 1.20103 1.20675 1.19083 1.18025 0.81635 0.86001 0.84572 1.90674 1.55723 1.69888 1.31122 1.20264 0.98740 0.95220 0.99169 1.21551 0.93649 0.95127 0.93351 1.21418 1.02402 0.93689 1.01604 1.18220 0.93252 0.83996 0.95735 1.84754 1.67817 1.17618 1.60619 1.21091 1.00702 0.94736 1.05434 1.17486 0.86720 0.91633 0.91688 1.91518 1.55786 1.90923 1.72367 0.93399 0.93074 0.93070 0.92355 0.92205 0.92391 0.92924 0.92861 0.87103 0.91743 0.82212 0.84925 0.75451 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.66 5.49 -26.73 -0.15 -2.81 16 4 C 0.12 2.73 4.87 -4.04 -0.02 2.71 16 5 N -0.43 -10.57 2.52 -116.05 -0.29 -10.86 16 6 C -0.34 -8.09 6.54 -14.99 -0.10 -8.19 16 7 H 0.09 2.07 6.69 -52.49 -0.35 1.71 16 8 C 0.04 1.04 5.13 -17.46 -0.09 0.95 16 9 N -0.86 -21.36 11.16 55.50 0.62 -20.74 16 10 Si 0.92 18.17 29.57 -169.99 -5.03 13.15 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 13 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 14 C 0.51 12.82 7.00 -12.55 -0.09 12.74 16 15 O -0.59 -16.33 16.13 5.25 0.08 -16.24 16 16 C -0.13 -2.82 5.20 -104.90 -0.55 -3.36 16 17 C -0.02 -0.35 7.87 -39.20 -0.31 -0.66 16 18 C -0.17 -2.73 9.96 -39.49 -0.39 -3.12 16 19 C 0.13 2.00 6.71 -39.03 -0.26 1.74 16 20 O -0.50 -6.15 13.49 -18.86 -0.25 -6.40 16 21 C -0.20 -3.25 9.95 -39.43 -0.39 -3.65 16 22 C 0.15 2.89 7.24 -38.98 -0.28 2.61 16 23 F -0.13 -2.71 16.39 2.25 0.04 -2.67 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 1.32 7.55 -51.93 -0.39 0.93 16 32 H 0.11 2.72 5.48 -51.93 -0.28 2.44 16 33 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.16 3.22 6.54 -52.49 -0.34 2.88 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.39 2.79 9.06 45.56 0.41 3.21 16 37 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -29.24 319.14 -6.34 -35.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -3.90 Total: 8.33 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.42 Total: -4.95 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.33 Total: -31.60 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.17 Total: -22.64 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.24 -6.34 -35.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186326457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.788 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds