Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46733 * 2 1 4 4 C 1.53008 * 109.47048 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47031 * 179.97438 * 4 3 2 6 6 C 1.36924 * 119.99819 * 96.33730 * 5 4 3 7 7 H 1.07999 * 119.99727 * 221.48804 * 6 5 4 8 8 C 1.39007 * 119.99778 * 41.21024 * 6 5 4 9 9 N 1.31387 * 120.00430 * 10.56481 * 8 6 5 10 10 Si 1.86806 * 119.99558 * 190.56022 * 8 6 5 11 11 H 1.48499 * 109.46929 * 90.00459 * 10 8 6 12 12 H 1.48501 * 109.47043 * 210.00463 * 10 8 6 13 13 H 1.48496 * 109.47059 * 330.00159 * 10 8 6 14 14 C 1.34770 * 120.00088 * 276.33169 * 5 4 3 15 15 O 1.21636 * 120.00090 * 354.90736 * 14 5 4 16 16 C 1.47357 * 120.00060 * 174.90694 * 14 5 4 17 17 C 1.39865 * 120.11095 * 44.90291 * 16 14 5 18 18 C 1.37604 * 119.92356 * 179.69736 * 17 16 14 19 19 C 1.39110 * 120.16325 * 0.57671 * 18 17 16 20 20 O 1.35719 * 119.88324 * 179.69525 * 19 18 17 21 21 C 1.38851 * 120.23654 * 359.72061 * 19 18 17 22 22 C 1.38036 * 120.06713 * 359.97438 * 21 19 18 23 23 F 1.35105 * 120.08324 * 180.02562 * 22 21 19 24 24 H 1.09001 * 109.46513 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47088 * 299.99717 * 1 2 3 26 26 H 1.08992 * 109.47261 * 60.00024 * 1 2 3 27 27 H 1.08995 * 109.47400 * 240.00255 * 2 1 3 28 28 H 1.08998 * 109.47313 * 119.99529 * 2 1 3 29 29 H 1.09002 * 109.47598 * 60.00110 * 3 2 1 30 30 H 1.09006 * 109.47180 * 299.99724 * 3 2 1 31 31 H 1.09002 * 109.46993 * 59.99542 * 4 3 2 32 32 H 1.09000 * 109.46690 * 300.00241 * 4 3 2 33 33 H 0.96999 * 119.99743 * 179.97438 * 9 8 6 34 34 H 1.07994 * 120.03945 * 359.97109 * 17 16 14 35 35 H 1.07995 * 119.91872 * 180.29382 * 18 17 16 36 36 H 0.96704 * 114.00113 * 270.02525 * 20 19 18 37 37 H 1.07996 * 119.96775 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8239 -0.0013 6 6 4.4103 3.4260 1.1770 7 1 4.1342 4.4537 1.3618 8 6 5.1181 2.7129 2.1376 9 7 5.6289 1.5394 1.8408 10 14 5.3432 3.4233 3.8506 11 1 4.2175 2.9912 4.7174 12 1 6.6241 2.9374 4.4237 13 1 5.3668 4.9060 3.7724 14 6 4.1610 3.5018 -1.1615 15 8 3.9374 2.9391 -2.2165 16 6 4.5442 4.9246 -1.1521 17 6 5.6029 5.3608 -0.3490 18 6 5.9616 6.6893 -0.3479 19 6 5.2660 7.6017 -1.1345 20 8 5.6206 8.9117 -1.1244 21 6 4.2099 7.1771 -1.9297 22 6 3.8460 5.8456 -1.9430 23 9 2.8188 5.4320 -2.7170 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9330 0.9289 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 6.1231 1.0420 2.5111 34 1 6.1412 4.6551 0.2663 35 1 6.7821 7.0252 0.2687 36 1 5.1625 9.4381 -0.4548 37 1 3.6732 7.8891 -2.5391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186326457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = -124.647449 kcal Electronic energy + Delta-G solvation = -22362.843840 eV Core-core repulsion = 18825.904022 eV Total energy + Delta-G solvation = -3536.939817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.95040 -41.08743 -39.97598 -37.44706 -37.06749 -35.60640 -33.45817 -31.88113 -31.19437 -29.62628 -26.93925 -25.23087 -23.97989 -23.39286 -22.02223 -21.23816 -19.73561 -19.39348 -17.99171 -17.71432 -17.26143 -16.76071 -16.48168 -16.42667 -16.13533 -15.77999 -15.53775 -15.22630 -14.71521 -14.62390 -14.36992 -13.83117 -13.73949 -13.53445 -13.14661 -12.93902 -12.89035 -12.77780 -12.64008 -12.13445 -12.06404 -11.97098 -11.83092 -11.68027 -11.47054 -11.03904 -10.54059 -9.93632 -9.63420 -9.45612 -8.28155 -6.13862 -0.16833 0.19104 1.45052 1.50362 1.60966 1.90258 2.29150 2.51139 2.86185 2.96223 3.09356 3.47724 3.83268 3.96838 4.05760 4.10851 4.23147 4.30157 4.34484 4.51676 4.76115 4.80896 4.84811 4.92947 4.97390 5.05460 5.09152 5.15488 5.28838 5.32819 5.37821 5.40395 5.42330 5.55713 5.74476 5.98751 6.40073 6.83056 7.06003 7.46035 7.92610 8.72982 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.007289 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.338592 B = 3840.306590 C = 5425.463117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.117 4.117 4 C 0.117 3.883 5 N -0.435 5.435 6 C -0.348 4.348 7 H 0.096 0.904 8 C 0.007 3.993 9 N -0.894 5.894 10 Si 0.983 3.017 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.249 1.249 14 C 0.493 3.507 15 O -0.632 6.632 16 C -0.166 4.166 17 C -0.024 4.024 18 C -0.159 4.159 19 C 0.162 3.838 20 O -0.492 6.492 21 C -0.189 4.189 22 C 0.125 3.875 23 F -0.144 7.144 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.102 0.898 33 H 0.274 0.726 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.419 0.581 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 9.277 2.759 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.155 4.155 4 C -0.007 4.007 5 N -0.151 5.151 6 C -0.476 4.476 7 H 0.114 0.886 8 C -0.196 4.196 9 N -0.531 5.531 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.172 1.172 14 C 0.283 3.717 15 O -0.521 6.521 16 C -0.170 4.170 17 C -0.042 4.042 18 C -0.178 4.178 19 C 0.116 3.884 20 O -0.307 6.307 21 C -0.208 4.208 22 C 0.105 3.895 23 F -0.123 7.123 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.280 0.720 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.257 8.646 1.903 9.136 hybrid contribution -0.335 -0.222 0.707 0.813 sum -2.592 8.424 2.610 9.192 Atomic orbital electron populations 1.21713 0.94115 1.02438 1.01714 1.21397 0.97136 0.94862 1.01839 1.21806 0.95564 0.98065 1.00107 1.21470 0.92932 0.84278 1.01976 1.43579 1.54110 1.12134 1.05264 1.19719 1.35167 0.99356 0.93333 0.88606 1.26268 0.93757 0.96098 1.03458 1.69922 1.32812 1.14308 1.36047 0.85072 0.77558 0.79777 0.77036 1.20136 1.20739 1.17234 1.18697 0.81182 0.87803 0.84010 1.90609 1.57811 1.71312 1.32404 1.20116 1.01183 0.93508 1.02211 1.21360 0.93132 0.96498 0.93258 1.21665 1.02719 0.92032 1.01342 1.18135 0.91377 0.85243 0.93613 1.84702 1.68064 1.16016 1.61922 1.21338 1.00841 0.93267 1.05332 1.17762 0.86865 0.92930 0.91943 1.91468 1.56598 1.91339 1.72871 0.90873 0.92446 0.93256 0.92598 0.91590 0.92507 0.94922 0.95470 0.88003 0.91569 0.83960 0.81676 0.71984 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.11 -3.91 5.93 30.60 0.18 -3.73 16 3 C -0.12 -5.00 5.49 30.60 0.17 -4.83 16 4 C 0.12 5.84 4.87 86.38 0.42 6.26 16 5 N -0.44 -22.62 2.52 -639.31 -1.61 -24.23 16 6 C -0.35 -16.93 6.54 84.08 0.55 -16.38 16 7 H 0.10 4.45 6.69 -2.91 -0.02 4.43 16 8 C 0.01 0.35 5.13 84.94 0.44 0.78 16 9 N -0.89 -45.48 11.16 21.67 0.24 -45.23 16 10 Si 0.98 36.56 29.57 68.60 2.03 38.59 16 11 H -0.28 -10.26 7.11 99.48 0.71 -9.55 16 12 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 14 C 0.49 26.25 7.00 86.64 0.61 26.85 16 15 O -0.63 -37.53 16.13 -4.15 -0.07 -37.59 16 16 C -0.17 -7.40 5.20 -20.05 -0.10 -7.50 16 17 C -0.02 -0.89 7.87 22.51 0.18 -0.72 16 18 C -0.16 -4.53 9.96 22.33 0.22 -4.31 16 19 C 0.16 4.22 6.71 22.63 0.15 4.37 16 20 O -0.49 -9.42 13.49 -90.41 -1.22 -10.64 16 21 C -0.19 -5.63 9.95 22.37 0.22 -5.41 16 22 C 0.13 5.00 7.24 22.66 0.16 5.16 16 23 F -0.14 -6.31 16.39 44.97 0.74 -5.58 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.03 1.45 7.55 -2.39 -0.02 1.43 16 32 H 0.10 5.26 5.48 -2.39 -0.01 5.25 16 33 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 34 H 0.14 5.83 6.54 -2.91 -0.02 5.81 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.42 3.42 9.06 -74.05 -0.67 2.75 16 37 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -66.98 319.14 4.45 -62.53 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.43 Total: 24.81 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 3.91 Total: -2.65 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.37 Total: -69.47 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -1.29 Total: -48.23 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.74 Total: -5.58 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -66.98 4.45 -62.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186326457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.115 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds