Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46914 * 2 1 4 4 C 1.53001 * 109.46567 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46768 * 179.97438 * 4 3 2 6 6 C 1.37174 * 119.99861 * 269.99548 * 5 4 3 7 7 H 1.08008 * 119.99666 * 138.44989 * 6 5 4 8 8 C 1.38886 * 120.00412 * 318.45203 * 6 5 4 9 9 N 1.31471 * 120.00040 * 342.24553 * 8 6 5 10 10 Si 1.86801 * 120.00214 * 162.24080 * 8 6 5 11 11 H 1.48502 * 109.47095 * 60.00203 * 10 8 6 12 12 H 1.48508 * 109.47173 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47202 * 299.99926 * 10 8 6 14 14 C 1.34775 * 119.99936 * 90.00096 * 5 4 3 15 15 O 1.21514 * 120.00351 * 3.00192 * 14 5 4 16 16 O 1.34690 * 119.99686 * 183.00596 * 14 5 4 17 17 C 1.35966 * 116.99922 * 175.09533 * 16 14 5 18 18 C 1.38709 * 120.03369 * 256.20599 * 17 16 14 19 19 C 1.38138 * 119.97401 * 179.76694 * 18 17 16 20 20 C 1.38471 * 120.02604 * 0.48263 * 19 18 17 21 21 F 1.35095 * 119.96806 * 179.74856 * 20 19 18 22 22 C 1.38463 * 120.05716 * 359.77029 * 20 19 18 23 23 C 1.38141 * 120.03544 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47104 * 60.00573 * 1 2 3 25 25 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47130 * 300.00590 * 1 2 3 27 27 H 1.08999 * 109.47130 * 239.99410 * 2 1 3 28 28 H 1.09008 * 109.46848 * 119.99808 * 2 1 3 29 29 H 1.08997 * 109.47191 * 59.99852 * 3 2 1 30 30 H 1.09000 * 109.46804 * 299.99095 * 3 2 1 31 31 H 1.08997 * 109.47407 * 60.00081 * 4 3 2 32 32 H 1.09003 * 109.47357 * 299.99369 * 4 3 2 33 33 H 0.96997 * 119.99891 * 180.02562 * 9 8 6 34 34 H 1.08008 * 120.01234 * 359.97396 * 18 17 16 35 35 H 1.07993 * 119.98952 * 180.21114 * 19 18 17 36 36 H 1.08005 * 119.98329 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.01764 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2875 3.4696 -1.1882 7 1 3.9947 4.5024 -1.3067 8 6 4.8961 2.7954 -2.2390 9 7 5.5606 1.6844 -2.0103 10 14 4.7702 3.4673 -3.9775 11 1 5.3690 4.8253 -4.0279 12 1 5.4992 2.5695 -4.9092 13 1 3.3421 3.5408 -4.3776 14 6 4.2825 3.4597 1.1669 15 8 4.1319 2.8704 2.2189 16 8 4.6733 4.7487 1.1671 17 6 4.7829 5.3603 2.3764 18 6 3.8064 6.2523 2.7944 19 6 3.9165 6.8694 4.0253 20 6 5.0064 6.6053 4.8377 21 9 5.1155 7.2133 6.0392 22 6 5.9846 5.7191 4.4195 23 6 5.8742 5.0967 3.1912 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.9859 1.2138 -2.7441 34 1 2.9584 6.4618 2.1590 35 1 3.1546 7.5613 4.3524 36 1 6.8344 5.5144 5.0539 37 1 6.6376 4.4058 2.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195026196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = -97.948830 kcal Electronic energy + Delta-G solvation = -21819.766926 eV Core-core repulsion = 18283.984847 eV Total energy + Delta-G solvation = -3535.782078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.78600 -40.32796 -38.28093 -36.51959 -34.96984 -34.01735 -31.61517 -31.05100 -29.45630 -28.31157 -25.03652 -23.73860 -22.99939 -22.07633 -20.62473 -19.90533 -18.52988 -17.57156 -16.78414 -16.55431 -16.03844 -15.46788 -15.00733 -14.77608 -14.53528 -14.40755 -13.95771 -13.51154 -13.45022 -13.27475 -12.97777 -12.62684 -12.26612 -12.11116 -11.74891 -11.53295 -11.38034 -11.19383 -11.01259 -10.67963 -10.56452 -10.41254 -10.33307 -10.09333 -9.80522 -9.63907 -9.02473 -8.96244 -8.26686 -7.62312 -6.42477 -4.19509 1.17786 1.35609 3.12548 3.15703 3.19627 3.28047 3.84670 3.93748 4.19494 4.36832 4.87586 4.90632 4.93531 5.18440 5.38701 5.43497 5.49995 5.54813 5.60186 5.97708 5.99833 6.07380 6.19684 6.20447 6.27896 6.30717 6.33609 6.47025 6.59069 6.61514 6.73784 6.83946 7.01537 7.25763 7.43809 7.53615 7.85556 8.30268 9.00562 9.29742 9.85558 10.61285 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.005059 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.888912 B = 5533.204267 C = 6698.259687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.135 3.865 5 N -0.418 5.418 6 C -0.337 4.337 7 H 0.091 0.909 8 C 0.046 3.954 9 N -0.865 5.865 10 Si 0.921 3.079 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.604 3.396 15 O -0.613 6.613 16 O -0.297 6.297 17 C 0.121 3.879 18 C -0.100 4.100 19 C -0.141 4.141 20 C 0.082 3.918 21 F -0.144 7.144 22 C -0.140 4.140 23 C -0.092 4.092 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.271 0.729 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 3.920 5.224 7.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.170 4.170 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.465 4.465 7 H 0.109 0.891 8 C -0.161 4.161 9 N -0.501 5.501 10 Si 0.747 3.253 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.197 1.197 14 C 0.360 3.640 15 O -0.507 6.507 16 O -0.209 6.209 17 C 0.077 3.923 18 C -0.119 4.119 19 C -0.160 4.160 20 C 0.063 3.937 21 F -0.123 7.123 22 C -0.159 4.159 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.608 3.618 5.454 7.473 hybrid contribution 0.103 0.378 -0.673 0.779 sum -3.504 3.996 4.781 7.149 Atomic orbital electron populations 1.21755 0.96499 1.00777 1.01540 1.21423 0.95120 0.97434 1.01764 1.21960 0.97491 0.95833 1.01673 1.21447 0.91290 0.82115 1.03873 1.42380 1.57859 1.12167 1.01842 1.19422 1.40022 0.98404 0.88621 0.89112 1.25443 0.93590 0.96418 1.00600 1.69932 1.29553 1.17688 1.32913 0.86105 0.78680 0.78987 0.81573 1.19612 1.20848 1.19689 1.18804 0.79788 0.79568 0.85814 1.90853 1.61931 1.66395 1.31534 1.84385 1.81425 1.27070 1.28016 1.18443 0.93862 0.94335 0.85627 1.21074 0.98089 0.97437 0.95269 1.20890 0.98138 1.02643 0.94337 1.17650 0.97118 0.96786 0.82193 1.91466 1.96191 1.81696 1.42925 1.20940 0.99563 0.98006 0.97343 1.21290 0.98260 0.98666 0.92817 0.92946 0.93331 0.93083 0.92051 0.92309 0.92946 0.91807 0.87462 0.92304 0.91896 0.84377 0.84441 0.84503 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.13 3.11 5.02 -4.04 -0.02 3.09 16 5 N -0.42 -10.59 2.49 -120.21 -0.30 -10.89 16 6 C -0.34 -8.66 8.86 -14.92 -0.13 -8.79 16 7 H 0.09 2.30 7.78 -52.48 -0.41 1.90 16 8 C 0.05 1.14 5.01 -17.47 -0.09 1.05 16 9 N -0.86 -22.52 11.53 55.49 0.64 -21.88 16 10 Si 0.92 19.33 29.59 -169.99 -5.03 14.30 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 C 0.60 15.25 8.22 54.05 0.44 15.69 16 15 O -0.61 -16.12 15.42 -19.28 -0.30 -16.42 16 16 O -0.30 -6.86 9.20 -24.86 -0.23 -7.09 16 17 C 0.12 2.36 5.16 -39.23 -0.20 2.16 16 18 C -0.10 -1.63 9.98 -39.44 -0.39 -2.02 16 19 C -0.14 -1.99 10.02 -39.53 -0.40 -2.38 16 20 C 0.08 1.20 7.30 -39.41 -0.29 0.91 16 21 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 22 C -0.14 -2.08 10.02 -39.53 -0.40 -2.47 16 23 C -0.09 -1.61 9.54 -39.44 -0.38 -1.99 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 2.60 5.68 -51.93 -0.30 2.31 16 32 H 0.06 1.40 7.38 -51.93 -0.38 1.01 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.14 2.02 8.06 -52.48 -0.42 1.60 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -28.64 325.71 -6.93 -35.56 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.87 Total: 4.65 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.79 Total: -1.15 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.34 Total: -32.77 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.53 Total: -23.51 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.64 -6.93 -35.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195026196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.384 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds