Wall clock time and date at job start Tue Mar 31 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46914 * 2 1 4 4 C 1.53001 * 109.46567 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46768 * 179.97438 * 4 3 2 6 6 C 1.37174 * 119.99861 * 269.99548 * 5 4 3 7 7 H 1.08008 * 119.99666 * 138.44989 * 6 5 4 8 8 C 1.38886 * 120.00412 * 318.45203 * 6 5 4 9 9 N 1.31471 * 120.00040 * 342.24553 * 8 6 5 10 10 Si 1.86801 * 120.00214 * 162.24080 * 8 6 5 11 11 H 1.48502 * 109.47095 * 60.00203 * 10 8 6 12 12 H 1.48508 * 109.47173 * 180.02562 * 10 8 6 13 13 H 1.48493 * 109.47202 * 299.99926 * 10 8 6 14 14 C 1.34775 * 119.99936 * 90.00096 * 5 4 3 15 15 O 1.21514 * 120.00351 * 3.00192 * 14 5 4 16 16 O 1.34690 * 119.99686 * 183.00596 * 14 5 4 17 17 C 1.35966 * 116.99922 * 175.09533 * 16 14 5 18 18 C 1.38709 * 120.03369 * 256.20599 * 17 16 14 19 19 C 1.38138 * 119.97401 * 179.76694 * 18 17 16 20 20 C 1.38471 * 120.02604 * 0.48263 * 19 18 17 21 21 F 1.35095 * 119.96806 * 179.74856 * 20 19 18 22 22 C 1.38463 * 120.05716 * 359.77029 * 20 19 18 23 23 C 1.38141 * 120.03544 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47104 * 60.00573 * 1 2 3 25 25 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47130 * 300.00590 * 1 2 3 27 27 H 1.08999 * 109.47130 * 239.99410 * 2 1 3 28 28 H 1.09008 * 109.46848 * 119.99808 * 2 1 3 29 29 H 1.08997 * 109.47191 * 59.99852 * 3 2 1 30 30 H 1.09000 * 109.46804 * 299.99095 * 3 2 1 31 31 H 1.08997 * 109.47407 * 60.00081 * 4 3 2 32 32 H 1.09003 * 109.47357 * 299.99369 * 4 3 2 33 33 H 0.96997 * 119.99891 * 180.02562 * 9 8 6 34 34 H 1.08008 * 120.01234 * 359.97396 * 18 17 16 35 35 H 1.07993 * 119.98952 * 180.21114 * 19 18 17 36 36 H 1.08005 * 119.98329 * 179.97438 * 22 20 19 37 37 H 1.07999 * 120.01764 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2875 3.4696 -1.1882 7 1 3.9947 4.5024 -1.3067 8 6 4.8961 2.7954 -2.2390 9 7 5.5606 1.6844 -2.0103 10 14 4.7702 3.4673 -3.9775 11 1 5.3690 4.8253 -4.0279 12 1 5.4992 2.5695 -4.9092 13 1 3.3421 3.5408 -4.3776 14 6 4.2825 3.4597 1.1669 15 8 4.1319 2.8704 2.2189 16 8 4.6733 4.7487 1.1671 17 6 4.7829 5.3603 2.3764 18 6 3.8064 6.2523 2.7944 19 6 3.9165 6.8694 4.0253 20 6 5.0064 6.6053 4.8377 21 9 5.1155 7.2133 6.0392 22 6 5.9846 5.7191 4.4195 23 6 5.8742 5.0967 3.1912 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.9859 1.2138 -2.7441 34 1 2.9584 6.4618 2.1590 35 1 3.1546 7.5613 4.3524 36 1 6.8344 5.5144 5.0539 37 1 6.6376 4.4058 2.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195026196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:28 Heat of formation + Delta-G solvation = -111.590408 kcal Electronic energy + Delta-G solvation = -21820.358469 eV Core-core repulsion = 18283.984847 eV Total energy + Delta-G solvation = -3536.373621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.95565 -42.01347 -39.83827 -38.14177 -36.81511 -35.56691 -33.53123 -32.29886 -30.84382 -29.81509 -26.96754 -25.27913 -24.25926 -23.49543 -22.06490 -21.65341 -20.35200 -18.85774 -18.40826 -18.07590 -17.86755 -16.77121 -16.62520 -16.23071 -16.09682 -16.04685 -15.42552 -14.96176 -14.87112 -14.65442 -14.31406 -13.98780 -13.80486 -13.63427 -13.18098 -13.13041 -13.00737 -12.82205 -12.58044 -12.19295 -12.07507 -11.98578 -11.86068 -11.67270 -11.50984 -11.42260 -10.88998 -10.23258 -9.66683 -9.51685 -8.34616 -6.19565 -0.16655 0.11866 1.44093 1.47345 1.55871 1.68793 1.97675 2.34852 2.59161 3.00268 3.14219 3.57924 3.67317 3.80934 4.07192 4.11399 4.18981 4.27152 4.30259 4.46358 4.64976 4.80525 4.81122 4.84510 4.96951 4.98860 4.99458 5.05542 5.17555 5.28967 5.33699 5.41445 5.43506 5.52894 5.55506 5.81735 6.05201 6.35207 7.05325 7.36392 7.94087 8.69535 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015587 B = 0.005059 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.888912 B = 5533.204267 C = 6698.259687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.136 3.864 5 N -0.429 5.429 6 C -0.358 4.358 7 H 0.088 0.912 8 C 0.008 3.992 9 N -0.894 5.894 10 Si 0.989 3.011 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.261 1.261 14 C 0.596 3.404 15 O -0.634 6.634 16 O -0.307 6.307 17 C 0.073 3.927 18 C -0.101 4.101 19 C -0.127 4.127 20 C 0.089 3.911 21 F -0.135 7.135 22 C -0.133 4.133 23 C -0.107 4.107 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.275 0.725 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 4.901 5.379 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C 0.014 3.986 5 N -0.154 5.154 6 C -0.485 4.485 7 H 0.105 0.895 8 C -0.195 4.195 9 N -0.530 5.530 10 Si 0.812 3.188 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.186 1.186 14 C 0.353 3.647 15 O -0.530 6.530 16 O -0.219 6.219 17 C 0.030 3.970 18 C -0.119 4.119 19 C -0.146 4.146 20 C 0.069 3.931 21 F -0.114 7.114 22 C -0.152 4.152 23 C -0.125 4.125 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.182 0.818 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.668 4.611 5.623 8.641 hybrid contribution 0.497 0.141 -0.571 0.770 sum -4.171 4.752 5.052 8.093 Atomic orbital electron populations 1.21714 0.94093 1.02412 1.01824 1.21411 0.97167 0.94731 1.02039 1.21834 0.94724 0.98264 1.00811 1.21465 0.93625 0.81220 1.02260 1.42670 1.57993 1.12772 1.01995 1.19619 1.40994 0.98701 0.89179 0.89455 1.26289 0.92607 0.96481 1.04145 1.70029 1.30006 1.18776 1.34219 0.85068 0.79088 0.78252 0.76432 1.19343 1.20319 1.18597 1.19003 0.79679 0.80480 0.85581 1.90798 1.62887 1.67221 1.32125 1.84378 1.81210 1.25934 1.30417 1.18964 0.96154 0.96179 0.85680 1.21240 0.97664 0.96720 0.96281 1.21228 0.98505 1.01995 0.92843 1.17739 0.96913 0.96094 0.82315 1.91497 1.96118 1.81389 1.42381 1.21154 1.00526 0.97179 0.96295 1.21287 0.97878 0.99423 0.93940 0.92536 0.91022 0.92965 0.91681 0.92179 0.94038 0.92215 0.88736 0.93945 0.91532 0.83172 0.80709 0.81750 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.62 5.93 30.60 0.18 -3.44 16 3 C -0.12 -4.67 5.54 30.59 0.17 -4.50 16 4 C 0.14 6.53 5.02 86.38 0.43 6.97 16 5 N -0.43 -22.60 2.49 -764.63 -1.91 -24.50 16 6 C -0.36 -18.85 8.86 84.01 0.74 -18.10 16 7 H 0.09 4.55 7.78 -2.91 -0.02 4.53 16 8 C 0.01 0.41 5.01 84.90 0.43 0.84 16 9 N -0.89 -47.37 11.53 21.66 0.25 -47.12 16 10 Si 0.99 39.46 29.59 68.60 2.03 41.49 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 12 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 13 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 14 C 0.60 31.37 8.22 129.79 1.07 32.44 16 15 O -0.63 -34.73 15.42 19.79 0.31 -34.42 16 16 O -0.31 -14.81 9.20 -0.18 0.00 -14.81 16 17 C 0.07 2.90 5.16 22.50 0.12 3.02 16 18 C -0.10 -3.19 9.98 22.36 0.22 -2.97 16 19 C -0.13 -3.24 10.02 22.30 0.22 -3.02 16 20 C 0.09 2.37 7.30 22.38 0.16 2.53 16 21 F -0.14 -3.36 17.27 44.97 0.78 -2.58 16 22 C -0.13 -3.77 10.02 22.30 0.22 -3.54 16 23 C -0.11 -3.82 9.54 22.36 0.21 -3.60 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 4.76 5.68 -2.39 -0.01 4.75 16 32 H 0.04 2.12 7.38 -2.39 -0.02 2.10 16 33 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -63.03 325.71 7.42 -55.61 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.07 Total: 22.61 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 4.90 Total: 3.74 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.66 Total: -71.62 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: 0.30 Total: -49.24 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -63.03 7.42 -55.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195026196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.983 kcal (2) G-P(sol) polarization free energy of solvation -63.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds