Wall clock time and date at job start Tue Mar 31 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99664 * 2 1 4 4 H 1.48499 * 109.46758 * 269.99977 * 3 2 1 5 5 H 1.48496 * 109.47245 * 29.99946 * 3 2 1 6 6 H 1.48497 * 109.47071 * 150.00147 * 3 2 1 7 7 C 1.39926 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99720 * 199.11890 * 7 2 1 9 9 C 1.41404 * 120.00275 * 19.11569 * 7 2 1 10 10 C 1.40792 * 120.21180 * 204.45013 * 9 7 2 11 11 C 1.37645 * 119.90032 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32762 * 359.74219 * 11 10 9 13 13 C 1.39318 * 120.41747 * 0.51611 * 12 11 10 14 14 N 1.39722 * 119.94988 * 179.76286 * 13 12 11 15 15 C 1.39707 * 120.00113 * 324.34934 * 14 13 12 16 16 C 1.38984 * 119.90732 * 331.56150 * 15 14 13 17 17 C 1.38202 * 119.69673 * 179.81733 * 16 15 14 18 18 C 1.37829 * 120.07287 * 359.97438 * 17 16 15 19 19 C 1.38962 * 120.90467 * 0.35293 * 18 17 16 20 20 C 1.38611 * 119.90813 * 151.53866 * 15 14 13 21 21 O 1.36391 * 111.31498 * 179.09717 * 19 18 17 22 22 C 1.43770 * 109.09691 * 18.76928 * 21 19 18 23 23 C 1.51665 * 132.08359 * 180.38273 * 18 17 16 24 24 C 1.38334 * 120.09385 * 359.48348 * 13 12 11 25 25 H 0.96992 * 120.00293 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.04484 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.83837 * 180.02562 * 11 10 9 28 28 H 1.07996 * 119.79278 * 180.28029 * 12 11 10 29 29 H 0.97002 * 120.00012 * 144.34884 * 14 13 12 30 30 H 1.07998 * 120.15491 * 359.79031 * 16 15 14 31 31 H 1.07998 * 119.96536 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.90873 * 0.02562 * 20 15 14 33 33 H 1.09005 * 110.74756 * 214.05127 * 22 21 19 34 34 H 1.08996 * 110.74738 * 90.88372 * 22 21 19 35 35 H 1.09004 * 110.93988 * 46.41778 * 23 18 17 36 36 H 1.08998 * 110.93865 * 282.73971 * 23 18 17 37 37 H 1.07995 * 120.15752 * 180.23128 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0433 -1.2376 0.3058 9 6 1.3596 -2.4025 -0.4021 10 6 1.8246 -3.6508 0.0536 11 6 1.1889 -4.8058 -0.3417 12 6 0.0894 -4.7465 -1.1822 13 6 -0.3789 -3.5189 -1.6455 14 7 -1.4857 -3.4708 -2.4969 15 6 -1.6787 -4.4748 -3.4491 16 6 -0.5843 -5.1525 -3.9732 17 6 -0.7805 -6.1474 -4.9121 18 6 -2.0564 -6.4652 -5.3253 19 6 -3.1601 -5.7920 -4.8157 20 6 -2.9612 -4.7925 -3.8682 21 8 -4.3191 -6.2481 -5.3714 22 6 -4.0838 -7.5403 -5.9562 23 6 -2.5792 -7.4908 -6.3128 24 6 0.2468 -2.3473 -1.2592 25 1 -0.4850 0.8400 -0.0004 26 1 2.6789 -3.7019 0.7124 27 1 1.5462 -5.7628 0.0088 28 1 -0.4056 -5.6579 -1.4834 29 1 -2.1201 -2.7404 -2.4269 30 1 0.4149 -4.9025 -3.6485 31 1 0.0668 -6.6771 -5.3218 32 1 -3.8084 -4.2629 -3.4581 33 1 -4.6889 -7.6743 -6.8529 34 1 -4.2838 -8.3327 -5.2351 35 1 -2.1089 -8.4609 -6.1525 36 1 -2.4329 -7.1534 -7.3389 37 1 -0.1176 -1.3948 -1.6147 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206701093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:31 Heat of formation + Delta-G solvation = 14.235206 kcal Electronic energy + Delta-G solvation = -20556.439464 eV Core-core repulsion = 17456.291275 eV Total energy + Delta-G solvation = -3100.148189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85491 -38.67285 -36.97009 -34.59425 -33.42029 -32.02675 -29.95164 -29.50133 -29.01405 -26.80911 -25.31686 -23.25508 -22.17895 -21.43724 -20.99443 -20.02655 -17.73788 -17.06708 -16.50793 -16.13203 -16.05880 -15.33219 -14.72631 -14.70028 -14.23902 -13.70865 -13.26027 -13.11096 -13.03892 -12.86537 -12.54371 -12.37576 -11.84231 -11.75679 -11.48613 -11.32408 -11.17758 -11.01620 -10.73145 -10.63561 -10.55918 -9.88951 -9.74002 -9.47393 -9.16764 -8.30246 -7.80307 -7.45674 -6.87938 -6.43424 -4.41774 1.63879 1.68852 2.75277 2.99175 3.05439 3.08470 3.19279 3.29305 3.90045 4.03880 4.13295 4.55277 4.58547 4.69160 4.94228 5.11944 5.33979 5.43193 5.62467 5.63339 5.68757 5.78602 5.85246 6.07389 6.24422 6.47329 6.50906 6.59315 6.71160 6.76737 6.80164 7.01178 7.04059 7.21173 7.28530 7.38180 7.71415 7.81131 7.92928 8.01714 8.32287 8.39364 8.64361 8.85246 8.92065 10.13191 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.003678 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.113927 B = 7610.104856 C = 8065.216064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.128 3.872 10 C -0.238 4.238 11 C -0.075 4.075 12 C -0.264 4.264 13 C 0.171 3.829 14 N -0.683 5.683 15 C 0.246 3.754 16 C -0.188 4.188 17 C -0.037 4.037 18 C -0.232 4.232 19 C 0.133 3.867 20 C -0.205 4.205 21 O -0.310 6.310 22 C 0.052 3.948 23 C -0.100 4.100 24 C -0.194 4.194 25 H 0.280 0.720 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.403 0.597 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -9.133 -9.593 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.094 4.094 12 C -0.285 4.285 13 C 0.077 3.923 14 N -0.304 5.304 15 C 0.143 3.857 16 C -0.210 4.210 17 C -0.056 4.056 18 C -0.235 4.235 19 C 0.088 3.912 20 C -0.228 4.228 21 O -0.224 6.224 22 C -0.024 4.024 23 C -0.137 4.137 24 C -0.216 4.216 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.239 0.761 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.182 -8.908 -9.513 14.025 hybrid contribution 0.078 0.945 0.064 0.951 sum -5.104 -7.963 -9.449 13.369 Atomic orbital electron populations 1.69833 1.07625 1.29233 1.34935 1.25904 0.94694 1.01323 0.92101 0.86333 0.80573 0.80608 0.79351 1.19264 1.20350 1.18572 1.19577 0.98740 0.91365 1.39538 0.90264 1.17374 0.90254 0.92094 0.87813 1.20977 1.04702 0.92748 1.07392 1.20355 0.95429 0.96587 0.97034 1.20182 1.03881 0.94889 1.09591 1.17550 0.88055 0.94607 0.92040 1.42201 1.27484 1.25498 1.35226 1.17338 0.91747 0.88841 0.87772 1.20929 0.98845 1.00592 1.00593 1.20005 0.94751 0.95655 0.95151 1.20423 0.94040 1.04518 1.04505 1.19141 0.84618 0.94881 0.92570 1.19669 0.96148 1.03662 1.03340 1.86857 1.31427 1.33599 1.70512 1.23751 0.96244 0.84163 0.98193 1.21616 0.94538 0.98768 0.98785 1.21043 1.00556 0.95594 1.04432 0.90898 0.88943 0.89148 0.89044 0.76121 0.84694 0.86170 0.85875 0.88180 0.90901 0.89786 0.90025 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 11.04 55.55 0.61 -19.31 16 2 C 0.08 1.91 5.11 -17.34 -0.09 1.83 16 3 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -12.02 9.04 -37.75 -0.34 -12.36 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.32 5.57 -106.85 -0.60 2.73 16 10 C -0.24 -5.73 9.79 -38.83 -0.38 -6.11 16 11 C -0.08 -1.66 10.01 -39.69 -0.40 -2.06 16 12 C -0.26 -5.83 8.02 -39.08 -0.31 -6.14 16 13 C 0.17 3.86 5.73 -83.82 -0.48 3.38 16 14 N -0.68 -13.26 5.43 -8.51 -0.05 -13.31 16 15 C 0.25 4.41 5.92 -83.85 -0.50 3.91 16 16 C -0.19 -3.24 8.14 -39.32 -0.32 -3.56 16 17 C -0.04 -0.54 10.02 -39.74 -0.40 -0.94 16 18 C -0.23 -3.32 6.27 -104.03 -0.65 -3.97 16 19 C 0.13 2.10 7.03 -38.97 -0.27 1.82 16 20 C -0.21 -3.41 9.96 -39.10 -0.39 -3.80 16 21 O -0.31 -4.47 11.13 -21.00 -0.23 -4.70 16 22 C 0.05 0.52 8.00 38.05 0.30 0.82 16 23 C -0.10 -1.03 7.12 -26.51 -0.19 -1.22 16 24 C -0.19 -4.87 8.61 -38.67 -0.33 -5.20 16 25 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 26 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.92 6.98 -52.49 -0.37 1.56 16 29 H 0.40 7.25 8.91 -40.82 -0.36 6.89 16 30 H 0.14 2.50 6.72 -52.49 -0.35 2.15 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 3.09 6.21 -52.49 -0.33 2.77 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -27.73 312.69 -9.67 -37.40 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.34 Total: 12.75 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: -5.35 Total: -30.87 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.57 Total: -32.61 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.23 Total: -4.70 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.73 -9.67 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206701093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.634 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds