Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32642 * 1 3 3 C 1.47685 * 119.99983 * 2 1 4 4 C 1.39494 * 120.18686 * 0.26920 * 3 2 1 5 5 C 1.37949 * 119.93025 * 180.29907 * 4 3 2 6 6 C 1.38458 * 120.31650 * 359.70546 * 5 4 3 7 7 C 1.38127 * 120.37053 * 359.97438 * 6 5 4 8 8 C 1.38797 * 120.05982 * 0.02562 * 7 6 5 9 9 N 1.39402 * 120.15472 * 179.97438 * 8 7 6 10 10 C 1.39774 * 119.99761 * 30.79554 * 9 8 7 11 11 C 1.38778 * 120.10834 * 15.68387 * 10 9 8 12 12 C 1.38181 * 119.99157 * 180.02562 * 11 10 9 13 13 C 1.38359 * 120.20416 * 359.97005 * 12 11 10 14 14 C 1.38173 * 120.21808 * 0.02562 * 13 12 11 15 15 C 1.38719 * 120.00270 * 0.27061 * 14 13 12 16 16 O 1.35786 * 120.10204 * 179.72878 * 15 14 13 17 17 C 1.34803 * 116.99649 * 5.77294 * 16 15 14 18 18 H 1.07999 * 120.00399 * 354.87591 * 17 16 15 19 19 C 1.38631 * 119.99617 * 174.86846 * 17 16 15 20 20 N 1.31574 * 119.99987 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99772 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47430 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46861 * 120.00147 * 21 19 17 24 24 H 1.48497 * 109.47468 * 240.00327 * 21 19 17 25 25 H 1.07999 * 119.99939 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00008 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.00466 * 180.02562 * 2 1 3 28 28 H 1.07999 * 120.03019 * 0.02562 * 4 3 2 29 29 H 1.08007 * 119.84266 * 179.72871 * 5 4 3 30 30 H 1.07997 * 119.81822 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.97074 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99448 * 210.80348 * 9 8 7 33 33 H 1.08004 * 120.00238 * 0.02562 * 11 10 9 34 34 H 1.07992 * 119.89684 * 179.97438 * 12 11 10 35 35 H 1.08001 * 119.88852 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.99641 * 180.02562 * 14 13 12 37 37 H 0.97000 * 119.99693 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3264 0.0000 0.0000 3 6 2.0648 1.2790 0.0000 4 6 1.3713 2.4893 0.0057 5 6 2.0664 3.6809 -0.0006 6 6 3.4509 3.6824 -0.0064 7 6 4.1506 2.4914 -0.0054 8 6 3.4669 1.2835 0.0009 9 7 4.1710 0.0803 0.0014 10 6 5.4240 0.0042 0.6162 11 6 5.8299 0.9986 1.4950 12 6 7.0693 0.9211 2.1010 13 6 7.9086 -0.1462 1.8351 14 6 7.5131 -1.1411 0.9616 15 6 6.2733 -1.0690 0.3436 16 8 5.8849 -2.0428 -0.5193 17 6 6.6971 -3.1117 -0.6416 18 1 7.6486 -3.1282 -0.1309 19 6 6.3108 -4.1899 -1.4227 20 7 5.1518 -4.1696 -2.0451 21 14 7.4359 -5.6715 -1.5915 22 1 8.6711 -5.4481 -0.7979 23 1 6.7380 -6.8826 -1.0899 24 1 7.7928 -5.8619 -3.0203 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8665 -0.9353 -0.0004 28 1 0.2913 2.4934 0.0105 29 1 1.5279 4.6172 -0.0006 30 1 3.9869 4.6199 -0.0108 31 1 5.2305 2.5001 -0.0095 32 1 3.7914 -0.7039 -0.4250 33 1 5.1771 1.8329 1.7052 34 1 7.3838 1.6960 2.7843 35 1 8.8761 -0.2018 2.3119 36 1 8.1710 -1.9728 0.7570 37 1 4.8814 -4.9242 -2.5913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = 38.996128 kcal Electronic energy + Delta-G solvation = -20890.404111 eV Core-core repulsion = 17791.329636 eV Total energy + Delta-G solvation = -3099.074474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41178 -40.17057 -38.20246 -36.25211 -35.13226 -34.27367 -31.23435 -31.02961 -30.24939 -28.69345 -27.35329 -24.66418 -23.81785 -22.91490 -22.09291 -20.63959 -19.79785 -19.12308 -18.51675 -17.54189 -16.82900 -16.40246 -16.03897 -15.91334 -15.65232 -15.30089 -15.12327 -14.89718 -14.71175 -14.29243 -14.04152 -13.85707 -13.52151 -13.23388 -12.92906 -12.67474 -12.50398 -12.28983 -12.13337 -12.08062 -11.83458 -11.63587 -11.32858 -11.21201 -10.81375 -9.78450 -9.29346 -9.10377 -8.47063 -7.96963 -6.10654 0.02827 0.35057 0.66639 0.94969 1.33772 1.41399 1.51225 1.65477 2.15098 2.41144 2.83437 3.02145 3.20449 3.42994 3.84848 3.93174 4.09192 4.17294 4.29695 4.34873 4.45628 4.50665 4.58264 4.61160 4.70958 4.90318 5.01721 5.07094 5.10784 5.15978 5.34123 5.37236 5.48791 5.61090 5.65717 5.71940 5.79143 5.82074 5.96709 6.03530 6.15449 6.55047 6.67060 6.98881 7.78689 8.76136 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.005291 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.476980 B = 5291.225322 C = 6651.347388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.130 4.130 4 C -0.083 4.083 5 C -0.157 4.157 6 C -0.082 4.082 7 C -0.187 4.187 8 C 0.177 3.823 9 N -0.677 5.677 10 C 0.108 3.892 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.110 4.110 14 C -0.214 4.214 15 C 0.066 3.934 16 O -0.229 6.229 17 C -0.406 4.406 18 H 0.099 0.901 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.015 2.985 22 H -0.252 1.252 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.125 0.875 32 H 0.403 0.597 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.121 0.879 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 13.622 6.223 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.101 4.101 5 C -0.176 4.176 6 C -0.100 4.100 7 C -0.209 4.209 8 C 0.077 3.923 9 N -0.298 5.298 10 C 0.010 3.990 11 C -0.163 4.163 12 C -0.169 4.169 13 C -0.129 4.129 14 C -0.234 4.234 15 C 0.014 3.986 16 O -0.136 6.136 17 C -0.483 4.483 18 H 0.116 0.884 19 C -0.219 4.219 20 N -0.559 5.559 21 Si 0.835 3.165 22 H -0.176 1.176 23 H -0.195 1.195 24 H -0.196 1.196 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.105 0.895 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.143 0.857 32 H 0.238 0.762 33 H 0.163 0.837 34 H 0.172 0.828 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.271 13.533 5.997 15.406 hybrid contribution 0.445 -1.751 -0.613 1.908 sum -3.825 11.782 5.384 13.507 Atomic orbital electron populations 1.24473 0.94317 1.03512 0.98159 1.21630 0.96348 0.95177 1.02515 1.19004 0.90844 0.94886 1.08616 1.21382 1.00721 0.90574 0.97419 1.21297 0.94111 0.98563 1.03626 1.21335 0.94762 0.97303 0.96606 1.21176 1.00546 0.91518 1.07612 1.18209 0.90888 0.86000 0.97164 1.42003 1.17228 1.11157 1.59379 1.17388 0.86115 0.96640 0.98859 1.21003 0.98768 0.99019 0.97507 1.21011 0.93746 0.99741 1.02369 1.21075 1.00643 0.93499 0.97666 1.21155 0.96380 1.02721 1.03150 1.19542 0.94002 0.91425 0.93622 1.83857 1.48037 1.27422 1.54334 1.21787 1.00936 0.93987 1.31574 0.88352 1.26471 0.98706 1.01260 0.95502 1.70180 1.22136 1.32595 1.30951 0.84564 0.77454 0.75715 0.78724 1.17551 1.19547 1.19564 0.87004 0.85680 0.89538 0.83311 0.82734 0.83038 0.85705 0.76173 0.83712 0.82846 0.83756 0.86118 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.16 66.66 0.94 -3.15 16 2 C -0.14 -4.42 9.53 23.60 0.22 -4.20 16 3 C -0.13 -4.12 5.88 -20.00 -0.12 -4.24 16 4 C -0.08 -2.00 9.40 22.50 0.21 -1.78 16 5 C -0.16 -3.25 10.03 22.25 0.22 -3.03 16 6 C -0.08 -1.87 10.03 22.30 0.22 -1.65 16 7 C -0.19 -5.72 7.40 22.38 0.17 -5.55 16 8 C 0.18 6.33 6.10 38.55 0.24 6.57 16 9 N -0.68 -28.96 5.17 -179.47 -0.93 -29.89 16 10 C 0.11 4.73 6.34 38.32 0.24 4.97 16 11 C -0.14 -5.06 7.70 22.39 0.17 -4.88 16 12 C -0.15 -4.71 10.04 22.28 0.22 -4.49 16 13 C -0.11 -3.77 10.04 22.28 0.22 -3.55 16 14 C -0.21 -9.40 9.16 22.37 0.20 -9.20 16 15 C 0.07 3.30 6.67 22.70 0.15 3.45 16 16 O -0.23 -13.58 9.08 -22.87 -0.21 -13.79 16 17 C -0.41 -23.62 9.49 67.91 0.64 -22.97 16 18 H 0.10 5.29 5.21 -2.91 -0.02 5.28 16 19 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 20 N -0.92 -56.15 13.67 21.61 0.30 -55.85 16 21 Si 1.02 43.25 29.55 68.60 2.03 45.28 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H 0.11 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.13 2.33 6.04 -2.91 -0.02 2.31 16 27 H 0.09 3.23 6.81 -2.91 -0.02 3.21 16 28 H 0.15 2.68 6.17 -2.91 -0.02 2.66 16 29 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.13 3.93 6.00 -2.91 -0.02 3.91 16 32 H 0.40 19.09 6.84 -92.71 -0.63 18.46 16 33 H 0.15 4.58 5.42 -2.91 -0.02 4.56 16 34 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -70.44 312.95 6.11 -64.33 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: 0.48 Total: 44.41 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 4.44 Total: -54.49 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.63 Total: -85.74 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.21 Total: -13.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.44 6.11 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.329 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds