Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32558 * 1 3 3 C 1.47822 * 119.99738 * 2 1 4 4 C 1.39597 * 120.10889 * 359.97438 * 3 2 1 5 5 C 1.38007 * 120.01529 * 180.02562 * 4 3 2 6 6 C 1.38224 * 120.22011 * 359.74591 * 5 4 3 7 7 C 1.39015 * 120.20877 * 0.51267 * 6 5 4 8 8 N 1.39692 * 120.00459 * 179.76610 * 7 6 5 9 9 C 1.39794 * 120.00415 * 354.98235 * 8 7 6 10 10 C 1.38782 * 120.10911 * 254.87292 * 9 8 7 11 11 C 1.38177 * 119.99052 * 180.29598 * 10 9 8 12 12 C 1.38351 * 120.20829 * 359.72080 * 11 10 9 13 13 C 1.38176 * 120.21252 * 359.97438 * 12 11 10 14 14 C 1.38717 * 120.00567 * 0.02562 * 13 12 11 15 15 O 1.35793 * 120.10101 * 180.02562 * 14 13 12 16 16 C 1.34804 * 116.99840 * 5.65245 * 15 14 13 17 17 H 1.08001 * 119.99798 * 354.92586 * 16 15 14 18 18 C 1.38623 * 119.99629 * 174.93378 * 16 15 14 19 19 N 1.31578 * 120.00544 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99712 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47139 * 60.00135 * 20 18 16 22 22 H 1.48505 * 109.46786 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47127 * 299.99773 * 20 18 16 24 24 C 1.38708 * 119.98551 * 359.48780 * 7 6 5 25 25 H 1.07999 * 120.00350 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00321 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00133 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.98926 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.89001 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.89469 * 180.27366 * 6 5 4 31 31 H 0.96999 * 120.00459 * 174.98214 * 8 7 6 32 32 H 1.07996 * 119.99908 * 0.02562 * 10 9 8 33 33 H 1.08004 * 119.89531 * 179.74027 * 11 10 9 34 34 H 1.08006 * 119.89268 * 180.02562 * 12 11 10 35 35 H 1.08005 * 119.99107 * 180.02562 * 13 12 11 36 36 H 0.96992 * 120.00213 * 180.02562 * 19 18 16 37 37 H 1.08000 * 120.10831 * 180.23304 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 1.3689 2.4905 -0.0005 5 6 2.0608 3.6845 -0.0011 6 6 3.4430 3.6877 0.0042 7 6 4.1452 2.4879 -0.0006 8 7 5.5421 2.4961 -0.0002 9 6 6.2342 3.7065 -0.1008 10 6 6.8520 4.0583 -1.2927 11 6 7.5405 5.2525 -1.3875 12 6 7.6118 6.1033 -0.2988 13 6 6.9946 5.7644 0.8901 14 6 6.3010 4.5677 0.9951 15 8 5.6932 4.2330 2.1624 16 6 5.7011 5.1574 3.1435 17 1 6.2465 6.0802 3.0115 18 6 5.0094 4.9234 4.3218 19 7 4.3447 3.7992 4.4824 20 14 5.0198 6.2047 5.6811 21 1 4.4399 7.4728 5.1705 22 1 4.2109 5.7171 6.8271 23 1 6.4164 6.4428 6.1262 24 6 3.4585 1.2827 -0.0001 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8656 -0.9353 -0.0004 28 1 0.2889 2.4923 -0.0014 29 1 1.5205 4.6197 -0.0011 30 1 3.9792 4.6252 0.0082 31 1 6.0321 1.6618 0.0699 32 1 6.7982 3.3967 -2.1445 33 1 8.0243 5.5228 -2.3145 34 1 8.1511 7.0357 -0.3787 35 1 7.0522 6.4314 1.7376 36 1 3.8605 3.6357 5.3068 37 1 4.0021 0.3495 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212602922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 52.730615 kcal Electronic energy + Delta-G solvation = -21066.698503 eV Core-core repulsion = 17968.219600 eV Total energy + Delta-G solvation = -3098.478902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61846 -38.46467 -36.54021 -35.14217 -33.10193 -32.29481 -30.31815 -29.24883 -28.51732 -27.16416 -25.35829 -23.02049 -21.95819 -21.55541 -21.11595 -19.08652 -17.99228 -17.25831 -16.71099 -16.05730 -15.27909 -14.84243 -14.70899 -14.59975 -13.98233 -13.78350 -13.43020 -13.22829 -12.93767 -12.83163 -12.55964 -12.45588 -11.72682 -11.52726 -11.30182 -11.11269 -11.02577 -10.89267 -10.75026 -10.55319 -10.37310 -10.26315 -9.52852 -9.29526 -8.86422 -8.19234 -7.83556 -7.31148 -6.75582 -6.45605 -4.05113 1.46473 1.98464 2.23098 2.29941 3.02139 3.11056 3.12499 3.15120 3.93218 4.07795 4.46766 4.60545 5.05135 5.11013 5.18501 5.23326 5.53160 5.60439 5.72559 5.73743 5.86238 5.90408 5.98588 6.13342 6.21192 6.29048 6.44587 6.59986 6.63159 6.69005 6.76056 6.98056 7.00919 7.07706 7.14538 7.26448 7.29024 7.30791 7.45261 7.66822 7.94431 8.18114 8.39733 8.97964 9.66600 10.69956 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.006864 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.773225 B = 4078.531688 C = 5888.921950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.031 4.031 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.156 4.156 7 C 0.234 3.766 8 N -0.680 5.680 9 C 0.056 3.944 10 C -0.075 4.075 11 C -0.211 4.211 12 C -0.071 4.071 13 C -0.233 4.233 14 C 0.147 3.853 15 O -0.155 6.155 16 C -0.397 4.397 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.850 5.850 20 Si 0.937 3.063 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.183 4.183 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.398 0.602 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.270 0.730 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 -2.137 -8.604 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.120 4.120 3 C -0.032 4.032 4 C -0.192 4.192 5 C -0.096 4.096 6 C -0.178 4.178 7 C 0.132 3.868 8 N -0.304 5.304 9 C -0.038 4.038 10 C -0.095 4.095 11 C -0.231 4.231 12 C -0.090 4.090 13 C -0.253 4.253 14 C 0.090 3.910 15 O -0.057 6.057 16 C -0.473 4.473 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.483 5.483 20 Si 0.762 3.238 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.205 4.205 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.233 0.767 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.847 -2.307 -8.323 8.832 hybrid contribution 0.348 0.462 0.936 1.100 sum -1.499 -1.846 -7.387 7.760 Atomic orbital electron populations 1.24251 0.95761 1.01771 1.01467 1.21816 0.95090 0.95919 0.99170 1.18635 0.92382 0.92652 0.99504 1.20863 0.98846 0.91826 1.07676 1.20716 0.93644 0.97410 0.97852 1.20713 0.94022 0.96934 1.06102 1.17682 0.83296 0.93500 0.92356 1.41453 1.01963 1.06216 1.80801 1.16596 1.05127 0.90041 0.92042 1.20864 0.97256 0.96334 0.95032 1.20468 1.07235 0.96481 0.98914 1.20810 0.97292 0.98098 0.92765 1.21111 1.05550 0.99249 0.99405 1.19756 0.91733 0.92606 0.86911 1.84051 1.64408 1.39909 1.17349 1.21272 1.33212 0.99169 0.93677 0.89245 1.25257 0.95437 0.97576 0.97894 1.70054 1.28753 1.23032 1.26454 0.85842 0.78721 0.79702 0.79538 1.19481 1.20262 1.19538 1.20506 0.93322 0.95902 1.10810 0.88383 0.88079 0.87000 0.86881 0.86731 0.86320 0.76665 0.86857 0.87369 0.87356 0.85350 0.91967 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 14.15 28.82 0.41 -2.00 16 2 C -0.10 -1.45 9.91 -37.57 -0.37 -1.82 16 3 C -0.03 -0.54 5.87 -105.04 -0.62 -1.15 16 4 C -0.17 -3.00 9.40 -39.16 -0.37 -3.37 16 5 C -0.08 -1.46 10.02 -39.67 -0.40 -1.86 16 6 C -0.16 -3.28 8.93 -39.30 -0.35 -3.63 16 7 C 0.23 4.73 6.50 -83.81 -0.54 4.19 16 8 N -0.68 -13.26 5.18 -8.31 -0.04 -13.30 16 9 C 0.06 1.14 4.89 -83.54 -0.41 0.73 16 10 C -0.07 -1.32 9.97 -39.40 -0.39 -1.71 16 11 C -0.21 -3.53 10.04 -39.56 -0.40 -3.93 16 12 C -0.07 -1.26 10.04 -39.56 -0.40 -1.66 16 13 C -0.23 -4.91 9.16 -39.43 -0.36 -5.27 16 14 C 0.15 3.42 5.48 -38.92 -0.21 3.21 16 15 O -0.16 -4.26 9.18 -0.01 0.00 -4.26 16 16 C -0.40 -10.84 9.49 30.87 0.29 -10.54 16 17 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 18 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 19 N -0.85 -24.67 13.67 55.48 0.76 -23.91 16 20 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.18 -3.33 9.63 -38.98 -0.38 -3.71 16 25 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.22 6.03 -52.49 -0.32 0.90 16 27 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 28 H 0.11 1.68 6.16 -52.49 -0.32 1.36 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.12 2.68 6.28 -52.48 -0.33 2.35 16 31 H 0.40 6.84 8.84 -40.82 -0.36 6.48 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 2.71 5.64 -52.48 -0.30 2.41 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 37 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -30.36 320.72 -8.06 -38.42 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -3.99 Total: 14.29 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -4.59 Total: -31.42 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.72 Total: -37.21 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.00 Total: -4.26 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.36 -8.06 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.153 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds